DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abca3 and Abca17

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_001026792.2 Gene:Abca17 / 381072 MGIID:3625331 Length:1733 Species:Mus musculus


Alignment Length:1785 Identity:597/1785 - (33%)
Similarity:947/1785 - (53%) Gaps:200/1785 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQHS 73
            |..||||||:.|:.......::|:::|.:|..:::.:|                    ||.:...
Mouse     6 KLKLLLWKNFILKRRKTLITLLEMLMPLLFCAIVLYLR--------------------LNSMPRK 50

  Fly    74 LHRSSYLGKLIALIAP---NRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKICESEN 135
            ...::|....::|:..   |...|    |||:  |.|.|......|.|.|         :.|...
Mouse    51 KSSTNYPAVDVSLLPVYFYNYPLK----SKFQ--LAYIPSKSETLKAVTE---------VVEQTF 100

  Fly   136 ATQLEL---------------DTVSKNAFAGVQFDDAWANLTENDPLPNDFHFALRFPAELRTAT 185
            |...|:               |..|.....|:.|...:.  :.|:|||....:.|||....|...
Mouse   101 AVDFEVLGFPSVPLFEDYIIKDPKSFYILVGIIFHHDFN--SSNEPLPLVVKYDLRFSYVQRNFV 163

  Fly   186 IAIANT--------WLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSG 242
            ....:.        |.|..|:|......||.....||| .|||.:||||.:||::..|.:|..:.
Mouse   164 SPPRHLFFQEEIEGWCTAFLYPPNLSQAPREFSYADGG-NPGYNKEGFLAIQHAVDKAIMRHHAP 227

  Fly   243 E------QDLPNVVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKE 301
            :      :|| :|:::|:||..:|.||.|..:.:...|:::||||.....||..:.:|||::.||
Mouse   228 KAALNMFKDL-HVLVQRFPFGPHIQDPFLVILQNEFPLLLMLSFICVELIITNSVLSEKERKQKE 291

  Fly   302 VMKIMGLSNWLHWTAWFVKSFI--MLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIV 364
            .|.:||:.:||||.|||:..||  .:|:|.:.:....|||   .|||..::|.|.:..||:.:.:
Mouse   292 YMSMMGVESWLHWVAWFITFFISVSITVSVMTVLFCTKIN---RVAVFRNSNPTLIFIFLMCFAI 353

  Fly   365 SSICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIK 429
            ::|.|.|||:|||.||.....:.|.::|..|:||.:...||...:.:.|:...|.||.||..|::
Mouse   354 ATIFFAFMMSTFFQRAHVGTVIGGTVFFFTYLPYMYITFSYHQRTYTQKILSCLFSNVAMATGVR 418

  Fly   430 LILGFEGTGEGLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWN 494
            .|..||..|.|:||.|.   .||....:...|:.|:|:...:|.:|...||.:.|..||:|:.| 
Mouse   419 FISLFEAEGTGIQWRNI---GSVWGDFSFAQVLGMLLLDSFLYCLIAFLVESLFPRKFGIPKSW- 479

  Fly   495 FPFTREFWCGEREYTGVEDIPN----GHVEQRDPKAF-ETEPEGKHIGLQMRHLKKRF----GNK 550
            :.|.::         .|.:||.    |..|:.....| :.||..:...::::||.|.|    ..:
Mouse   480 YIFAKK---------PVPEIPPLLNIGDPEKPSKGNFMQDEPTNQMNTIEIQHLYKVFYSGRSKR 535

  Fly   551 MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC 615
            ..::.||||:::.::|||||||||||||..|:|||:..|:.|.|.|:|.:|..::...|.|||.|
Mouse   536 TAIRDLSMNLYKGQVTVLLGHNGAGKTTVCSVLTGLITPSKGHAYIHGCEISKDMVQIRKSLGWC 600

  Fly   616 PQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVC 680
            |||::|||..:|::|:.|:.::|||..:...::..:.|.::.|:||.|..|..||||||||||:.
Mouse   601 PQHDILFDNFTVTDHLYFYGQLKGLSPQDCHEQTQEMLHLLGLKDKWNSRSKFLSGGMKRKLSIG 665

  Fly   681 CALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 745
            .||...:||::.|||:||:|..:||.:||||||:|..||:|||||||||||:|||||||:..|||
Mouse   666 IALIAGSKVLILDEPTSGLDSPSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 730

  Fly   746 KCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKF 810
            :|.|:..|||::||:||.:..:|...|:|::::.::..:||....|.:||.|:...||.....:|
Mouse   731 QCCGSPSFLKQKYGAGYYMTIIKTPLCDTSKLSEVIYHHIPNAVLESNIGEEMIVTLPKKTIHRF 795

  Fly   811 EEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDNTGNI--KDQHEIMNGGSGFRGEDDNE 873
            |.:|..||.:..||.::.:...:|:|||||::|....|.:.|:  :.:|.:.......|...|..
Mouse   796 EALFNDLELRQTELGISTFATSVTTMEEVFIRVCKLADPSTNVLTEKRHSLHPLPRHHRVPVDRI 860

  Fly   874 SVQSDGIF----SENRRLLQGLQLLSNQWKAMLLKKFLYTWRNKLLLL-IQNIMPVFFVVVTILI 933
            .....|.|    .:..||..|..||..|:.||||||..|:.||.:|:| :|.::|:..:::::  
Mouse   861 KCLHSGTFPVSTEQPMRLNTGFCLLCQQFYAMLLKKITYSRRNWMLVLSVQVLLPLAIIMLSL-- 923

  Fly   934 IKTQGTFQELK-------PITISLTQYPLAVT---VLDRSNVQNGTGYEIANKYEDLARSYGSNY 988
                 ||...|       |:.::|..|...:.   :.:.|::..    ::::.:..:..:.| ..
Mouse   924 -----TFFNFKLRKLDNVPLELTLQTYGQTIVPFFIAENSHLDP----QLSDDFVKMLVAAG-QV 978

  Fly   989 GLELTGTQGFEDYILDLGKTIQVRINSRYLVAATITE----SKITAWLNNQALHTAPLTVNMVHN 1049
            .|.:.|:  .||::|...|......:..|:|||:..:    :.:.|..||||.|:..|.:.:|.|
Mouse   979 PLRIQGS--VEDFLLKKAKEAPEGFDKLYVVAASFEDVNNHTTVKALFNNQAYHSPSLALTLVDN 1041

  Fly  1050 AIADKLFGSSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCMCFVSSIYILFLIKERE 1114
            .:...|.|::..|..||.|.|.|...:...:......|..|..|..|.:.|:||.:.:..:.|:.
Mouse  1042 LLFKLLSGANASITTTNYPQPQTAIEVSESILYQGPKGHYLVVNFLFGIAFLSSSFSILTVGEKS 1106

  Fly  1115 SRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLLFG 1179
            .::|.||||.||....||||..:.|..|::|..|::|:..:.::|...:....:....|:::|:|
Mouse  1107 VKSKSLQFVSGVSTAVFWLSALLWDLISFLVPTLLLVLVFLWYKEEAFAHHESIPAVVLIMMLYG 1171

  Fly  1180 FAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPH 1244
            :||:|.:|.:|..|..|.:...::.::..|..::..::|.|.|.:.....:.:|.|..||.|.|.
Mouse  1172 WAVIPLVYTVSFSFNTPGSACVKLVVMLTFLSISPVVLVTVTSEKDLGYTELSDSLDHIFLILPG 1236

  Fly  1245 FSLAMSLNKVYTNTATRNACAKAGALPPILLCELVPQCCN--LKPY------FAWEEPGVLPETV 1301
            ..|.|:|:.:|.|...:..|: |..|..|        .||  |:.|      :|||..|:.....
Mouse  1237 HCLGMALSNLYYNFELKKFCS-AKNLSDI--------DCNDVLEGYVVQENIYAWESLGIGKYLT 1292

  Fly  1302 YMAVTGVVFFLIIIVLEFRLINELMFKIRQL--------------ISKPPPPPTEGQLDDDVANE 1352
            .:||.|.|:..::.:.|......|..::...              :::|.        |:||..|
Mouse  1293 ALAVLGPVYITMLFLTEANAFYVLKSRLSGFFPSFWKEKSGMIFDVAEPE--------DEDVLEE 1349

  Fly  1353 RERILQMSSNELATKNLVLDRVTKYYGQ---FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMM 1414
            .|.|.:.....:....||:..|:|.|..   .:|||:||..|:|.|||||||:||||||:.|.|:
Mouse  1350 AETIKRYLETLVKKNPLVVKEVSKVYKDKVPLLAVNKVSFVVKEEECFGLLGLNGAGKTSIFNML 1414

  Fly  1415 TGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQL 1479
            |.::.|:||.|:|:|.:::|::..:.:.|||||:|||||:.:||||:|.::..:||:.|..|:..
Mouse  1415 TSEQPITSGDAFVKGFNIKSDIAKVRQWIGYCPEFDALLNFMTGREMLVMYARIRGIPECHIKAC 1479

  Fly  1480 SEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCR 1544
            .:.:.::.......||....|||||||.|||.||::|.|:||.||||:|||||.|||.||:.|.|
Mouse  1480 VDLILENLLMCVCADKLVKTYSGGNKRMLSTGIALVGEPAVILLDEPSTGMDPVARRLLWDTVER 1544

  Fly  1545 IRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQ 1609
            :|:|||:||:|||||||||||||||||||.|:|||:||.||||:||.....|:.||||       
Mouse  1545 VRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGISYSLQAKVRR------- 1602

  Fly  1610 ARLSGGYARNPDEQTVPAQMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVKWSRIFG 1674
                              :..|:.::..|.||:..:|.|.|::|:|.:|.:|:|...:.|:::|.
Mouse  1603 ------------------KWQQQMLEEFKAFVDLTFPGSNLEDEHQNMLQYYLPGPNLSWAKVFS 1649

  Fly  1675 LMESNRDQLNVEDYSVSQTTLEEIFLEFAK 1704
            :||..:....:||||:||.:||:|||.|.:
Mouse  1650 IMEQAKKDYMLEDYSISQLSLEDIFLNFTR 1679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 568/1654 (34%)
Abca17NP_001026792.2 rim_protein <209..1684 CDD:130324 542/1544 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1681..1733
Blue background indicates that the domain is not in the aligned region.

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