DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abca3 and ldd

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_061515576.1 Gene:ldd / 1275311 VectorBaseID:AGAMI1_012267 Length:2030 Species:Anopheles gambiae


Alignment Length:1571 Identity:391/1571 - (24%)
Similarity:684/1571 - (43%) Gaps:280/1571 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 KRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAE---KEKQLKEVMKIMGLSNWLH 313
            |::|:|.|..|...:|: .:...|.:..||....::...:..:   ||.....:|:.|||.:...
Mosquito   618 KQFPYPKYTKDDFKKGL-YLAQAIQMAYFIALIVHVASSVRQKIWMKESGNSMLMRSMGLKSGSE 681

  Fly   314 WTAWFVKSFIMLTISAIL-IAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFF 377
            ..:|.:.:||.::|..:: :|||.      ...:|.|:|...|..:|:::.|..|.||:|.:.||
Mosquito   682 TVSWVITTFIEISIVFLIGLAILY------GGGLLVHSNQLFLFCYLVLFGVCLIGFCYMCSMFF 740

  Fly   378 SRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEGLQ 442
            :.||..:..|.:::.|.::||...|.....||.::|...:|..:||..:..:.::..|....|..
Mosquito   741 NSASIGSVSTVILFLITFLPYIIIIALGATLSSAAKFVANLSFSTAFCYAWRHVIRMELQHRGAN 805

  Fly   443 WSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFWCGERE 507
            :|:.|.....::.|..|  ::|:|:..|||..|                                
Mosquito   806 FSSAFRGAIAENDLKFG--ILMVLLDAVIYFTI-------------------------------- 836

  Fly   508 YTGVEDIPNGHVEQ---RDPKAFETEPE---GKHIGLQMRHLKKRF--GNKMVVKGLSMNMFEDE 564
                     |::.|   :|...|.|...   .|.||.::|::...:  |.|.|:..:|:....||
Mosquito   837 ---------GYLYQCFKKDETTFHTVKRIKLDKSIGAELRNVDVAYEKGGKKVLSDVSITFRRDE 892

  Fly   565 ITVLLGHNGAGKTTTISMLTGMFPPTSGTA-------IINGSDIRTNIEGARMSLGICPQHNVLF 622
            :|.|||.|||||:|.|.:|||...|..|..       .|:|  ||.|.|    .:|:|||::||.
Mosquito   893 VTCLLGRNGAGKSTIIKLLTGQVRPIEGDVHLPLDYDFISG--IRNNAE----KIGLCPQNDVLI 951

  Fly   623 DEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 687
            ..::...|::.::|:|..||  .:.||::.|:.:::....:..:|.||||.||:|.:..|..|..
Mosquito   952 PNLTAKEHLQLYARIKLTRG--FDTEVSRTLENLKMGPYQHYRASDLSGGFKRRLCIAIAFLGSP 1014

  Fly   688 KVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSF 752
            .:|:.|||.|.:|..||:.:|:|:|..:..|.::|.||.:|||:.|.|:|.::.:|:...:.:..
Mosquito  1015 NLVILDEPCSSVDTKARKYIWELIQTLRKDRAVILATHHLDEAECLSDKIVMLENGKAILEQSQE 1079

  Fly   753 FLKKQY-GSGYRLICVK-RDDCETNEVTALLNKYIPG-LKPECDIGA---ELSYQLP----DSAS 807
            .|||:: .:.|..|.:| :.|.:...:.|.|:|.:.| :....|:.|   :|.:::.    ||..
Mosquito  1080 ELKKRFTNTIYLSIFLKHQTDVDRTVMIAQLSKLLDGTVDLRYDMSATLNQLDFKITSSTNDSQV 1144

  Fly   808 AKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDNT--------GNIKDQHEIMNGGS 864
            ...|.:...:.:...:..::.:.:...::..:|..|.| .|.|        ||......|.|   
Mosquito  1145 LNIEPLLEHMAQLKSQKQIDSFEIRNENLLNIFSTVNA-SDPTPADPMLQNGNGTSATHIPN--- 1205

  Fly   865 GFRGEDDNESVQSDGIFSENRRLLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVV 929
            ||.|...|:|               .|..:|..| .:..|:..:..||..||:...::|..|.::
Mosquito  1206 GFHGPKTNDS---------------KLSTMSIMW-TLFCKRMRHFMRNYRLLVCLLVLPTIFEII 1254

  Fly   930 TILIIKTQGTFQELKP-------ITISLTQYPLAVTVLDRSNVQNGTGYE-------IANKYEDL 980
            .:       .|..::|       :..|...||.:....  :|..:|..|.       :|:..::.
Mosquito  1255 AM-------GFMTIRPPGEHDLMVNFSTALYPRSAEFY--TNATDGDEYRDAIVSDVLAHCTDEY 1310

  Fly   981 ARSYGSNYGLELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKITAWLNNQALHTAPLTVN 1045
            ...:.|:|..........:||            ..|.....||.:.|...|.||:..|:.|..:|
Mosquito  1311 CSIFNSSYEAYRWVLSTTDDY------------TERRYGGITINKEKNIVWYNNKGYHSMPTWLN 1363

  Fly  1046 MVHNAI-ADKLFGSSVKIQVTNAPL-----PYTTSTLLSQLSTGNNLGTQLASNLCFCMCFV-SS 1103
            |:..|: ..:|..||..|:..|.||     ..:.|::|.|::   :.|..|...|.|.:... :|
Mosquito  1364 MLDTAVLRAELNDSSYTIRTINHPLKIEEDELSVSSMLQQIA---DAGISLIILLAFSLVVAGAS 1425

  Fly  1104 IYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGEL 1168
            :||   :.||....||.|.:.||.|:|:|...:|.|...:::...:.||....|.........:|
Mosquito  1426 VYI---VNERIRGEKLQQRLAGVNVFTYWSVTYIWDAMIFLIALALAVIVFKVFAIPAYVAREQL 1487

  Fly  1169 GRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSI--VNIFCGMALFIVVVVMSSELFDTKDT 1231
            ....|||:.:|||.:|.:::....|.:  ..||.:||  :|:...:.. :.::::...|.||.::
Mosquito  1488 EGICLLLVFYGFATIPAVHLFEKLFTD--ASFANMSIFCLNVITALGT-LTIIILFDILGDTDES 1549

  Fly  1232 ADI---LGWIFRIFPHFSLAMSLNKVYTNTATRNACAKAGALPPILLCELVPQCCNLKPYF--AW 1291
            ..|   |...|.:.|..:|:..|.::..|..|...                     .|.|:  ::
Mosquito  1550 ERIRNALNRAFLVLPQHALSDGLIELSKNYITAEI---------------------FKRYYIDSY 1593

  Fly  1292 EEPG----VLPETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEGQLDDDVANE 1352
            :.|.    :.|..:.:||.|.:|.|:.|.:|::::..:..:|.. .|:|......|....|.:..
Mosquito  1594 KSPVYSTLLHPHLIALAVMGFIFMLLNIAIEYKVVQRIYNRIVG-TSQPKVHDINGMDTPDYSTV 1657

  Fly  1353 RERILQMSSNELATKNLVLDRVTKYY----------GQFMAVNQVSLCVQEVECFGLLGVNGAGK 1407
            ..|:.....:..|.:.|.:|.:.|.|          .....|..||..::..|||||||.|||||
Mosquito  1658 ISRVEGKKKSITADQILSVDNLRKRYRGCGGGGGGAKGLEVVKDVSFKLRYGECFGLLGTNGAGK 1722

  Fly  1408 TTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIG--YCPQFDALLDDLTGREVLRIFCMLRG 1470
            :|.|.:::| |.:.||.::           :.|...|  ||||.:.|...||..||:..:..||.
Mosquito  1723 STIFAILSG-ELLPSGGSF-----------TFYSTHGPSYCPQNNFLDPLLTVEEVIVFYGKLRN 1775

  Fly  1471 VQESRIRQLSEDLAKSFGFMKHIDKQTHAY--------SGGNKRKLSTAIAVIGSPSVIYLDEPT 1527
            ::.  |.:|..:..|.:    |::    ||        ||||:|||..|::..|...:|.:||||
Mosquito  1776 IES--IDKLIMETLKEY----HLE----AYRKVLVKNLSGGNRRKLCVAVSCFGQSEIILMDEPT 1830

  Fly  1528 TGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKF-- 1590
            :.:||..|..:::.:.|:....:||:|||||:.|.:.:|.|:||:.:||...:.:...||.:|  
Mosquito  1831 SDLDPVTRSIVYSTIERLNAQNRSILLTSHSISEIDRICQRIAILKDGELLTVDTPDRLKERFGH 1895

  Fly  1591 SKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQRDIDAVK---EFVETEYPNSILQE 1652
            |..:.|.::..|.::.||..:......              |||...|   :||...||....|.
Mosquito  1896 SYQITLYLEGLREVDFLRVIKREFNVT--------------RDIILHKNSVQFVCQIYPEGGSQR 1946

  Fly  1653 E------YQGILTFYIPLTGV-------------KWSRIFGLMESNRDQLNVEDYSVSQTTLEEI 1698
            |      ..|.:|..:..||.             ..|.:| |......|.|...|::|:..::::
Mosquito  1947 EENGKPHKNGHVTIMLDDTGSLVVAPGTSTSATGTASELF-LKLQRFAQANKLRYTISRCQMDQV 2010

  Fly  1699 FLEFAKYQRED 1709
            |....:...||
Mosquito  2011 FENVLQNHEED 2021

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 389/1568 (25%)
lddXP_061515576.1 None

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