DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abca3 and CG31213

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_732473.2 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster


Alignment Length:1874 Identity:520/1874 - (27%)
Similarity:873/1874 - (46%) Gaps:358/1874 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VTNWDKFVLLLWKNWTLQWNHKWQMV----IELVLPAIFSLLLVLVRTL----VDTEQK-GVRYY 59
            :|...|:.|||||:..||..:..::|    :..::|..||:...:.:::    ::.|:. |.:..
  Fly     5 LTYCQKYRLLLWKDIKLQLTNWVELVMIIFLSALMPIFFSIGTKVAKSIFPPDIEMEKSPGPKSV 69

  Fly    60 NEQNLTDLNLLQHSLHRSSYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEE---- 120
            |.....|                                      |.::|.|.:|::|:.:    
  Fly    70 NTSLFVD--------------------------------------LYFTPNNGILEQLITQLANI 96

  Fly   121 -AWQSLGKNKICESENATQLELDTVSKNAFAGVQFDDAWANLTENDPLPNDFHFALRFPAELRTA 184
             .::|:   ::.::.:...|:| .:::||. |:.|...|.::..   .|...:..:..|..::..
  Fly    97 SEFKSV---EVFDTNSELYLQL-MINRNAI-GIAFPSEWYDIKS---CPEVLNLTIFMPLSIKRK 153

  Fly   185 TIAIANTWLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQK-SGEQDLPN 248
            ...                                |...|||.||..:|..::..| :|...:|.
  Fly   154 DFK--------------------------------YFESGFLLLQERISKIFIFFKNAGNGKIPR 186

  Fly   249 VVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLH 313
            |:|..:|:|:|:.:...|. :..|:.:.|:||..||..|.||:.||||:..|.|:..||.||.:|
  Fly   187 VLMNHFPYPSYVPNHYAES-AKAMTYMTLISFFLPCITIAKYVVAEKERHQKAVLTAMGFSNSIH 250

  Fly   314 WTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFFS 378
            |.||:.||.::|     |:.:|:.|:......:...::...|:...::||.|.:.|.|.:::|||
  Fly   251 WLAWYTKSMLLL-----LLCLLIMISIFSIGLIYEFSSLVCLMTIFLVYIHSLVLFAFFISSFFS 310

  Fly   379 RASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEGLQW 443
            |:.:|...|.|::|...:|  |.|...::.|::::...|:..|:|:.:.:..:...|....|.||
  Fly   311 RSLSAVVATILMYFSTALP--FLIVGAENSSVAAQTAASIGLNSALFYILDSVAVMEMQSVGAQW 373

  Fly   444 SNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFWCGEREY 508
            .......|....|::...|::|:....|.::||||:|.|..|.|.||:||::||.|.:||..|..
  Fly   374 YTIDNTASSGYKLSIVGYMLIMISISWIELLICLYIEAVRTGEFEVPQPWSYPFQRRYWCPLRYG 438

  Fly   509 TGV---------------EDIPNGH--------VEQRDPKAFETEPEGKHIGLQMRHLKKRFGNK 550
            :.|               .::|..|        ::.|..:.|:.....|.||:::|.|.|.||.:
  Fly   439 SSVFHQGALLPLAGKNSEGNLPAAHPTRQPIIYLDDRTQENFQRVNISKKIGIEVRSLSKTFGFR 503

  Fly   551 MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC 615
            .|||.|..|::|:|||.|:||.|:||||.|.||.|:..||:||.:|||.||.|..:.|:.|||||
  Fly   504 NVVKDLFFNVYENEITALVGHKGSGKTTIIMMLCGILQPTTGTVLINGYDIVTEAKVAKSSLGIC 568

  Fly   616 PQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVC 680
            |||:|:|..||..:||.||||:||........|...|:..:.|.|.....:.:||.|.:|:||:.
  Fly   569 PQHSVIFKGMSARDHIYFFSRVKGYNKTEAMMESNIYISKLGLVDSQKWDAMRLSPGNQRRLSLA 633

  Fly   681 CALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 745
            ||||..:||:||||||||:||..|.:|...||:||.|||:|:||..::|.::|.||||||.||::
  Fly   634 CALCAGSKVILCDEPSSGLDPIGRHELMRFLQKEKHGRTILMTTQQLEEGEILADRIAIMNDGQI 698

  Fly   746 KCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKF 810
            .|.||..:||:...:.|.|.|....:.:.:.:|.|:..|:.........|.::||:||.|...:|
  Fly   699 LCYGTLGYLKQLPFTSYTLSCQMAPNSKADNLTDLVRLYMTTTTSPVFHGVDVSYKLPRSQIDRF 763

  Fly   811 EEMFGQLEEQSDELHLNGYGVGITSMEEVFMKV-----------GAE------------------ 846
            .|.|.||||....|::..:||..::::.:::.:           ||:                  
  Fly   764 PEFFQQLEENKKSLNVVSFGVSDSTLDGIYLSLDYGQGSSRLRGGADPGVNDKVEFGVQTDKAIR 828

  Fly   847 -KDNTGN--IKDQHEIMNGGSGFRGEDDNESVQSDGIFSENRRLLQGLQL----------LSNQW 898
             ||...|  ::.||::         :..||::.:      .:..:..:::          ...||
  Fly   829 TKDRANNSLVRYQHQV---------DPPNETILN------TKTPINPIEIWRPIDREKGSCMAQW 878

  Fly   899 KAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTF-----------QELKPITISLTQ 952
            :||.:||..||....|:.::..|:|:|:.::.:      ||.           |.:.|:::....
  Fly   879 QAMFIKKKNYTASRALIFILILIIPLFYYIIVL------GTAASEKCAHRTDKQPVLPLSLDYYS 937

  Fly   953 YPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELT-------GTQGFEDYILDLGKTIQ 1010
            |...:.:|:..              :.|.:|.|..| ::|.       .......::|.....|:
  Fly   938 YDDMIILLEVD--------------KQLYKSEGEAY-VQLVKEPATVESVDSIFSHLLKAPPIIR 987

  Fly  1011 VRINSRYLVAATITE-SKITAWLNNQAL-HTAPLTVNMVHNAIADKLFG---------------- 1057
            ..|..:|:..|:... |.||||.|:.|. |:||:.:|:|:||:...:|.                
  Fly   988 RDIKRKYVCGASFNNASTITAWFNSDAFEHSAPIALNLVYNALGKAVFEDQDFSILVNRGDLHDF 1052

  Fly  1058 ------------------------SSVKIQ---VTNAPLPYTTS------------------TLL 1077
                                    |..:||   |...|...:||                  :::
  Fly  1053 IWLNNASSMRRRYKRQNDPDYTDYSDYEIQEYDVVVKPNSSSTSGQHNKSNPGDDNIITVQMSII 1117

  Fly  1078 SQLSTGNN--------LGTQLASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLS 1134
            ...||..|        .||.:.......:|.  ||:.:|:.|||....|:.|.:.||.::.||.:
  Fly  1118 EAASTLYNEKGKRKQLFGTLIIITAYIALCL--SIFSIFVTKERVEHFKMQQEIYGVTLFYFWST 1180

  Fly  1135 QFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYY---LLLLLFGFAVLPFIYIMSLFFREP 1196
            .|:.||..|.:  .:..:||..:..|         .:|   ::|||.|||.|||:|:.||.|..|
  Fly  1181 HFVGDFLIYAI--YMGALTIAIYHFT---------IWYQVVVMLLLIGFACLPFVYLCSLLFSLP 1234

  Fly  1197 ATGFARVSIVNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSLAMSLNKVYTNTATR 1261
            ...||.:..:.:..|..||..:.:::. :.|...|.     :|.|.|.:.....|.|.   .|.|
  Fly  1235 NIAFAGIFAILVMTGGMLFSFMYMLTL-ITDVNFTT-----VFAILPMYVGTFGLFKC---LAWR 1290

  Fly  1262 NACAKAGALPPI--LLCELVPQC---CNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFRL 1321
            ..|.:. .||||  |.|:. ..|   |..||...|.|..:|      .|..:|:|:.:....|..
  Fly  1291 EYCNRE-VLPPIEELDCKF-GNCNVFCACKPERTWMEVWLL------MVHCLVWFIFLWFSNFGY 1347

  Fly  1322 INELMFKIRQLISKPPPPPTEGQLDDDVANERERILQMSSNELATKNLVLDRVTKYYGQFM-AVN 1385
              |:.::.:..:|.......|..:  .|.:|..|:..:...|.....:::|:|||.|.:.. ||.
  Fly  1348 --EIGYRFKPKLSNRIWHNNEKHI--RVLDEERRVGLIPKYEHEDYPIIVDQVTKNYCRAKNAVQ 1408

  Fly  1386 QVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFD 1450
            .||..::..:.|||||..|||||:.|:|:.|:..:|.|..||:|.||..:.|:....:|:|||.|
  Fly  1409 LVSFAIRPGDTFGLLGAQGAGKTSIFQMIAGETSMSHGNIYVRGHSLREHRNAAKMEVGFCPQGD 1473

  Fly  1451 ALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVI 1515
            .....||||::|||.|:|.||.:..|:.:||.:|..|.|...:|:..|.||||.||||:.|:| |
  Fly  1474 NAPKYLTGRQLLRIHCLLHGVPKDHIKAVSEQMAIEFNFKDQLDRPIHTYSGGKKRKLNIALA-I 1537

  Fly  1516 GSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCI 1580
            .|.||:.||:....:|.|.:|.:|..:..::.||:.::||:.||||..|:|:|:|.:|.||...|
  Fly  1538 DSGSVLCLDDTNGSVDHATQRFIWRKLEAVKRSGRPVLLTTQSMEEANAVCSRVAFLVAGEMMFI 1602

  Fly  1581 GSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQRDIDAVKEFVETEY 1645
            ||.|.::::.|..::::::|                  ||.:..:..:..|...|..:.|     
  Fly  1603 GSLQQVRSEVSNTIVIRLRV------------------NPSDGKLKRRFQQLIADMAELF----- 1644

  Fly  1646 PNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQTTLEEIF 1699
            |.:.|.|..:..|.::|.:.....:.:|..||..|::..:||||::|.:|:||:
  Fly  1645 PLATLHEALETCLIYHININVTTLANLFYQMEKIRNEGLLEDYSITQVSLDEIY 1698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 497/1727 (29%)
CG31213NP_732473.2 rim_protein <118..1698 CDD:130324 494/1717 (29%)

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