DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and abcg2a

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_021325521.1 Gene:abcg2a / 735312 ZFINID:ZDB-GENE-050517-35 Length:644 Species:Danio rerio


Alignment Length:870 Identity:158/870 - (18%)
Similarity:311/870 - (35%) Gaps:286/870 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   507 EYTGVEDIPNGHVEQRDPKAFETEPEGK---------HIGLQMR--HLKKRFGNKMVVKGLSMNM 560
            |.|||.|:.| ||.    ....:.|..:         :..|:|:  ..|.:...|.::.||: .:
Zfish     7 ELTGVLDLQN-HVN----TGVSSSPSRRGATVSFHNINYSLKMKSGFCKSKSTKKNILIGLN-GI 65

  Fly   561 FEDEITVLLGHNGAGKTTTISMLTGMFPPT--SGTAIINGSDIRTNIEGARMSLGICPQHNVLFD 623
            .:..:..:||..|:||::.:.:|.....|.  ||..:|:|:....|.   :...|...|.:|:..
Zfish    66 MKPGLNAILGATGSGKSSFLDVLAARKDPAGLSGEVLIDGAPQPPNF---KCLSGYVVQDDVVMG 127

  Fly   624 EMSVSNHIRFFSRM---KGLRGKAVEQEVAKYLKMIELEDKANVASSK--------LSGGMKRKL 677
            .::|..::||.:.:   |.::.:..:::|.:.::.:.|   :.||.|:        :|||.:::.
Zfish   128 TLTVRENLRFSAALRLPKSIKQREKDEKVERLIQELGL---SKVADSRVGTQLIRGVSGGERKRT 189

  Fly   678 SVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMC 741
            ::...|..|..|:..|||::|:|.|....:..||:: ...|||::|:.|                
Zfish   190 NIGMELIIDPPVLFLDEPTTGLDASTANSVLMLLKKMGNNGRTIILSIH---------------- 238

  Fly   742 DGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLP-DS 805
                         :.:| |.|||.         :.:|.|             :|.:|.|..| ..
Zfish   239 -------------QPRY-SIYRLF---------DSLTLL-------------VGGKLVYHGPAQD 267

  Fly   806 ASAKFEEMFGQLEEQSDELH-----LNGYGVGITSMEEVFMKVGAEKDNTGNIKDQHEIMNGGSG 865
            |.:.|.::....|..::...     :||....:| :.:::.:|          .||.::   .|.
Zfish   268 ALSYFSQIGYTCEPHNNPADFFLDVINGDSSAVT-LNKLYEEV----------VDQDQL---SSS 318

  Fly   866 FRGEDDN--ESVQSDGIFSEN----RRLLQGLQLLSNQWKAMLL---KKFLYTWRNKLLLLIQNI 921
            .:|.:|.  |..|...||.:.    :|::|| |..|.:.|:..:   ..|.:.:...|....:|:
Zfish   319 LKGIEDRLVEEYQRSSIFQQTHADLQRIVQG-QDYSTRPKSRTITYSTSFCHQFHWVLKRTFRNL 382

  Fly   922 MPVFFVVVTILIIKTQGTFQELKPITISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGS 986
            |                    |.|.| |:.|..:.:.:                           
Zfish   383 M--------------------LNPQT-SVAQIGVMIFL--------------------------- 399

  Fly   987 NYGLELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKITAWLNNQALHTAPLTVNMVHNAI 1051
                                                                  .|.|..:...:
Zfish   400 ------------------------------------------------------ALVVGAIFFGV 410

  Fly  1052 ADKLFGSSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQ--LASNLCFCMCFVSSIYILFLIKERE 1114
            |:...|    ||                    |.:|..  :.:|.||.....:.::|      .|
Zfish   411 AENSSG----IQ--------------------NRMGALFFITTNQCFSSVSAAELFI------AE 445

  Fly  1115 SRAKLLQFVGG-VKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLLF 1178
            .:..:.:::.| .:|..::||:.:.|..: :.|...|:.:.|.:...||....|      ...:|
Zfish   446 RKLFVHEYISGYYRVSVYFLSKILSDILT-LRTIPAVIFSCVAYFMIGLKPAAE------AFFIF 503

  Fly  1179 GFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELFDTKDTADILGWI--FRI 1241
            .|:::...|..:......:.....|:|.|||..:: |:.:::.|..|.:....|..|.|:  |.|
Zfish   504 LFSIIMVSYTATAMTLAISADQTVVAIANIFMTIS-FVFMMIFSGLLVNLPSVATWLNWLKYFSI 567

  Fly  1242 FPHFSL-AMSLNKVYTNTATRNACAKAGALPPILLCE-----LVPQCCNLKPYFAWEEPGVLPET 1300
             |.:.| |:.:|: :|.....:....:|:     :|.     |..|..:...:..|:.       
Zfish   568 -PRYGLSALQINE-FTGLFFCDNRNNSGS-----VCSSGEEFLQEQGIDYSAWGLWQN------- 618

  Fly  1301 VYMAVTGVVF-FLIIIVLEFRLINE 1324
             ::|:..:.| ||.|..|:.|.|.:
Zfish   619 -HLALGIMTFIFLCIAYLKLRFIKK 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500
ABC2_membrane_3 <269..475 CDD:289468
CcmA 538..843 CDD:224054 66/326 (20%)
ABC_subfamily_A 538..755 CDD:213230 49/232 (21%)
ABC2_membrane_3 913..1316 CDD:289468 63/414 (15%)
ABC_subfamily_A 1369..1587 CDD:213230
drrA 1376..1702 CDD:130256
abcg2aXP_021325521.1 PRK10535 43..638 CDD:333000 146/823 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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