Sequence 1: | NP_608445.2 | Gene: | ABCA / 33103 | FlyBaseID: | FBgn0031170 | Length: | 1714 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038965774.1 | Gene: | Abca1 / 313210 | RGDID: | 631344 | Length: | 2263 | Species: | Rattus norvegicus |
Alignment Length: | 1927 | Identity: | 632/1927 - (32%) |
---|---|---|---|
Similarity: | 974/1927 - (50%) | Gaps: | 348/1927 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 24 HKWQMVIELVLPAIFSLL-----LVLVRTLVDTEQKGVRYYNEQNLTDLNLLQHSLHRSSYLGKL 83
Fly 84 IALIAPNR---RRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKICESENATQLE----- 140
Fly 141 -------LDTVSKNAF-AGVQFDDAWANLTENDPLPNDFHFALRFPAELRTATIAIANTWLTMRL 197
Fly 198 FPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGEQDLPNVVMKRYPFPAYIFD 262
Fly 263 PLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTI 327
Fly 328 SAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFFSRASTAAAVTGLIWF 392
Fly 393 IAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSVDDTLT 457
Fly 458 LGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFWCGEREYTGVEDIPNGHVEQR 522
Fly 523 DPKAFETEPEGKHIGLQMRHLKK--RFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTG 585
Fly 586 MFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVA 650
Fly 651 KYLKMIEL-EDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQE 714
Fly 715 KVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRD------DCE 773
Fly 774 -----------------------------------TNEVTA---LLNKYIPGLKPECDIGAELSY 800
Fly 801 QLPDSASAK--FEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAE--------------KDN 849
Fly 850 TGNIKDQHEIMNGGSGFRGED---------DNESVQSD---GIFSENRRLLQGLQLLSNQWKAML 902
Fly 903 LKKFLYTWRNKLLLLIQNIMPVFFVVVTI---LIIKTQGTFQELK-------------------- 944
Fly 945 --------------------------PITISL------TQYPLAVTVLD---RSN---------- 964
Fly 965 ---------------------------------VQNGTG-----YEIANKYEDLARS-------- 983
Fly 984 ---YGS-NYGLE----LTGTQGFEDYILDLGKTIQVRINS---RYL------VAATITESKITAW 1031
Fly 1032 LNNQALHTAPLTVNMVHNAI--ADKLFG---SSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQLA 1091
Fly 1092 SNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVC 1156
Fly 1157 FQETGLSTFGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVM 1221
Fly 1222 SSELFDT---KDTADILGWIFRIFPHFSLAMSLNKVYTNTATRNACAKAGA---LPPILLCELVP 1280
Fly 1281 QCCNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEGQL 1345
Fly 1346 DDDVANERERILQ-MSSNELATKNLVLDRVTKYYGQFM--AVNQVSLCVQEVECFGLLGVNGAGK 1407
Fly 1408 TTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQ 1472
Fly 1473 ESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQ 1537
Fly 1538 LWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRR 1602
Fly 1603 NLEALRQARLSGGYARNPDEQTVPAQMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGV 1667
Fly 1668 KWSRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQRED 1709 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
ABCA | NP_608445.2 | ABC2_membrane_4 | 254..434 | CDD:289500 | 68/179 (38%) |
ABC2_membrane_3 | <269..475 | CDD:289468 | 77/205 (38%) | ||
CcmA | 538..843 | CDD:224054 | 151/353 (43%) | ||
ABC_subfamily_A | 538..755 | CDD:213230 | 116/219 (53%) | ||
ABC2_membrane_3 | 913..1316 | CDD:289468 | 132/544 (24%) | ||
ABC_subfamily_A | 1369..1587 | CDD:213230 | 121/219 (55%) | ||
drrA | 1376..1702 | CDD:130256 | 153/327 (47%) | ||
Abca1 | XP_038965774.1 | rim_protein | 1..2238 | CDD:130324 | 632/1927 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 158 | 1.000 | Domainoid score | I4008 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG53524 | |
OrthoDB | 1 | 1.010 | - | - | D131191at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000051 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100045 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.830 |