DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and abt-5

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_001364572.1 Gene:abt-5 / 173081 WormBaseID:WBGene00000023 Length:1582 Species:Caenorhabditis elegans


Alignment Length:1592 Identity:436/1592 - (27%)
Similarity:731/1592 - (45%) Gaps:283/1592 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 LPNVVMKRYPFPAYIF--DPLLEGM-------SSIM----------------------SLIILLS 279
            ||.:..:.|.|.:|.:  :.::.|:       |||:                      .|:..:.
 Worm   142 LPAIGRRSYNFRSYNYYMNKIMFGLSQRANNTSSIIENFDIKLYSITNFEESGFGQNFGLLFAVC 206

  Fly   280 FIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSE-D 343
            .:.|...:.:.:..|| ..:|..:..:||..|:.:...|:...|..|....|::.|...:... .
 Worm   207 MLMPVISVARALVVEK-SSVKPYLTTIGLPLWMFYLEHFLFGVIKNTFLITLLSTLYIFSMDNCP 270

  Fly   344 VAVLTHANFTALVFFLIIYIVSSICFCFMMATFFSRASTAAAVTG--LIWFIAYIPYSFTINSYD 406
            ..||      |.:|....:.||....|..:..|..|     .|.|  :||....|..        
 Worm   271 TYVL------AGIFMYTCHCVSFSILCTSILPFGKR-----IVEGMVIIWITLIIAM-------- 316

  Fly   407 DLSLSSKLGWSL-ISNTAMGFGIKLILG--FEGTG-EGLQWSNFFTPVSVDDTLTLGAVMIMMLV 467
            .|||..:..|.. :......:.:||.:.  |..:| .|...|..|:  |...||...||...:::
 Worm   317 HLSLEFEFDWLFWVPLLNPNYSLKLFVDATFLASGPNGTPTSALFS--SKKKTLQSAAVYFGIMI 379

  Fly   468 SCVIYMII-CLYVEQVMPGSFGVPRPWNFPFT-----REFW------CGEREYTGVEDIPNGHVE 520
            ||.:.|:: .:::|::            :.|.     :.||      .|:|  :.:|:..:| ||
 Worm   380 SCTVVMLVAAIFMEKL------------YTFVGHAIFKRFWRILGFSKGKR--SKIEERGDG-VE 429

  Fly   521 QRDP--KAFET-EPEGKHIG-LQMRHLKKRFGN-KMVVKGLSMNMFEDEITVLLGHNGAGKTTTI 580
            .|..  :..|| |..|..|. :::..|.|.:.| :..|.|||:.....::::||||||.||:||.
 Worm   430 DRSTILQCKETVEGRGSAIADIELSGLVKVYQNGEKAVNGLSLRAIRGQVSILLGHNGCGKSTTF 494

  Fly   581 SMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKA- 644
            .|:|||...|.|..:|.|.|...|...||..:|.|||:|.::||::|..|:|..:.:||..|.: 
 Worm   495 GMITGMHQATEGKVMIGGIDANANRAEARELIGYCPQYNPIYDELTVWEHLRLVNALKGRSGGSD 559

  Fly   645 VEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD 709
            .:.:....||.|||.||.|..:..|||||||||.||.|:.|.::|:|.|||::|||||||..:.:
 Worm   560 FKMDAESLLKQIELTDKRNTLAKNLSGGMKRKLCVCMAMIGGSRVILLDEPTAGMDPSARIDVQN 624

  Fly   710 LLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKR----- 769
            :|...|..||:|||||:||||:.|||.|.:|..|::...|:..:||::||.|..|..|.:     
 Worm   625 MLALVKADRTILLTTHYMDEAEKLGDWIFVMSHGKMAASGSKHYLKQKYGGGMLLTLVFKSVHDP 689

  Fly   770 -----------DDCETNEVTALLNKYIPGLKPECDIGAELSYQLP------------DSASAKFE 811
                       |.|:|...|||: |...|...|..|......:||            |..:.:|:
 Worm   690 MRPRKSYETAYDVCKTVCSTALV-KDERGQMIEISILETEKSRLPTLLKILESVMEEDYNNPEFQ 753

  Fly   812 EMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDNTGNIKDQHEIMNGGSGFRGEDDNESVQ 876
            .:...::|:...|.|...||.::|:|:||:|:|.|.|         :||| |:|...:.:.:...
 Worm   754 ALEPDIQEKCRTLELATIGVSMSSLEQVFIKIGDECD---------DIMN-GTGVDKKTERQEKF 808

  Fly   877 SDGIFSENRRLLQGL-QLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTF 940
            |..:..:.::..||. :|:...| |:|.|:..|.:||.:.:.:|.|:|    ::|:.:.......
 Worm   809 STLVQYKIQQPKQGFSKLMMVVW-ALLQKRAYYLYRNPVQITLQIILP----LLTLWLFAVPFLR 868

  Fly   941 QELKPITIS------LTQYPLAVTVLDRSNVQNGTGYEIAN------KYEDLARSYGSNYGL--- 990
            .|.||..:|      .:|||.:..:|   .::|.....:||      .:|.:...|..:||.   
 Worm   869 LEPKPPKLSDIESFDPSQYPHSTVLL---QLENENDDRLANYLNSFSNFEVVKVGYNDHYGYLVK 930

  Fly   991 ---ELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKITAWLNNQALHTAPLTVNMVHNAIA 1052
               ::..|.||           .|::|.:       .:||.  :..:|....|.:.:|::.:|: 
 Worm   931 KYSQVFKTLGF-----------IVKVNKK-------GDSKF--YKISQGDKNAAILMNIIASAM- 974

  Fly  1053 DKLFGSSVKIQVTNAPLPYTTSTLL----SQLSTGNNLGTQLASNLCFCMCFVSSIYI---LFLI 1110
             .|...||      ..||:.||.::    .::.........|..|: |.:..::.|:|   ::||
 Worm   975 -YLRDPSV------TKLPHVTSRVIWMNDPKIKYEGLASFFLFENI-FFLLVLAGIFIQSTVYLI 1031

  Fly  1111 KERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGEL-GRYYLL 1174
            :|:..:....|::.|:....:|...|:.||..:....|..:..::        :||.| |..:.:
 Worm  1032 EEKICKFAHQQYLTGLSTIAYWGVVFLWDFLLFTFFLLYTIGFLI--------SFGVLQGHIHEI 1088

  Fly  1175 L-----LLFGFAVLPFIYIMSLFFREPATG-FARVSIVNIFCGMALFIVVVVMSSELFD---TKD 1230
            :     |||.||  |.:|:.|.....|..| |    ::.:||.:......:|  |||.:   .:.
 Worm  1089 VVIFYGLLFYFA--PLVYLTSALINTPTRGNF----LLYMFCCIPWLAYSIV--SELHNFPPIQK 1145

  Fly  1231 TADILGWIFRIF-PHFSLAMSLNKVYTNTATRNACAKAGALPPILLCELVPQCCNLKPYFAWEEP 1294
            .:|.:.:.|||| |.......|.|:    |..| ..|:|      |.:......||     |...
 Worm  1146 YSDEIEYGFRIFNPSIGFLAGLMKI----AALN-YPKSG------LDKHFEHLTNL-----WTYE 1194

  Fly  1295 GVLPETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEGQLDD--DVANERERIL 1357
            |:..|.:::...|:...:::.....:......|:..:..|:|........::.  .|..|.:.:.
 Worm  1195 GIFFELMFLFFGGIFLTILLGCATLKPFRRACFRGTRRRSQPRERKRYKGIESCKAVKEEEQLVQ 1259

  Fly  1358 QMSSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISS 1422
            ::..||..   ||:|.:.|.:|:|.|||.:|:.|...||||:||.|||||||||.::||....:.
 Worm  1260 EVDKNETV---LVIDGLVKDFGKFRAVNDLSISVGHEECFGMLGANGAGKTTTFDIITGLTMPTG 1321

  Fly  1423 GAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSF 1487
            |:|.:.|..:...::     |||||||||:|..::.|:.|||...|:|.  ..::::.|.:....
 Worm  1322 GSATIDGHDITETIH-----IGYCPQFDAMLQQISCRQTLRIMAKLQGY--PNVKEVVELVLDCV 1379

  Fly  1488 GFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGK-S 1551
            |......|.....|||.|||:|..||::...:.|.|||||.|:||.|||::|:::..:|:..| |
 Worm  1380 GMSDFGYKLVKNCSGGQKRKISVGIALMSRATCIILDEPTAGIDPRARREIWDIIHEMREQAKCS 1444

  Fly  1552 IVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGY 1616
            |||||||||||||||||:.|:..||...:|::|.||:::....::.: :..:||           
 Worm  1445 IVLTSHSMEECEALCTRIGILRKGEMIALGTSQSLKSQYGNTYMMTL-ILNSLE----------- 1497

  Fly  1617 ARNPDEQTVPAQMSQRDIDAVKEFVETEYPNSILQEEYQGILT---FYIPLT-GVKWSRIFGLME 1677
                            |:::|...|..|.|:::|:.....:.|   :.:|.: ..|||..:..:|
 Worm  1498 ----------------DLESVCVIVSEEMPDAVLKTPESSLTTSIVWELPKSKSDKWSEKYNQVE 1546

  Fly  1678 SNRDQLNVEDYSVSQTTLEEIFLEFAKYQRED 1709
            ....:.|.:||.::|.:||:.|:.....:.|:
 Worm  1547 VLAKKANAKDYMLTQASLEDTFIRLITTEEEE 1578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 40/216 (19%)
ABC2_membrane_3 <269..475 CDD:289468 49/234 (21%)
CcmA 538..843 CDD:224054 125/334 (37%)
ABC_subfamily_A 538..755 CDD:213230 95/218 (44%)
ABC2_membrane_3 913..1316 CDD:289468 92/438 (21%)
ABC_subfamily_A 1369..1587 CDD:213230 97/218 (44%)
drrA 1376..1702 CDD:130256 117/330 (35%)
abt-5NP_001364572.1 rim_protein <419..1569 CDD:130324 373/1268 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.830

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