DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and CG43672

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_788912.3 Gene:CG43672 / 318910 FlyBaseID:FBgn0263747 Length:1690 Species:Drosophila melanogaster


Alignment Length:1816 Identity:404/1816 - (22%)
Similarity:767/1816 - (42%) Gaps:273/1816 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 FVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQHSL 74
            |.||:|||:..|.::|..:::.||||.:.||.|:.:|:..|:   .:|.|:.:  .:..||:.|.
  Fly     9 FCLLVWKNFQKQKHNKLVLILSLVLPVMSSLFLLFIRSSSDS---NMRDYSIR--AEAELLEFSW 68

  Fly    75 HRSSYLGKLIALIAPNRRR-----KNGGFSKFEFI----LCYSP-VNPVLKKLVEEAW--QSLGK 127
              ||.:||:      ..||     |...|:...||    :.::| .|..|::|:.:|.  .|:.:
  Fly    69 --SSLIGKI------QERRAKMASKQRNFTTNVFIPDIRVAFAPNSNAALRRLMGDALGKLSMSE 125

  Fly   128 NKICESENATQLELDTVSKNAFAGVQFDDAWANLTEN-DPLPNDFHFALRFPAELRTATIAIANT 191
            :||.:.||...:.:...|::..|.|.|    .|:.|: :.||...:||:..|:|||.    ..:|
  Fly   126 DKIVDFENCNDMRIHAASEHYLASVCF----RNVDESLNGLPTVLNFAIIMPSELRN----YEDT 182

  Fly   192 WLTMRLFPTIDL----TGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGE-QDLPNVVM 251
            |:......|..|    ....:|.|:||  ...|:.|||:|||:.:||.:||..:.: :.||.|||
  Fly   183 WIGDSWKETTTLMDRDVAEEDEFDEDG--YTDYMGEGFVPLQYHISMQFLRATASKVEKLPKVVM 245

  Fly   252 KRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTA 316
            :|:.....:.  |.||:.:.:.|:|||.|::|.|.:|..|..|:|...:.::||:..|..|...|
  Fly   246 RRFNENPNVL--LSEGIGTSVVLLILLGFMFPVTILTTLIVEERELGQRYMLKILNASATLQMAA 308

  Fly   317 WFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFFSRAS 381
            ||...|....|:::||.||:||.|:...|.:....:..|:.|||.|..|......:|.:...|:.
  Fly   309 WFFNVFTHFLITSLLITILLKIEWNGATAAVNKCPWPILLCFLISYGCSVTSLIILMTSAMRRSR 373

  Fly   382 TAAAVTGLIWFIAYIPYSFTINSYDDLSLSSK----------LGWS--LISNTAMGFGIKLILGF 434
            .|..:..:||.:..:|.           ||.|          .|::  |:.|.:...|:..|...
  Fly   374 VAMVMAPIIWILLALPL-----------LSKKELLSDGPDVFYGFATVLLCNVSFSRGLSKIFYI 427

  Fly   435 EGTGEGLQWSNFFTPVSVDDTL--TLGAVMIMMLVSC---VIYMIICLYVEQVMPGSFGVPRPWN 494
            |                 |.||  |:|..|...:...   :...|:|.||:.:    |.......
  Fly   428 E-----------------DYTLGVTIGKYMFYRVSKSDFGIFVPIVCFYVQTI----FCTLLAMI 471

  Fly   495 FPFTREFWCGER------EYTGVEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHLKKRFGNK-MV 552
            |.....||...|      :|....... |.::::.|:...::...:.: ::.|.:.:::.|. .|
  Fly   472 FENNAYFWLAIRVKNLLKKYHATRSAV-GRLKRQIPEVSFSKTSAEAL-IEFRGVWQKYSNSTYV 534

  Fly   553 VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 617
            |:.:::|::..|:..|||||.:||:|.|.||.|...|..|...::|.:|.|..:.|..:..|...
  Fly   535 VQDITLNVYAGEVVALLGHNASGKSTIIKMLYGRTRPKLGEIYLSGFNIVTQRKEALKNSSISMS 599

  Fly   618 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCA 682
            :..||.|:.|.:|:.|.||::||.....:.|....|:.::|||......:.|:.|.:|.|...||
  Fly   600 YKTLFTELVVLDHLVFLSRLRGLSKTEAKLEAKALLRYLKLEDWEKTLVNDLTIGQRRVLQFLCA 664

  Fly   683 LCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKC 747
            ..|..::|:.|:|..|:|.......:.|:..:|..|::..|::....|..:.|||.::..|:|:.
  Fly   665 FAGGNQIVILDKPFDGIDEQRTSLFYSLILDQKKNRSIFFTSNNQKVASGIADRIFVLSKGKLQA 729

  Fly   748 QGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKFEE 812
            .||...|.:.....||||....:.|...:|.|.:..:||.::.:..:....|:.:......:...
  Fly   730 FGTVKKLCRMLNESYRLIIFGNEKCSFKDVYAFMATFIPEIEMDSILADCASFLVKHKYHTELIN 794

  Fly   813 MFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDNTGNIKDQHEIMNGGSGFRGEDDNESVQS 877
            :...|....::|::..:.:...|::::...:        ..:|:..:..|..|.      :::.:
  Fly   795 LIENLARLKNDLNVYSFEIHECSIDDILASL--------YTRDKSTLEFGQPGL------QTLLA 845

  Fly   878 DGIFSENRRLLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQE 942
            ....|..||.:.....|..:.:.:|:.    ..||..|.:::..:|...||.|:.:.......::
  Fly   846 SRQQSAKRRFIIPTMYLLEELRQLLIA----DTRNWFLPILKLTLPSLVVVWTLSMPYFWHNCRQ 906

  Fly   943 LKPITISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELTGTQGFEDYILDLGK 1007
            ...||..::.:...:.::.:..:.:          |.|..|       |:....|    :.::.|
  Fly   907 PGHITFPMSDHGDGIILMQKDTLDS----------ELLVAS-------EMYAKVG----VTEVDK 950

  Fly  1008 TIQVR---INSRY----LVAATITES------KITAWLNNQALHTAPLTVNMVHNAIADKLFGSS 1059
            |:.:.   .|..|    |..|.|.|:      :|....|.:..||||.::....|::|.......
  Fly   951 TVDITTFIYNYEYKNSLLSDADIMEAVIFSNVQIEVLFNTKWPHTAPDSLAQALNSLAVAFIDGD 1015

  Fly  1060 VKIQVTNAPLPYTT-STLLSQLS-TGNNLGTQLASNLCFCMCFVSSIYILFLIKERESRAKLLQF 1122
            ..|:|....||::| .||...|: .|.:|  ..||.|.||.||:.||.:|.:...|:.|...::.
  Fly  1016 AGIKVELEVLPFSTIHTLQLHLNIDGYDL--IFASCLSFCFCFIWSIPLLHMTLSRDGRYNYVEL 1078

  Fly  1123 VGGVKVWTFWLSQFICDFASYIVTALIVVITIVCF-----QETGLSTFGELGRYYLLLLLFGFAV 1182
            :.|:......::..|.:....::....:.|.::.|     .::.:..:.....:.:...:|...:
  Fly  1079 IAGMPTIVLIVAFLIYELLVVLLALFPINIAVIFFHWDLLMDSNIHIYSVYVMFIIAACVFSLNI 1143

  Fly  1183 L---------PFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSEL--FDTKDTADILG 1236
            |         ||:|:                  .:....:|.|:|.:...||  |...:||..| 
  Fly  1144 LITIMPISDMPFVYL------------------KVLLAYSLGILVYIAVKELRPFTNPNTAHFL- 1189

  Fly  1237 WIFRIFPHFSLAMSLNKVYTNTATRNACAKAGALPPILL---CELVPQCCNLKPYFAWEEPGVLP 1298
             :....|.::|..:|.::.:.:.....|:........:.   |..:|.||:          ....
  Fly  1190 -LLDFHPFYALLHNLMRIASISEKIWLCSDRQIYETSVYADQCNTIPNCCD----------DDAQ 1243

  Fly  1299 ETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPP--------------------TEG 1343
            |..::.....|:.|:::|    .|:..:|....::.:.|..|                    ...
  Fly  1244 EFYHLRYLCCVYLLLVVV----WISIFIFLKSHMVKRRPRQPKYFWDSDPDSKYDQNILHIMEPS 1304

  Fly  1344 QLDDDVANERERILQMSSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKT 1408
            :|::...:|:.|:..:..|.:.:|.|.::.::.::|...|:..:...|...:...:.|.||.||:
  Fly  1305 ELENTWIHEKSRVSTLERNHIESKALHVEHLSVFFGLKAAIKHIDFMVNRYQVMSVFGANGTGKS 1369

  Fly  1409 TTFKMMTGDERISSGAAYVQGLSL---ESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRG 1470
            ...|.:.|....||| ..:...::   ..:::|.: |:||..|....:..:|..|...:...:|.
  Fly  1370 VLLKTILGIYTPSSG-RIISSKTVPFKSKDLDSCH-MVGYSAQEFQTMQLMTILETWDLILRIRR 1432

  Fly  1471 VQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAAR 1535
            .::...|..:..|.|.||..|:........|.|..::||..||::....:|.||:|.|.:|..::
  Fly  1433 SKQISFRAEATKLCKIFGLYKYRFNSLSICSQGVLKRLSLGIALMSDAELILLDDPFTHLDIVSQ 1497

  Fly  1536 RQLWNMVCRIRDSGKSIVLT-SHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIK 1599
            |.:.:::..:|..|.||:.| |.:.....||  |:|.:.......||..:.::..:.....: ::
  Fly  1498 RSMLHIIHDLRRRGHSIIYTCSDTAYSTPAL--RMATLSYPGIAVIGEREEMQQNYYSSYYM-VE 1559

  Fly  1600 VRRNLEALRQARLSGGYARNPDEQTVPAQMSQRDIDAV------KEF------------------ 1640
            .|.:|..|       |...:.|.|:..|:..:......      :||                  
  Fly  1560 TRIHLAEL-------GSPIDFDSQSTEAKEDRAGTTGTLLRHKHQEFSAAFTDSADRWKYLKLCG 1617

  Fly  1641 -VETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQTTLEEIFL 1700
             :|..:|::|::......:.|::.......|||...:..|:.  :...:||||.::..:||
  Fly  1618 VIENVFPHAIIKNVSFPRVCFWLSSHMYPMSRIVDTLHRNKQ--DFYSFSVSQPSVNSVFL 1676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 51/191 (27%)
ABC2_membrane_3 <269..475 CDD:289468 55/222 (25%)
CcmA 538..843 CDD:224054 78/305 (26%)
ABC_subfamily_A 538..755 CDD:213230 64/217 (29%)
ABC2_membrane_3 913..1316 CDD:289468 79/436 (18%)
ABC_subfamily_A 1369..1587 CDD:213230 53/221 (24%)
drrA 1376..1702 CDD:130256 75/354 (21%)
CG43672NP_788912.3 rim_protein <266..>732 CDD:130324 129/499 (26%)
ABC_subfamily_A 519..737 CDD:213230 64/217 (29%)
P-loop_NTPase 1330..1517 CDD:422963 45/188 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451215
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X215
65.950

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