Protein Alignment Abca3 and abch1

DIOPT Version :10

• Sequence 1: NP_608445.2
• Gene: Abca3 / 33103
• FlyBaseID: FBgn0031170
• Length: 1714
• Species: Drosophila melanogaster
• Sequence 2: XP_687003.5
• Gene: abch1 / 558667
• ZFINID: ZDB-GENE-050517-42
• Length: 713
• Species: Danio rerio
• Alignment Length: 798
• Identity: 157/798 - (19%)
• Similarity: 303/798 - (37%)
• Gaps: 173/798 - (21%)

  Fly   509 TGVEDIPNG--HVEQR--DPKAFETEPEGKHI--GLQMRHLKKRFGNKMVVKGLSMNMFEDEITV 567
            :|..:..:|  .:|||  :....:|:.|....  .:....:.:.:|...|:..|::.:.:.:|..
Zfish     4 SGTHEALSGSTEMEQRSLESGTMKTDLEAGSFSAAIHCHDVCRSYGKLKVLNNLNLTLPQGQIYG 68

  Fly   568 LLGHNGAGKTTTISMLTGMFPPTSGTAIINGS-DIRTNIEGARMSLGICPQHNVLFDEMSVSNHI 631
            |||.:|.||||.:..:.|....:.|...:.|. ......|.....:|..||...|::|.::||.:
Zfish    69 LLGPSGCGKTTLLKCIVGTLKISRGHITVLGKPPAFPGHEVPGKMVGYMPQDIALYNEFTISNTL 133

  Fly   632 RFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 696
            .||.|:.||..|..|..::..:..::|..|.::..: ||||.:|::|:..||..:.|:::.|||:
Zfish   134 WFFGRIHGLSSKETEARMSFLIDFLDLPQKHSLVKN-LSGGQRRRVSLGAALLQNPKLLILDEPT 197

  Fly   697 SGMDPSARRQLWD-LLQQEKVGR-TLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYG 759
            .|:||..|.::|. |::..:.|: ::::|||:::||. ..:.:.:|.:|.|..:|....:.||:.
Zfish   198 VGVDPVLRAKIWQHLVEIVRGGQVSIIITTHYIEEAR-QANTVGLMRNGRLLAEGPPDAVMKQHN 261

  Fly   760 SGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEEQSDEL 824
                                                           :|..|..|.||.|.||:
Zfish   262 -----------------------------------------------AATLETAFLQLCEDSDQ- 278

  Fly   825 HLNGYGVGITSMEEVFMKVGAEKDNTGNIKDQHEIMNGGSGFRGEDDNESVQSDGIFSENRRLL- 888
                              .|.::...|.:.|                 .|...|.:..|.|..:
Zfish   279 ------------------SGPKQSPQGRLLD-----------------SSPSPDSMRDEIREPIL 308

  Fly   889 -----QGLQLLSNQWKAMLLKKFLYTWRNKLLLLI---------------QNIMPVFFVVVTILI 933
                 :.:......|| :..:..:..|.|...|:|               |.::||..:.:..|.
Zfish   309 RKSTSEEMPKCKADWK-VRARHIIPKWSNIAALMIKTMVRMRRLPGSLCFQFLLPVIQICLMCLC 372

  Fly   934 IKTQGTFQELKPITISLTQYPLA-----VTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELT 993
            |  .|..:.:....::....|.|     ::.||.::: |......::.::.:..  |..:|:...
Zfish   373 I--GGDPKNIDVAVVNNESSPSAFSRSLLSFLDNTSI-NQVSLSHSDAFDGIRN--GEYWGVIEF 432

  Fly   994 GTQGFEDYILDLGKTIQVRINSRYLVAATITESKITAWL---NNQALHTAPLTVNMVHNAIADKL 1055
            | :.|..|:..  :.:|.|: ||.:|..    ..:.|||   |.|........::....|..:|.
Zfish   433 G-ENFTSYLTK--RMLQPRV-SREVVEG----GSVHAWLDLTNRQIALMLQKKLHQAFEAFMEKR 489

  Fly  1056 FGS-SVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCMCFVSSIYILFLIKERESRAKL 1119
            .|| |..:.|   |:.:......|:   ..:..|.:.......:.|..::.:..|....|.:..|
Zfish   490 LGSMSYMVAV---PIKFEEPIYGSK---NTDFTTFVTPGAVLSITFYLAVGLTALSFVLERKEGL 548

  Fly  1120 LQ--FVGGVKVWTFWLSQFICD-FASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLLFGFA 1181
            |.  :|.||......|:..... |...:...|:::.|::.|   .:...|.|.....|::|.|..
Zfish   549 LDRCWVAGVSSLETMLAHLFSQLFVISVQIILLLIFTLLVF---NIPNEGSLALVISLIVLQGVT 610

  Fly  1182 VLPF-IYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPH- 1244
            .:.| :.|.|....|.:...|         .:.:|...:::|..:           |.....|:
Zfish   611 GISFGLVISSAIDDEQSANQA---------ALGVFYPNLILSGVI-----------WPVECIPYP 655

  Fly  1245 -FSLAMSLNKVYTNTATR 1261
             ..|::.|.:.|.:.|.|
Zfish   656 LRYLSLVLPQTYASEALR 673

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abca3	NP_608445.2	rim_protein	<137..1708	CDD:130324	157/798 (20%)
abch1	XP_687003.5	None