DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and CG1801

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_728408.3 Gene:CG1801 / 33104 FlyBaseID:FBgn0031171 Length:1655 Species:Drosophila melanogaster


Alignment Length:1777 Identity:407/1777 - (22%)
Similarity:783/1777 - (44%) Gaps:232/1777 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQHSLHRS 77
            ||:|.:.....:.|:..:..::..:..:|::.:..:  ...|.:.|...:|..:.:::.|.|...
  Fly     7 LLFKRYIRIELNLWRRTLFEIVALVIMVLVIFLNPI--AHSKRLLYTTTENENEQSIVSHKLQDI 69

  Fly    78 SYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKIC--ESENATQLE 140
            :.|.::    |.::|.|.      ::||.::|......::.:...::|..:...  |||:..|.:
  Fly    70 NILTRM----ADSKREKT------KYILAFTPETTFTSEVTKNVAKTLELSSTVGYESESEMQNQ 124

  Fly   141 LDTVSKNAFAGVQFDDAWANLTENDPLPNDFHFALRFPAELRTAT--IAIANTWLTM---RLFPT 200
            .|  .:...||:.|:|     ..:|..|.....::|||:|.||..  :.....|:|.   |:.|.
  Fly   125 FD--ERTTLAGIVFND-----LRDDGTPLTLSISIRFPSEFRTIAPFLTEDRLWITRCSGRINPG 182

  Fly   201 IDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGEQDLPNVVMKRYPFP-AYIFDPL 264
            .|    |.:.|....|   |:|||||.|||.:.:.:..|      |...::..||.| ..:::.|
  Fly   183 RD----RAKHDKQQDI---YIREGFLQLQHQIFVEWYHQ------LRKDIVSTYPEPNVEVYNIL 234

  Fly   265 LEGMS---SIMSLIILLSFIYPCTYITKYITAEKE--KQLKEVMKI----MGLSNWLHWTAWFVK 320
            |:...   |:||:..|.:|:|...|:..::...:.  .|:::.:.:    .|.|..:.|...|:.
  Fly   235 LKAADEPCSVMSVAQLPTFLYNFIYLLPFLNIIRNVAAQVEDGVMVHQWHYGYSFGMQWGIKFLV 299

  Fly   321 SFIMLTISAILIAILVKINW--SEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFFSRASTA 383
            .|:.:.|..::..|::...|  .......:.....|.|.|:.:|.|..|....::|..|:..:.|
  Fly   300 LFLRMCILGVIYTIMLLAFWGFGGREGEFSGTGTIAFVCFITLYTVEIIITGMVVAKLFANPTNA 364

  Fly   384 AAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLIS--NTAMGFGIKLILGFEGTGEGLQWSNF 446
            .....::|...|..:...:..|.|:. ...:.:.|::  |..|.|.:.|            :.|.
  Fly   365 VLFALMLWLFMYAAFCIILERYWDIH-KYYVFFILVAFCNCQMHFSMSL------------FRNC 416

  Fly   447 FTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSF-------GVPRPWNFPFTREFWCG 504
            .....:.:|:....:....:.|.:||.:|.|.::..|||:|       ..||......|...:.|
  Fly   417 IEKPEMVNTIDFVLIFTSAISSALIYFLILLAIQWRMPGTFLSRRIVNNRPRKQQESDTTIMYLG 481

  Fly   505 EREYTGVEDIPNGHVEQRDP--KAFETEPEGKHIGLQMRHL--KKRFGNKMVVKGLSMNMFEDEI 565
                             |.|  :.||....|....:::||:  ..|...:.::|.:||.::..|:
  Fly   482 -----------------RAPSFQNFEFGDVGSVELMRLRHVSTSHRDSERKILKNISMRIYRGEV 529

  Fly   566 TVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNV---LFDEMSV 627
            .|:|||.|:||.|.:.:|.|:..|..|...|.|:....|.|..|:......:|.:   |..|.::
  Fly   530 FVILGHIGSGKLTLLRILAGLKFPLRGNVYIMGNPFEPNGEARRLVDFRFDEHGLNKHLTVEQTI 594

  Fly   628 SNHIRFFSRMKGLRGKAVEQEVAKYLKMIELE-DKANVASSKLSGGMKRKLSVCCALCGDTKVVL 691
            ..|:|.  ::........|.|..|:|.:::.. :...|...|||.|..:.:::||.|.|||.:::
  Fly   595 DYHVRL--KLSPSESDRYEIERRKWLAILDQHVESRGVRIGKLSSGSMKLVALCCCLAGDTPIII 657

  Fly   692 CDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKK 756
            .:||::.:.....:..|.::..||..|..::.|:.:.||:.:.|||.|:..|.|:..||.|||:.
  Fly   658 LEEPTTQLTGREAQIFWSIVHAEKENRAFIIATYNVGEAEHVADRIGILSMGVLEASGTPFFLRS 722

  Fly   757 QYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEEQS 821
            ::.|...|:.:|:.......:|..:|:::..::||.:||..|:|:||.....:.:::...||...
  Fly   723 KFSSSVDLVIIKKPHVPDQPITDYINQFMQNIEPENEIGDSLTYRLPVIYRPRLQKLLIHLEIDR 787

  Fly   822 DELHLNGYGVGITSMEEVFMKVGAEKDNTGNIKDQHEIMNGGSGFRGEDDNESVQSDGIFSENRR 886
            ..|.:....|           ||||      :.|.:  |...:.||.:   :.:..|...:...:
  Fly   788 KMLGIENVRV-----------VGAE------LSDIY--MTLVTSFRLQ---QQMIPDVTQTFKYQ 830

  Fly   887 LLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQEL-----KPI 946
            ::...||...:.:||..||.::|..|     :..|:.:|...|.|.||.......::     ..|
  Fly   831 VVSQKQLTKQRMRAMFYKKMIHTAPN-----VWPIIMIFTSFVLIAIIARLSVLLDMPKERQNSI 890

  Fly   947 TISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELTGTQGFED---------YI 1002
            .|...:....|..|  .|::: .|      |.|:..:...|....:..::.|:|         |.
  Fly   891 HIGFREPEDVVKYL--PNLKD-CG------YIDIRSAVKVNKKKSVGVSRTFDDDSFVCEKGSYR 946

  Fly  1003 LDLGKTIQVRINSRYLVAATITESKITAWLNNQALHTAPLTVNMVHNAIADKLF--GSSVKIQVT 1065
            .:|.|..::|   .:....:..:..:..:::....|:||:.:|::.|.|....:  .:.:.:.|.
  Fly   947 NNLRKKNELR---SFGAVESDGDEHLNGYISQDMFHSAPMMLNLLQNVILRLSYPMQTDLVVLVE 1008

  Fly  1066 NAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCM---CFVS---SIYILFLIKERESRAKLLQFVG 1124
            |.|||       :|||...|:.....:::...:   |.:.   |::::.|::|.....:.||.:.
  Fly  1009 NHPLP-------TQLSQKINVLDNKIAHIHVPLVVGCIIPLTVSVFVIPLVEEEIYDVRFLQHMA 1066

  Fly  1125 GVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFG--ELGRYYLLLLLFGFAVLPFIY 1187
            |:.:..||......|:.::.|.::|:|:.:...   |:..||  |.....:||..||.|.||..|
  Fly  1067 GLGLKVFWGINLFWDWFTFFVYSVIIVVIMSLM---GIGGFGFYENAIMVVLLTTFGLAALPLTY 1128

  Fly  1188 IMSLFFREPATGFARVSIVNIF----CGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSLA 1248
            ::|:|..:   ...|..:|::.    .|:.|:|:       .:|..::..|..:...:.|.|||.
  Fly  1129 LVSMFVNK---SIVRAFLVSVLLQGVSGLVLYII-------YWDVANSNTIFFYAACMSPGFSLL 1183

  Fly  1249 MSLNKVYTNTATRNACAKAGALPPILLCELVPQC-----------CNLKPYFAWEEPGVLPETVY 1302
            ..::.||.....:..|        |..||....|           |....:|.|..||:||..:|
  Fly  1184 DGVSNVYAQNLEQAIC--------IDKCEATDSCTEENMNEVVPNCKFDTFFKWAAPGILPPILY 1240

  Fly  1303 MAVTGVVFFLIIIVLEFRLINELMFKIRQLIS-KPPPPPTEGQLDDDVANERERILQMSSNELAT 1366
            |.::.::|.::|..:|.....:.....|.|.. :....|.:   |.|||:.:::|.:..:.:...
  Fly  1241 MVLSALIFLMLIFWIELHRREKKFHTSRDLRKMRTATYPFD---DGDVADVKQKIAEADNTKAKQ 1302

  Fly  1367 KNLVLDRV-TKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGL 1430
            ...::|:| .:.......::.||..:.:....|:.|...:||:...:.:.|....:.|..||:||
  Fly  1303 SVFLVDQVEARVPAAGKRIHTVSFALNKYMSMGIFGPRNSGKSHLMRQLVGQRGFAFGEIYVRGL 1367

  Fly  1431 SLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDK 1495
            ..:.::.||:..:||.||...||::||.||.:|:.||:|||.|::|.:...||.........:.:
  Fly  1368 DFKYDLESIHTYMGYSPQHRGLLNELTPREHIRLLCMIRGVPEAKIGEKMHDLCLMLNMTGWMHR 1432

  Fly  1496 QTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSME 1560
            :....:...:.||..|:|::....::.|||||.||....||::||::..||..||:|:..::...
  Fly  1433 KCSLLTAEKRHKLKIALALVAYNKILVLDEPTCGMPATTRREIWNILRYIRYCGKTIIFATNDEL 1497

  Fly  1561 ECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTV 1625
            ||:.|...:.:..:.|...|||.|:|:.|:|.|..|::::.|:...|.::           |:.:
  Fly  1498 ECKILADFIILFQDSEMLAIGSLQYLRYKYSHGFYLEVRLIRDGATLAES-----------EENL 1551

  Fly  1626 PAQMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSV 1690
                 ::|::.:.:||...:..|.|.........||:|:..:.:|.::|.||.|:.:|||.||.:
  Fly  1552 -----RKDVENLAKFVNFLHNRSELVGRLNNWFKFYVPVGHIVYSFLYGAMEKNKLRLNVSDYCI 1611

  Fly  1691 SQTTLEEIFLEFAKYQREDTRA 1712
            .|..:..:..     |.::|||
  Fly  1612 YQADMMSVVA-----QVQETRA 1628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 39/193 (20%)
ABC2_membrane_3 <269..475 CDD:289468 39/218 (18%)
CcmA 538..843 CDD:224054 81/310 (26%)
ABC_subfamily_A 538..755 CDD:213230 63/222 (28%)
ABC2_membrane_3 913..1316 CDD:289468 92/441 (21%)
ABC_subfamily_A 1369..1587 CDD:213230 64/218 (29%)
drrA 1376..1702 CDD:130256 89/325 (27%)
CG1801NP_728408.3 ABC2_membrane_3 <246..379 CDD:289468 25/132 (19%)
ABC2_membrane_4 <293..448 CDD:289500 30/167 (18%)
EcfA2 499..717 CDD:224047 60/219 (27%)
P-loop_NTPase 500..721 CDD:304359 63/222 (28%)
ABC2_membrane_3 <972..1254 CDD:289468 71/309 (23%)
EcfA2 1307..1521 CDD:224047 63/213 (30%)
P-loop_NTPase 1324..1524 CDD:304359 62/199 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451227
Domainoid 1 1.000 40 1.000 Domainoid score I3722
eggNOG 1 0.900 - - E2759_KOG0059
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 228 1.000 Inparanoid score I138
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 1 1.000 - - otm51427
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X215
109.900

Return to query results.
Submit another query.