DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and Abca9

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_038943368.1 Gene:Abca9 / 287788 RGDID:1305931 Length:1653 Species:Rattus norvegicus


Alignment Length:1824 Identity:453/1824 - (24%)
Similarity:807/1824 - (44%) Gaps:368/1824 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQHSLHRS 77
            ||.|||.    .|::|..|.:|..:.|.||:|:...:.:....|....|.::.||..:. ..:.|
  Rat    45 LLCKNWL----RKFRMRRETLLEWLLSFLLILLAYQLSSNLHQVHDAPEMSMMDLGRVD-DFNDS 104

  Fly    78 SYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKICESENATQLELD 142
            :|    |.:.||.....:.       |:..:.:.|.:|          |:..:...:.::..||:
  Rat   105 NY----IIVFAPESETTHE-------IMNIAALAPFMK----------GRTIVACPDESSMSELN 148

  Fly   143 TVSKNAFAGVQFDDAWANLTENDPLPNDFHFALRFPAELRTATIAIANTWLTMRLFPT---IDLT 204
            .........|.|.|.             |.:.|:|             :| ..|:..|   .|.|
  Rat   149 LNYSIDAVRVIFKDT-------------FSYHLKF-------------SW-GQRIPKTKEHKDHT 186

  Fly   205 GP----RNEGDDDGGIPPGYLREGFLPLQHSLSMAYLR---QKSGEQDLPNV---VMKRYPFPA- 258
            .|    :|:...:..:   :..:||:..|.:::...:.   ..|..::|.:|   |||..||.| 
  Rat   187 APCEPFKNKMVCENSV---FWEKGFVAFQTAINAGIIEVTTNHSVMEELMSVIGSVMKMQPFIAQ 248

  Fly   259 -------YIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTA 316
                   :||          ..:|...||||   |::..:|.|:: .:..:|.:|||.....|.:
  Rat   249 GGVATDFFIF----------FCVISFSSFIY---YLSVNVTQERQ-SITTLMAMMGLRESAFWLS 299

  Fly   317 WFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFFSRAS 381
            |.:.....:.:.|.|::::||   |..|.|||  .|..:....::|.:|.|...|:|:....:  
  Rat   300 WGLMYAGFILVVATLMSLIVK---STQVVVLT--GFMVVFLLFLLYGLSLITLSFLMSVLLKK-- 357

  Fly   382 TAAAVTGLI-------------------------WFIAYI-PYSFTINSYDDLSLSSKLGWSLIS 420
              ..:|||.                         |.:.:: |::| ||....|   ..|.:.:.|
  Rat   358 --PFLTGLAVFLLTVFWGSLGFTALYKHLPAFMEWILCFLSPFAF-INGMAQL---IHLDYDVNS 416

  Fly   421 NTAMGFGIKLILGFEGTGEGLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPG 485
            |..:.                         |.:::..:.|.:.|:::..::|:.:.||.::::..
  Rat   417 NVNLN-------------------------SPNNSYLILATLFMLVLDALLYLALALYFDKILLS 456

  Fly   486 SFGVPRPWNFPFTREFWCGERE------YTGVEDIP--NGHVEQRDPKAFETEPEGKHIGLQMRH 542
            .:|..|...|.....:|...|.      ...::..|  |..:|...|     |.:||. .:::::
  Rat   457 KYGHQRSPLFFLKSSYWFQRRGADHVVLENEIDSAPSLNDSLEPVSP-----EFQGKE-AIRIKN 515

  Fly   543 LKKRF----GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGT-AIINGSDIR 602
            |:|.:    |....::||..:::|.:||.||||:||||||.|:.|:|:.|||:|: .|.|.:...
  Rat   516 LRKEYTGKHGKVEALRGLGFDIYEGQITALLGHSGAGKTTLINTLSGLSPPTTGSITIYNQTVSE 580

  Fly   603 TNIEGARMSL-GICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVAS 666
            |....|...| |:|||.|:.|..::|..::|.|:::||:..:.|||||.:.|:.:|:|:..:..:
  Rat   581 TEDSYAVPKLTGVCPQSNIQFGFLTVQENLRLFAKIKGILPQEVEQEVRQVLRDLEMENIQDTLA 645

  Fly   667 SKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEAD 731
            ..||||.||||:...|:.||.:|:|.|||::|:||.:|..:|:||::.:.||.::.:|.||||||
  Rat   646 QNLSGGQKRKLTFGIAILGDPQVLLLDEPTAGLDPLSRHHIWNLLKERRSGRVIVFSTQFMDEAD 710

  Fly   732 VLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGA 796
            :|.||...:.:|.|:|.|:|.||||::|.||.|.....:.|:...:|:|:.|:||..:.......
  Rat   711 ILADRKVFISNGRLRCAGSSLFLKKKWGIGYHLSLHLNETCDPESITSLVKKHIPDARLTAQSDE 775

  Fly   797 ELSYQLPDSASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVG----AEKDNTGNIKDQH 857
            :|.|.||...:.||.:::..|:..|:. .:..|.|.:|::.|||:|:.    ||:.:.|      
  Rat   776 QLVYILPLERTNKFPDLYRDLDRCSNH-GIEDYDVSMTTLNEVFLKLEGKSMAEEPDAG------ 833

  Fly   858 EIMNGGSGFRGEDDNESVQSDGIFSENRRLL---------QGLQLLSNQWKAMLLKKF--LYTWR 911
              :.|.....|..|.||:      .|..|:|         .|:.|...|..|:...:|  |...|
  Rat   834 --VCGRLLSDGAKDVESL------VELERVLPLDSSGSSVSGMALWRQQLCAVAKVRFLKLKNER 890

  Fly   912 NKLLLLIQNIMPVFFV--VVTILIIKT--QGTFQELKPITISLTQYPLAVTVLDRSNVQNGTGYE 972
            ..|:.::. :..:.||  ::..|:.|.  :.....|.|....|:...|....|....|.|.||..
  Rat   891 RSLMTMLL-LFGISFVPQLLEHLVYKVYHKSYSWGLSPSMYFLSPGQLPQDPLTHLLVINKTGSS 954

  Fly   973 IANKYEDLARSYGSNYGLELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKITAWLNNQAL 1037
            |.|....| |..|....::..||:..::..|         .|....|.....:.:.:...|.:.|
  Rat   955 IDNFIHSL-RQQGIALDVDALGTRNGKEEAL---------YNGAVTVLGDEKDLRFSVACNAKRL 1009

  Fly  1038 HTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCMCFVS 1102
            :..|:..:::.|.:.. :|.||.:||...:                    |....::.:...|:|
  Rat  1010 NCFPVLADILSNGLLG-IFNSSERIQTDRS--------------------TVFEDHMLYEYGFMS 1053

  Fly  1103 SIYILFLIKERESRAKLLQFV--GGV---------KVWT-------FWLSQFICDFASYIVTALI 1149
            :.:....:     .|.|..::  |.:         ::||       :|..|.:.|...|.:..|:
  Rat  1054 NAFFWIPV-----AASLTPYIAMGSISDHKKKVLSQLWTSGLYPSAYWCGQALVDIPIYFLILLL 1113

  Fly  1150 VVITIVCFQETGLSTFGELGRYYLLLLL---FGFA--VLPFIYIMSLFFREPATGFARVSIVNIF 1209
            :.|....|....:.:..|    .||:.:   .|:|  ::...|::|..||   .|.....|.:.|
  Rat  1114 MQIMDSVFSSEEIMSVIE----SLLIQIPCSIGYASSLIFLTYVISFVFR---NGRKNSGIWSFF 1171

  Fly  1210 CGMALFIVVVVMSSELFDTKDTADILGWIFRIF-----PHFSLAMSLNKVYTNTATRNACAKAGA 1269
                 |::|.:......|..:    .|::..:|     |.|:|..|| .:::..:..:......:
  Rat  1172 -----FLIVTIFFIVATDINE----YGFLQLLFCTLLIPPFTLIGSL-LIFSEVSYDSVDYLGSS 1226

  Fly  1270 LPPILLCELVPQCCNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLIS 1334
            ...::...|      |.||..:                ::||.|:..|| |.|.:...::..:..
  Rat  1227 ESQLVFLAL------LIPYLHF----------------LLFFFILRCLE-RYIRKKTLRVDPVFR 1268

  Fly  1335 -KP------PPPPTEGQLDDDVANERERIL-QMSSNELATKNLVL-DRVTKYY-----------G 1379
             .|      |.|...|:.|:||..||.|.. .|::.::..|.::: ..:.|.|           .
  Rat  1269 ISPRSCRAFPNPEDPGEEDEDVQMERVRTSGAMTTPQMDEKPVIIASCLRKEYTVKTKRCFSKTK 1333

  Fly  1380 QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIG 1444
            :.:|...:|.||::.|..||||.|||||:||..|:|||...::|..:::|    |:.::....:|
  Rat  1334 KKIATRNISFCVKKGEVLGLLGHNGAGKSTTISMITGDTVPTAGQVFLKG----SSGSAALGFLG 1394

  Fly  1445 YCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLS 1509
            ||||.:.|..:||.:|.|.::..::|:::.........|..:......:.......|.|.||||.
  Rat  1395 YCPQENVLWPNLTVKEHLEVYAAVKGLRKKEAIVTITRLVNALKLQDQLKALVKTLSEGVKRKLC 1459

  Fly  1510 TAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMV-CRIRDSGKSIVLTSHSMEECEALCTRLAIMV 1573
            ..::::|:|||:.||||:|||||..::|:|..: ....::.:..:||:|.|.|.||:|.|:||||
  Rat  1460 FVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFTNTERGALLTTHYMAEAEAVCDRVAIMV 1524

  Fly  1574 NGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQRDIDAVK 1638
            :|..:||||.||||:||.|..:|::|::                       .||.:...:.:.::
  Rat  1525 SGRLRCIGSIQHLKSKFGKDYLLEMKLK-----------------------TPALVESLNTEILR 1566

  Fly  1639 EFVETEYPNSILQEEYQGILTFYIPLTGVK-WSRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEF 1702
            .|     |.:..||.|..::.:.:|:..|: .|..|..:|..::..::|:||:||:|||::|||.
  Rat  1567 LF-----PQAARQERYSSLMVYKLPVEDVRPLSEAFFKLERLKENFDLEEYSLSQSTLEQVFLEL 1626

  Fly  1703 AKYQ 1706
            :|.|
  Rat  1627 SKEQ 1630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 46/213 (22%)
ABC2_membrane_3 <269..475 CDD:289468 45/231 (19%)
CcmA 538..843 CDD:224054 117/310 (38%)
ABC_subfamily_A 538..755 CDD:213230 90/222 (41%)
ABC2_membrane_3 913..1316 CDD:289468 77/434 (18%)
ABC_subfamily_A 1369..1587 CDD:213230 78/230 (34%)
drrA 1376..1702 CDD:130256 107/338 (32%)
Abca9XP_038943368.1 rim_protein <207..1630 CDD:130324 411/1604 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342297
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.750

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