DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abca3 and Abca2

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_063140674.1 Gene:Abca2 / 79248 RGDID:620238 Length:2442 Species:Rattus norvegicus


Alignment Length:1907 Identity:582/1907 - (30%)
Similarity:908/1907 - (47%) Gaps:409/1907 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 NATQL--ELDTVSKNAFAGVQF--------------DDAWANLTEND------------------ 165
            |.|.|  :|||:...|...:||              :::..|.|.|.                  
  Rat   557 NGTALLQQLDTIDNAACGWIQFMSKVSVDIFKGFPDEESIVNYTLNQAYQDNVTVFASVIFQTRK 621

  Fly   166 --PLPNDFHFALRFPAELRTATIAIANT-WLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLP 227
              .||...|:.:|..:.....|..|... |               ..|.:.||  ..|...||:.
  Rat   622 DGSLPPHVHYKIRQNSSFTEKTNEIRRAYW---------------RPGPNTGG--RFYFLYGFVW 669

  Fly   228 LQHSLSMAYLRQKSGEQDL-PNVVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYI 291
            :|..:..|.:....|...: |...::.:|:|.|..|..|..:..:|.|.:::|::|......::|
  Rat   670 IQDMIERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHI 734

  Fly   292 TAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALV 356
            .||||.:||||||.|||:|.:||.|||:..|:.|:||...:..::|..     .||.|::...:.
  Rat   735 VAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYG-----QVLMHSHVLIIW 794

  Fly   357 FFLIIYIVSSICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTI----NSYDDLSLSSKLGWS 417
            .||.:|.|::|.|||:::..:|:|..|:|..|:|:|::|:||.:..    .::|.::...|...|
  Rat   795 LFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIAS 859

  Fly   418 LISNTAMGFGIKLILGFEGTGEGLQWSNFF-TPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQ 481
            |:|.||.|.|.|....:|..|.|:||..|. :||..||...|.|| .|::|..|:|.::..|:|.
  Rat   860 LMSTTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAV-TMLMVDTVVYGVLTWYIEA 923

  Fly   482 VMPGSFGVPRPWNFPFTREFWCGE-REYTGVEDIPNGH--------------VEQR---DPKAFE 528
            |.||.:|:||||.||..:.:|.|. |..|.....|..|              :|.|   :.:..|
  Rat   924 VHPGMYGLPRPWYFPLQKSYWLGSGRTETWEWSWPWAHAPRLSVMEEDQACAMESRHFEETRGME 988

  Fly   529 TEPEGKHIGLQMRHLKKRFGN--KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTS 591
            .||....:.:.:..|.|.:.|  |:.:..||:|::|:::...|||||||||||:|:|||:|||||
  Rat   989 EEPTHLPLVVCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTS 1053

  Fly   592 GTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMI 656
            |:|.|.|.||||.::..|.:||:|||||||||:::|..|:.|:||:|.:..:.:.:|:.|.::.:
  Rat  1054 GSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMAQEEIRKEMDKMIEDL 1118

  Fly   657 ELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLL 721
            ||.:|.:.....|||||||||||..|..|.::.::.|||::|:||.|||.:|||:.:.|.|||:|
  Rat  1119 ELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTIL 1183

  Fly   722 LTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKR----------------- 769
            |:||.|||||:|||||||:..|:|||.|:..|||..||.||||..|||                 
  Rat  1184 LSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAEPGTSQEPGMASSPS 1248

  Fly   770 -----DDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAK--FEEMFGQLEEQSDELHLN 827
                 .:|...:|:..:.|::.......|...||||.||..|..|  ||.:|.|||...|.|||:
  Rat  1249 GRPQLSNCSEMQVSQFIRKHVASSLLVSDTSTELSYILPSEAVKKGAFERLFQQLEHSLDALHLS 1313

  Fly   828 GYGVGITSMEEVFMKVGAE----KDNTGNIKD-QHEIMNGGSGF--------------------- 866
            .:|:..|::||||:||..|    :::..::|: :.:.:.|..|.                     
  Rat  1314 SFGLMDTTLEEVFLKVSEEDQSLENSEADVKESRKDALPGAEGLTAVESQAGNLARCSELAQSQA 1378

  Fly   867 -----------RGED---------------------DNESVQSDGI-----FSENRRLLQGLQLL 894
                       ||::                     |:.|:|...:     ..:..|.|:|..|.
  Rat  1379 SLQSASSVGSARGDEGAGYTDGYGDYRPLFDNLQDPDSVSLQEAEMEALARVGQGSRKLEGWWLK 1443

  Fly   895 SNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQELKPITISLTQY------ 953
            ..|:..:|:|:|....||...|..|.::|.|||.|.:.:..:.....:|.|:.:|.:||      
  Rat  1444 MRQFHGLLVKRFHCARRNSKALCSQILLPAFFVCVAMTVALSVPEIGDLPPLVLSPSQYHNYTQP 1508

  Fly   954 -----PLA-------------------------------VTVLDRS----------NVQNGTGYE 972
                 |.|                               .|.:.:|          |:.:|....
  Rat  1509 RGNFIPYANEERREYRLRLSPDASPQQLVSTFRLPSGVGATCVLKSPANGSLGPMLNLSSGESRL 1573

  Fly   973 IANKYEDLARSYGSNYGLELT-------------------------------------------- 993
            :|.::.|.........||.|:                                            
  Rat  1574 LAARFFDSMCLESFTQGLPLSNFVPPPPSPAPSDSPLSPDEDSLLAWNTSLPPTAGPETWTWAPS 1638

  Fly   994 ----------------GTQGF-----------------------------EDYIL---------- 1003
                            || ||                             .:|:|          
  Rat  1639 LPRLVHEPVRCTCSAQGT-GFSCPSSVGGHPPQMRVVTGDILTDITGHNVSEYLLFTSDRFRLHR 1702

  Fly  1004 -------DLGKTIQVRINSRY-LVAATITESKITAWL-NNQALHTAPLTVNMVHNAI------AD 1053
                   ::.|:|...|.:|. |:...|...::...| ||:..|:.|..:|.::|||      ..
  Rat  1703 YGAITFGNIQKSIPAPIGTRTPLMVRKIAVRRVAQVLYNNKGYHSMPTYLNSLNNAILRANLPKS 1767

  Fly  1054 KLFGSSVKIQVTNAPLPYTTSTL-LSQLSTGNNLGTQLASNLCFCMCFVSSIYILFLIKERESRA 1117
            |...::..|.|||.|:..|:::| |..|..|.::  .:|..:...|.||.:.:::||:.|:.::|
  Rat  1768 KGNPAAYGITVTNHPMNKTSASLSLDYLLQGTDV--VIAIFIIVAMSFVPASFVVFLVAEKSTKA 1830

  Fly  1118 KLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLLFGFAV 1182
            |.||||.|.....:||:.::.|..:|:|.|...:|.:..|.....::.........|.||:|:::
  Rat  1831 KHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSI 1895

  Fly  1183 LPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELF----DTKDTADILGWIFRIFP 1243
            .|.:|..|.:|..|::.:..:.::|:|.|:...:...::  :||    |.|.....|...|.|||
  Rat  1896 TPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLL--QLFEHDKDLKVVNSYLKSCFLIFP 1958

  Fly  1244 HFSLAMSLNKVYTNTATRNACAKAGALPPILLCELVPQCCNLKPYFAWEEPGVLPETVYMAVTGV 1308
            :::|...|.::..|.......||.|            |...:|..|.|:.  |....|.|.|.|.
  Rat  1959 NYNLGHGLMEMAYNEYINEYYAKIG------------QFDKMKSPFEWDI--VTRGLVAMTVEGF 2009

  Fly  1309 VFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEGQLDD-DVANERERILQMSSNELATKNLVLD 1372
            |.|.:.|:.::..:.:         .:..|..|:...|| |||:||:|:|:..::....|   ::
  Rat  2010 VGFFLTIMCQYNFLRQ---------PQRLPVSTKPVEDDVDVASERQRVLRGDADNDMVK---IE 2062

  Fly  1373 RVTKYY-----GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL 1432
            .:||.|     |:.:||:::.|.|:..||||||||||||||:||||:||||..:.|.|:|.|.|:
  Rat  2063 NLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSV 2127

  Fly  1433 ESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQT 1497
            ..::..:.:.:|||||||||.|:||.||.|:::..|||:......|:.....:.....|..||..
  Rat  2128 LKDLLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVRWALEKLELTKCADKPA 2192

  Fly  1498 HAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEEC 1562
            .:||||||||||||||:||.|:.|:||||||||||.|||.|||::..:..:|:|:||||||||||
  Rat  2193 GSYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEEC 2257

  Fly  1563 EALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPA 1627
            ||:||||||||||..:|:||.|||||:|..|.::.::.:                          
  Rat  2258 EAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTK-------------------------- 2296

  Fly  1628 QMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQ 1692
              |.:::..|..|....:|.::|:|.:...:.:.:....:..:::|..||.....|.:|||||||
  Rat  2297 --SSQNVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEHVVGVLGIEDYSVSQ 2359

  Fly  1693 TTLEEIFLEFAKYQREDTRANQ 1714
            |||:.:|:.|||.|.::....:
  Rat  2360 TTLDNVFVNFAKKQSDNVEQQE 2381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 581/1897 (31%)
Abca2XP_063140674.1 None

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