DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and ABCA5

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_001326002.1 Gene:ABCA5 / 823930 AraportID:AT3G47760 Length:936 Species:Arabidopsis thaliana


Alignment Length:866 Identity:237/866 - (27%)
Similarity:364/866 - (42%) Gaps:214/866 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   922 MPVFFVVVTILIIKTQGTFQELKPITISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGS 986
            :|:|.|........|..:|    |...|..::...|..::..|:......||:|   ::.:.|  
plant   193 LPIFNVQPRCTPDTTTFSF----PFRQSPLEFHKEVRCVEGLNLWRNNSIEISN---EIFKGY-- 248

  Fly   987 NYGLELTGTQGFEDYILDLGKTIQVRINSRY-LVAATITESKITAWLNNQ----------ALHTA 1040
                    .||..:.|::       .:.:.| |:...|....:|.|.|:.          .....
plant   249 --------RQGNLEEIIN-------EVAAAYDLMDTDINNFNVTIWYNSTYKGDLRDRRVKYVRV 298

  Fly  1041 PLTVNMVHNAIADKLFGSSVKIQ---VTNAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCMCFVS 1102
            |.:||:|.||..:.|.||..|:.   |...|...|            .|..::|| |...:.|..
plant   299 PRSVNLVSNAYLEFLQGSGTKMLFDFVKEMPKQET------------RLRLEMAS-LIGPIFFTW 350

  Fly  1103 SIYILF------LIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETG 1161
            .|.:||      |:.|::...:::..:.|:....:|:          |..|..:.|:||      
plant   351 VILLLFPVMLTSLVYEKQQHLRIIMKMHGLGDGPYWM----------ITYAYFLAISIV------ 399

  Fly  1162 LSTFGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIF---CGMALFIVVVVMSS 1223
                     |.:.|::||.|      |...|||     |...||..||   | :.|.|.:..:.|
plant   400 ---------YIICLMIFGSA------IGLKFFR-----FNDYSIQFIFYFLC-INLQISIAFLVS 443

  Fly  1224 ELFDTKDTADI-----------LG----------------WIF--RIFPHFSLAMSLNKVYTNTA 1259
            ..|...:||.:           ||                ||:  .::|.|||...|.:......
plant   444 SAFSKIETASVAAYLYVFGSGLLGAFLFQFLLEGLSFPRSWIYIMELYPGFSLYRGLYEFSQYAF 508

  Fly  1260 TRNACAKAGALPPILLCELVPQCCNLKPYFAWEE--PGVLPETVYMAVTGVVFFLIIIVLE---- 1318
            .||.....|                    ..|::  ...:.|..|:.:  |.:|:.:|...    
plant   509 KRNLNGSGG--------------------MKWKDFNDSAMEEIFYIII--VEWFVALIAAYYTDK 551

  Fly  1319 ---------FRLINELMFKIRQLISKPPPPPTEGQLDD--------DVANERERILQMSSNELAT 1366
                     |.|.|:..||     ..|.|...:.|:..        |||:||.::.|:.......
plant   552 ISSSGIDPFFFLKNQNPFK-----KSPSPYGLQRQVSAIAIEMEKLDVAHERVKVEQLMLETSTG 611

  Fly  1367 KNLVLDRVTKYY------GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAA 1425
            ..:|.|.:.|.|      .|.|||..:||.|...||||:||.||||||:...||||..:.:||||
plant   612 HAIVCDNLKKVYPCRDGNPQKMAVRGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLMKPTSGAA 676

  Fly  1426 YVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFM 1490
            :|.||.:..:|:.:|..||.|||.|.|.:.|||||.|..:..|:.::.|.:.|..|:..||....
plant   677 FVHGLDICKDMDIVYTSIGVCPQHDLLWETLTGREHLLFYGRLKNLKGSDLDQAVEESLKSVNLF 741

  Fly  1491 KH--IDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIV 1553
            :.  .||....||||.||:||.||::||||.|:|:|||:||:|||:||.||..:.|.::. .:|:
plant   742 RGGVADKPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRRSLWTAIKRAKNH-TAII 805

  Fly  1554 LTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYAR 1618
            ||:|||||.|.||.||.|.|:|..:|:|:.:.||                      ||..|.|..
plant   806 LTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELK----------------------ARYGGSYVL 848

  Fly  1619 NPDEQTVPAQMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQL 1683
            .   .|.|:: .::|::.:   |:...||:.......|...|.||...|:.|.:|..:|..:|..
plant   849 T---MTTPSE-HEKDVEML---VQDVSPNAKKIYHIAGTQKFEIPKEEVRISEVFQAVEKAKDNF 906

  Fly  1684 NVEDYSVSQTTLEEIFLEFAK 1704
            .|..:.::.||||::|::.|:
plant   907 RVFAWGLADTTLEDVFIKVAR 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500
ABC2_membrane_3 <269..475 CDD:289468
CcmA 538..843 CDD:224054
ABC_subfamily_A 538..755 CDD:213230
ABC2_membrane_3 913..1316 CDD:289468 90/447 (20%)
ABC_subfamily_A 1369..1587 CDD:213230 104/225 (46%)
drrA 1376..1702 CDD:130256 129/333 (39%)
ABCA5NP_001326002.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.720

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