DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and ABCA3

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_190358.3 Gene:ABCA3 / 823928 AraportID:AT3G47740 Length:932 Species:Arabidopsis thaliana


Alignment Length:908 Identity:243/908 - (26%)
Similarity:378/908 - (41%) Gaps:203/908 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   880 IFSENRRLLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFV-VVTILI---IKTQGTF 940
            :|:.|...| |..|..|    :|.:.|.....:.|..|..|::...|. ..|..:   |.:.|:.
plant   136 LFTGNNHSL-GAVLSRN----LLRRPFAMNSSDLLFSLANNVLATTFKGSATNYLDAGIVSDGSI 195

  Fly   941 QELKP-------ITISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELTGTQGF 998
            ..::|       .:||:.|.||..| .|...||.          .:|.|:......|||     |
plant   196 YNIQPRCPPNSNFSISIGQSPLNFT-KDMRCVQG----------LNLWRNNSIEVNLEL-----F 244

  Fly   999 EDYILDLGKTIQVRINSRY-LVAATITESKITAWLN--------NQALHT--APLTVNMVHNAIA 1052
            |.|.......:...|.:.| |....:|...:..|.|        ||....  .|..||.|.||..
plant   245 EGYHKGNSDGMINEIVAAYDLFDTNMTNFNVNIWFNATYKDEARNQPYKVVRVPRLVNWVSNAYL 309

  Fly  1053 DKLFGSSVKIQ---VTNAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCMCFVSSIYILF------ 1108
            ..|.|...|:.   |...|.|.|            .|...:|| |...:.|...|.:|.      
plant   310 QYLQGPRTKMLFEFVKEMPKPET------------KLRLDIAS-LIGPIFFTWVILLLLPVILNS 361

  Fly  1109 LIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYYL 1173
            |:.|::.|.:::..:.|:....:|    |..:|.::                .||||     |.:
plant   362 LVYEKQQRLRIIMKMHGLGDGPYW----IISYAYFL----------------ALSTF-----YII 401

  Fly  1174 LLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELFDTKDTADI---- 1234
            .|::||..:....::::.|..:.:..|..::         |.|.:..:.|..|...:||.:    
plant   402 FLMIFGSVIGLKFFLLNDFSLQFSFYFVYIN---------LQISIAFLLSSAFSKVETASVAAYL 457

  Fly  1235 -------LG----------------WIF--RIFPHFSLAMSLNKVYTNTATRNACAKAGALPPIL 1274
                   ||                |||  .::|.|||...|.:...|....|...|.|      
plant   458 YVFGSGLLGMFLFQFLLEGLSFPRRWIFVMELYPGFSLYRGLYEFSQNAYQGNLNGKDG------ 516

  Fly  1275 LCELVPQCCNLK-PYFAWEEPGVLPETVYMAVTGVVFFLIIIV-------------LEFRLINEL 1325
                      :| .||:   ...:.|..|:.:  |.:|:.:|.             |.|.|.|:.
plant   517 ----------MKWKYFS---DNAIDEVFYIII--VEWFVALIATYYIDKMSSSGKDLLFFLKNQN 566

  Fly  1326 MFKIRQLISKPPPPPTEGQLDDDVANERERILQMSSNELATKNLVLDRVTKYY-GQ-----FMAV 1384
            .|||...:.|.....:......||.:|.|::.|:......:..:|.|::.|.| |:     ..||
plant   567 PFKISHSLQKQVSAISVEMEKLDVIHESEKVAQLMLESSTSHAIVCDKLRKVYPGRDGNPPKKAV 631

  Fly  1385 NQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQF 1449
            ..:||.|...||||:||.||||||:...||||..:.:||||:||||.:..:|:.:|..:|.|||.
plant   632 RVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQH 696

  Fly  1450 DALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKH---IDKQTHAYSGGNKRKLSTA 1511
            |.|.:.|||||.|..:..|:.::...:.|..|:..:|.... |   .||....||||.||:||.|
plant   697 DLLWETLTGREHLLFYGRLKNLKGVDLNQAVEESLRSVNLF-HGGVADKPAGKYSGGMKRRLSVA 760

  Fly  1512 IAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1576
            |::||:|.|:|:|||:||:|||:|:.||.::...: ...:|:||:|||||.|.||.||.|.|:|.
plant   761 ISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAK-RHTAIILTTHSMEEAEFLCDRLGIFVDGR 824

  Fly  1577 FKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQRDIDAVKEFV 1641
            .:|||:.:.||.::....:|.:                            ...|:.:.| |:..|
plant   825 LQCIGNPKELKGRYGGSYVLTM----------------------------TTSSEHEKD-VEMLV 860

  Fly  1642 ETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAK 1704
            :...||........|...|.||...|:.|.:|.::|..:....|..:.::.||||::|::.|:
plant   861 QEVSPNVKKIYHIAGTQKFEIPKDEVRISEVFQVVEKAKSNFKVFAWGLADTTLEDVFIKVAR 923

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500
ABC2_membrane_3 <269..475 CDD:289468
CcmA 538..843 CDD:224054
ABC_subfamily_A 538..755 CDD:213230
ABC2_membrane_3 913..1316 CDD:289468 97/463 (21%)
ABC_subfamily_A 1369..1587 CDD:213230 100/226 (44%)
drrA 1376..1702 CDD:130256 121/334 (36%)
ABCA3NP_190358.3 ABC2_membrane_3 <360..511 CDD:289468 34/184 (18%)
CcmA 609..892 CDD:224054 115/313 (37%)
ABC_subfamily_A 614..835 CDD:213230 98/222 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.710

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