Sequence 1: | NP_608445.2 | Gene: | ABCA / 33103 | FlyBaseID: | FBgn0031170 | Length: | 1714 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006233707.2 | Gene: | Abca2 / 79248 | RGDID: | 620238 | Length: | 2435 | Species: | Rattus norvegicus |
Alignment Length: | 1907 | Identity: | 582/1907 - (30%) |
---|---|---|---|
Similarity: | 908/1907 - (47%) | Gaps: | 409/1907 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 135 NATQL--ELDTVSKNAFAGVQF--------------DDAWANLTEND------------------ 165
Fly 166 --PLPNDFHFALRFPAELRTATIAIANT-WLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLP 227
Fly 228 LQHSLSMAYLRQKSGEQDL-PNVVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYI 291
Fly 292 TAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALV 356
Fly 357 FFLIIYIVSSICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTI----NSYDDLSLSSKLGWS 417
Fly 418 LISNTAMGFGIKLILGFEGTGEGLQWSNFF-TPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQ 481
Fly 482 VMPGSFGVPRPWNFPFTREFWCGE-REYTGVEDIPNGH--------------VEQR---DPKAFE 528
Fly 529 TEPEGKHIGLQMRHLKKRFGN--KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTS 591
Fly 592 GTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMI 656
Fly 657 ELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLL 721
Fly 722 LTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKR----------------- 769
Fly 770 -----DDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAK--FEEMFGQLEEQSDELHLN 827
Fly 828 GYGVGITSMEEVFMKVGAE----KDNTGNIKD-QHEIMNGGSGF--------------------- 866
Fly 867 -----------RGED---------------------DNESVQSDGI-----FSENRRLLQGLQLL 894
Fly 895 SNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQELKPITISLTQY------ 953
Fly 954 -----PLA-------------------------------VTVLDRS----------NVQNGTGYE 972
Fly 973 IANKYEDLARSYGSNYGLELT-------------------------------------------- 993
Fly 994 ----------------GTQGF-----------------------------EDYIL---------- 1003
Fly 1004 -------DLGKTIQVRINSRY-LVAATITESKITAWL-NNQALHTAPLTVNMVHNAI------AD 1053
Fly 1054 KLFGSSVKIQVTNAPLPYTTSTL-LSQLSTGNNLGTQLASNLCFCMCFVSSIYILFLIKERESRA 1117
Fly 1118 KLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLLFGFAV 1182
Fly 1183 LPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELF----DTKDTADILGWIFRIFP 1243
Fly 1244 HFSLAMSLNKVYTNTATRNACAKAGALPPILLCELVPQCCNLKPYFAWEEPGVLPETVYMAVTGV 1308
Fly 1309 VFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEGQLDD-DVANERERILQMSSNELATKNLVLD 1372
Fly 1373 RVTKYY-----GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL 1432
Fly 1433 ESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQT 1497
Fly 1498 HAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEEC 1562
Fly 1563 EALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPA 1627
Fly 1628 QMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQ 1692
Fly 1693 TTLEEIFLEFAKYQREDTRANQ 1714 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
ABCA | NP_608445.2 | ABC2_membrane_4 | 254..434 | CDD:289500 | 65/183 (36%) |
ABC2_membrane_3 | <269..475 | CDD:289468 | 77/210 (37%) | ||
CcmA | 538..843 | CDD:224054 | 149/330 (45%) | ||
ABC_subfamily_A | 538..755 | CDD:213230 | 110/218 (50%) | ||
ABC2_membrane_3 | 913..1316 | CDD:289468 | 115/573 (20%) | ||
ABC_subfamily_A | 1369..1587 | CDD:213230 | 120/222 (54%) | ||
drrA | 1376..1702 | CDD:130256 | 145/330 (44%) | ||
Abca2 | XP_006233707.2 | rim_protein | 1..2369 | CDD:130324 | 582/1900 (31%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166342291 | |
Domainoid | 1 | 1.000 | 158 | 1.000 | Domainoid score | I4008 |
eggNOG | 1 | 0.900 | - | - | E2759_KOG0059 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG53524 | |
OrthoDB | 1 | 1.010 | - | - | D131191at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100045 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.660 |