DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and CG1494

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster


Alignment Length:1814 Identity:463/1814 - (25%)
Similarity:848/1814 - (46%) Gaps:242/1814 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQ-- 71
            ||:|:.|||..||..:..::::.|::|.:|:|:.||:|..:....:....|:..:| |.:.:|  
  Fly     9 KFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNHRSDTVYDPIDL-DRSWMQMV 72

  Fly    72 ------------HSLHRSSYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQS 124
                        :::..:.:...|:...||.|      :..|:.::     ..|.|::  |...|
  Fly    73 EKLEKARQVADTYNVKGNPFTPHLVIGWAPKR------YGIFQAMM-----RRVQKQI--EPMTS 124

  Fly   125 LGKNKICESENATQLELDTVSKNAFAGVQFD---------------DAWANLTENDPLPNDFHFA 174
            :|      .|:..::....:....|||:.||               ::::|:   .|:.|   :.
  Fly   125 VG------FEDCEEMRESVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNI---QPMLN---YT 177

  Fly   175 LRFPAELR--TATIAIANTWLTM-----RLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSL 232
            :..|:|||  .....:|| |:|:     ..|....|..|.     :||. .||:||||:.||.|:
  Fly   178 ILLPSELRMLDGDFRMAN-WMTLYNDDPNTFVLTRLNQPY-----EGGF-VGYVREGFIRLQKSV 235

  Fly   233 SMAYLRQKSGEQDLPNVVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEK 297
            |.::|...| .:.||.:.::|:|......|||:..::..|..||::.|::|.......:.:||:.
  Fly   236 SESFLVLTS-HKSLPTIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQS 299

  Fly   298 QLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIY 362
            |:::.:..|.:.|.:|:.:|::|..|...||:::||.|:||.|.:|..|||...:..|:..|..|
  Fly   300 QVRQFLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCY 364

  Fly   363 IVSSICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFG 427
            ..:::.|..|:|.||..|..|..|..::|.::|:|.....|:.:....:.:.....:.|......
  Fly   365 NCAAVAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLV 429

  Fly   428 IKLILGFEGTGEGLQWSNFFTPVSVD-DTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPR 491
            |:.::..|.... :.|.:....::.| ..:|:.|...:.:::.::|..|.|||:.          
  Fly   430 IEFLIERESIVH-ITWEDSGYRLNYDGGHITVTASSWIFMLNALVYCAIGLYVDM---------- 483

  Fly   492 PWNFPFTREFWCGEREYTGVEDIPNGHVE-QRDP--------------------KAFETEPEGKH 535
             |.        .|:|....::. ||.:.. |.||                    |.:|.||..:.
  Fly   484 -WR--------GGDRSGKKMKK-PNTNASVQEDPYHERGDSFTHQGQAIGVNSTKIYEVEPSHRR 538

  Fly   536 IGLQMRHLKKRF--GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING 598
            ..|:::.|.|||  .::..:...|.|::|:|:|||:||||.||:|.:.:|.|:..|:.||.:|:.
  Fly   539 FKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPSRGTVMISS 603

  Fly   599 SDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKAN 663
            .:|:|..:.|.|.|||...|::|....:|.:::||..|:|||...            ||::.::|
  Fly   604 HNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKGLHNN------------IEIDGQSN 656

  Fly   664 VASSKLS-GGMKRK------------LSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEK 715
            ...:.|. ||:|.|            :|:|||..|::.::|.|:..|.:|...:..:|:|:.:||
  Fly   657 YFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEK 721

  Fly   716 VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTAL 780
            ..||::|.::....|:.:.||:|||.:|||||.||..|||..||.||||.|||..:.:.:|:..:
  Fly   722 SKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVKGKNYKRDELFGM 786

  Fly   781 LNKYIPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGA 845
            :|.|:|.:..|.|||.::::.|.:....:|..:...|||...:|.:..:.:..|||||:|::.|.
  Fly   787 MNSYMPNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLRFGC 851

  Fly   846 EKDNTGNIKDQHEIMNGGSGFRGEDDNESVQSDGIFS-------ENRRLLQGLQLLSNQWKAMLL 903
            |.::.......||             |..|..:..:|       :.||  .|.:|.....:|::.
  Fly   852 EDNDQSGAFQSHE-------------NAQVLLEEYYSTLAEANEKGRR--TGWKLFFLHGRAVIY 901

  Fly   904 KKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQELKPITISLTQYPLAVTVL----DRSN 964
            |:::...|:.::|:.:.:......|.|...|...|...||:|:|.:|:|.......:    :..:
  Fly   902 KRWIAAHRHWIVLIFEVLAMALVAVCTFSSIFIYGKNYELEPLTFNLSQLHTVDAFVELFSEEED 966

  Fly   965 VQNGTGYEIANKYEDLARSYGSNYGLELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKIT 1029
            |::...|     |.:|...|.::.. .||..: ...|.|.........:||||:..||..:..:|
  Fly   967 VKDMHAY-----YTELLYWYDAHVA-TLTKNR-HNAYALLTQNQFTAHVNSRYIFGATFDQKIVT 1024

  Fly  1030 AWLNNQALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLSQLST----GNNLGTQL 1090
            ||.||..||:||..:|:||||:|..||.....|.||.||||:.|:     ::|    .:..|..|
  Fly  1025 AWFNNIPLHSAPYALNVVHNAVARHLFDEEATIDVTLAPLPFRTA-----INTFPPSSHTFGGCL 1084

  Fly  1091 ASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIV 1155
            |..:||.:.|:...:.:::|.||.|..|..||:.||:|.::|....:.|....::....||:.:.
  Fly  1085 AFGICFVLTFIWPAFAIYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVA 1149

  Fly  1156 CFQETG--LSTFGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVV 1218
            .::...  :..:|.:.   :.|:|.||.|:...|:|:...|.|..||..:..:|.. |:..|   
  Fly  1150 LYENPNHDVMLYGYIS---VTLMLGGFWVILLAYLMASLCRNPCYGFLWLCGINSI-GLVCF--- 1207

  Fly  1219 VVMSSELFDTKDTADILGWIFRIFPHFSLAMSLNKVYTNTATRNACAKAGALPPIL--------L 1275
                |:.:.|...:.:|...|...  :::|..:.|::.....:..|     :.|::        .
  Fly  1208 ----SQFYRTHPESMLLEPTFMAM--YTVATVICKLFMIYEFKLIC-----MDPVVNFTSVEVFK 1261

  Fly  1276 CELVPQCCNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPP 1340
            |..:|.|| :|..:.....|:..:.|.:.:..::....:.|.|:..|  |.|...:|.::....|
  Fly  1262 CNSIPNCC-IKSNYGTFTAGIYHDLVILTLLDIILLACLFVSEYHSI--LGFADCRLDTRTNESP 1323

  Fly  1341 TEGQ--------LDDDVAN--ERERILQMSSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVE 1395
            ...|        |.:|.|.  ::|...:::..|.:....|...:...|.:...:..:...:.:.|
  Fly  1324 DSNQESRAFPGILSNDTAALVDKEHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSE 1388

  Fly  1396 CFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGRE 1460
            |..:.|.|.:||||..|::..:.::::|..::...|:.::....|:|:|||||.|:|..:.|.||
  Fly  1389 CLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRE 1453

  Fly  1461 VLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1525
            :|.|..||:|.:....|:|||.|.:..|.....::.....:.|..|:|..|.||:|||.:|.:|.
  Fly  1454 LLYIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDG 1518

  Fly  1526 PTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCI----GSTQHL 1586
            ...|:||..:|.:..|...::..|.|.:.|..:..:.|.|..|..:::.|:...|    ..|::.
  Fly  1519 VPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENY 1583

  Fly  1587 KNKFSKGLILKIKVRRNLEALRQA-RLSGGYARNPDEQTVPAQMSQRDIDAVKEFVETEYPNSIL 1650
            |:.:...:..|.||..|:...|.. .|...:..:|:::             ...|:|.::|:::|
  Fly  1584 KSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKK-------------FSAFMEIKFPDAVL 1635

  Fly  1651 QEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQRED 1709
            ..|....:.|.:||....:|.||..:..:..::|:|||.:::..|.. |..|...|.:|
  Fly  1636 TIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNIEDYFITRNMLVG-FQIFTYDQHQD 1693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 47/179 (26%)
ABC2_membrane_3 <269..475 CDD:289468 49/206 (24%)
CcmA 538..843 CDD:224054 110/319 (34%)
ABC_subfamily_A 538..755 CDD:213230 79/231 (34%)
ABC2_membrane_3 913..1316 CDD:289468 102/420 (24%)
ABC_subfamily_A 1369..1587 CDD:213230 61/221 (28%)
drrA 1376..1702 CDD:130256 85/330 (26%)
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 53/217 (24%)
CcmA 541..848 CDD:224054 110/318 (35%)
ABC_subfamily_A 541..761 CDD:213230 79/231 (34%)
ABC2_membrane_3 911..>1189 CDD:289468 81/292 (28%)
ABC2_membrane <1080..>1188 CDD:304374 28/110 (25%)
ABC_subfamily_A 1370..1577 CDD:213230 59/206 (29%)
PRK14255 1371..1586 CDD:172743 61/214 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450241
Domainoid 1 1.000 40 1.000 Domainoid score I3722
eggNOG 1 0.900 - - E2759_KOG0059
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 228 1.000 Inparanoid score I138
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 1 1.000 - - otm51427
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X215
109.900

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