DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abca3 and CG1494

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_608444.2 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster


Alignment Length:1814 Identity:463/1814 - (25%)
Similarity:848/1814 - (46%) Gaps:242/1814 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQ-- 71
            ||:|:.|||..||..:..::::.|::|.:|:|:.||:|..:....:....|:..:| |.:.:|  
  Fly     9 KFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNHRSDTVYDPIDL-DRSWMQMV 72

  Fly    72 ------------HSLHRSSYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQS 124
                        :::..:.:...|:...||.|      :..|:.::     ..|.|::  |...|
  Fly    73 EKLEKARQVADTYNVKGNPFTPHLVIGWAPKR------YGIFQAMM-----RRVQKQI--EPMTS 124

  Fly   125 LGKNKICESENATQLELDTVSKNAFAGVQFD---------------DAWANLTENDPLPNDFHFA 174
            :|      .|:..::....:....|||:.||               ::::|:   .|:.|   :.
  Fly   125 VG------FEDCEEMRESVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNI---QPMLN---YT 177

  Fly   175 LRFPAELR--TATIAIANTWLTM-----RLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSL 232
            :..|:|||  .....:|| |:|:     ..|....|..|.     :||. .||:||||:.||.|:
  Fly   178 ILLPSELRMLDGDFRMAN-WMTLYNDDPNTFVLTRLNQPY-----EGGF-VGYVREGFIRLQKSV 235

  Fly   233 SMAYLRQKSGEQDLPNVVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEK 297
            |.::|...| .:.||.:.::|:|......|||:..::..|..||::.|::|.......:.:||:.
  Fly   236 SESFLVLTS-HKSLPTIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQS 299

  Fly   298 QLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIY 362
            |:::.:..|.:.|.:|:.:|::|..|...||:::||.|:||.|.:|..|||...:..|:..|..|
  Fly   300 QVRQFLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCY 364

  Fly   363 IVSSICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFG 427
            ..:::.|..|:|.||..|..|..|..::|.::|:|.....|:.:....:.:.....:.|......
  Fly   365 NCAAVAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLV 429

  Fly   428 IKLILGFEGTGEGLQWSNFFTPVSVD-DTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPR 491
            |:.::..|.... :.|.:....::.| ..:|:.|...:.:::.::|..|.|||:.          
  Fly   430 IEFLIERESIVH-ITWEDSGYRLNYDGGHITVTASSWIFMLNALVYCAIGLYVDM---------- 483

  Fly   492 PWNFPFTREFWCGEREYTGVEDIPNGHVE-QRDP--------------------KAFETEPEGKH 535
             |.        .|:|....::. ||.:.. |.||                    |.:|.||..:.
  Fly   484 -WR--------GGDRSGKKMKK-PNTNASVQEDPYHERGDSFTHQGQAIGVNSTKIYEVEPSHRR 538

  Fly   536 IGLQMRHLKKRF--GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING 598
            ..|:::.|.|||  .::..:...|.|::|:|:|||:||||.||:|.:.:|.|:..|:.||.:|:.
  Fly   539 FKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPSRGTVMISS 603

  Fly   599 SDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKAN 663
            .:|:|..:.|.|.|||...|::|....:|.:::||..|:|||...            ||::.::|
  Fly   604 HNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKGLHNN------------IEIDGQSN 656

  Fly   664 VASSKLS-GGMKRK------------LSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEK 715
            ...:.|. ||:|.|            :|:|||..|::.::|.|:..|.:|...:..:|:|:.:||
  Fly   657 YFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEK 721

  Fly   716 VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTAL 780
            ..||::|.::....|:.:.||:|||.:|||||.||..|||..||.||||.|||..:.:.:|:..:
  Fly   722 SKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVKGKNYKRDELFGM 786

  Fly   781 LNKYIPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGA 845
            :|.|:|.:..|.|||.::::.|.:....:|..:...|||...:|.:..:.:..|||||:|::.|.
  Fly   787 MNSYMPNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLRFGC 851

  Fly   846 EKDNTGNIKDQHEIMNGGSGFRGEDDNESVQSDGIFS-------ENRRLLQGLQLLSNQWKAMLL 903
            |.::.......||             |..|..:..:|       :.||  .|.:|.....:|::.
  Fly   852 EDNDQSGAFQSHE-------------NAQVLLEEYYSTLAEANEKGRR--TGWKLFFLHGRAVIY 901

  Fly   904 KKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQELKPITISLTQYPLAVTVL----DRSN 964
            |:::...|:.::|:.:.:......|.|...|...|...||:|:|.:|:|.......:    :..:
  Fly   902 KRWIAAHRHWIVLIFEVLAMALVAVCTFSSIFIYGKNYELEPLTFNLSQLHTVDAFVELFSEEED 966

  Fly   965 VQNGTGYEIANKYEDLARSYGSNYGLELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKIT 1029
            |::...|     |.:|...|.::.. .||..: ...|.|.........:||||:..||..:..:|
  Fly   967 VKDMHAY-----YTELLYWYDAHVA-TLTKNR-HNAYALLTQNQFTAHVNSRYIFGATFDQKIVT 1024

  Fly  1030 AWLNNQALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLSQLST----GNNLGTQL 1090
            ||.||..||:||..:|:||||:|..||.....|.||.||||:.|:     ::|    .:..|..|
  Fly  1025 AWFNNIPLHSAPYALNVVHNAVARHLFDEEATIDVTLAPLPFRTA-----INTFPPSSHTFGGCL 1084

  Fly  1091 ASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIV 1155
            |..:||.:.|:...:.:::|.||.|..|..||:.||:|.::|....:.|....::....||:.:.
  Fly  1085 AFGICFVLTFIWPAFAIYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVA 1149

  Fly  1156 CFQETG--LSTFGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVV 1218
            .::...  :..:|.:.   :.|:|.||.|:...|:|:...|.|..||..:..:|.. |:..|   
  Fly  1150 LYENPNHDVMLYGYIS---VTLMLGGFWVILLAYLMASLCRNPCYGFLWLCGINSI-GLVCF--- 1207

  Fly  1219 VVMSSELFDTKDTADILGWIFRIFPHFSLAMSLNKVYTNTATRNACAKAGALPPIL--------L 1275
                |:.:.|...:.:|...|...  :::|..:.|::.....:..|     :.|::        .
  Fly  1208 ----SQFYRTHPESMLLEPTFMAM--YTVATVICKLFMIYEFKLIC-----MDPVVNFTSVEVFK 1261

  Fly  1276 CELVPQCCNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPP 1340
            |..:|.|| :|..:.....|:..:.|.:.:..::....:.|.|:..|  |.|...:|.::....|
  Fly  1262 CNSIPNCC-IKSNYGTFTAGIYHDLVILTLLDIILLACLFVSEYHSI--LGFADCRLDTRTNESP 1323

  Fly  1341 TEGQ--------LDDDVAN--ERERILQMSSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVE 1395
            ...|        |.:|.|.  ::|...:::..|.:....|...:...|.:...:..:...:.:.|
  Fly  1324 DSNQESRAFPGILSNDTAALVDKEHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSE 1388

  Fly  1396 CFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGRE 1460
            |..:.|.|.:||||..|::..:.::::|..::...|:.::....|:|:|||||.|:|..:.|.||
  Fly  1389 CLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRE 1453

  Fly  1461 VLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1525
            :|.|..||:|.:....|:|||.|.:..|.....::.....:.|..|:|..|.||:|||.:|.:|.
  Fly  1454 LLYIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDG 1518

  Fly  1526 PTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCI----GSTQHL 1586
            ...|:||..:|.:..|...::..|.|.:.|..:..:.|.|..|..:::.|:...|    ..|::.
  Fly  1519 VPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENY 1583

  Fly  1587 KNKFSKGLILKIKVRRNLEALRQA-RLSGGYARNPDEQTVPAQMSQRDIDAVKEFVETEYPNSIL 1650
            |:.:...:..|.||..|:...|.. .|...:..:|:::             ...|:|.::|:::|
  Fly  1584 KSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKK-------------FSAFMEIKFPDAVL 1635

  Fly  1651 QEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQRED 1709
            ..|....:.|.:||....:|.||..:..:..::|:|||.:::..|.. |..|...|.:|
  Fly  1636 TIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNIEDYFITRNMLVG-FQIFTYDQHQD 1693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 432/1669 (26%)
CG1494NP_608444.2 rim_protein <223..1689 CDD:130324 409/1561 (26%)
ABC_subfamily_A 541..761 CDD:213230 79/231 (34%)

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