Sequence 1: | NP_608445.2 | Gene: | ABCA / 33103 | FlyBaseID: | FBgn0031170 | Length: | 1714 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006537617.1 | Gene: | Abca1 / 11303 | MGIID: | 99607 | Length: | 2263 | Species: | Mus musculus |
Alignment Length: | 1939 | Identity: | 636/1939 - (32%) |
---|---|---|---|
Similarity: | 981/1939 - (50%) | Gaps: | 372/1939 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 24 HKWQMVIELVLPAIFSLL-----LVLVRTLVDTEQKGVRYYNEQNLTDLNLLQHSLHRSSYLGKL 83
Fly 84 IALIAPNR---RRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKICESENATQLE----- 140
Fly 141 -------LDTVSKNAF-AGVQFDDAWANLTENDPLPNDFHFALRFPAELRTATIAIANTWLTMRL 197
Fly 198 FPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGEQDLPNVVMKRYPFPAYIFD 262
Fly 263 PLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTI 327
Fly 328 SAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFFSRASTAAAVTGLIWF 392
Fly 393 IAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSVDDTLT 457
Fly 458 LGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFWCGER---------EYTGVED 513
Fly 514 IPNGHVEQRDPKAFETEPEGKHIGLQMRHLKK--RFGNKMVVKGLSMNMFEDEITVLLGHNGAGK 576
Fly 577 TTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLR 641
Fly 642 GKAVEQEVAKYLKMIEL-EDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARR 705
Fly 706 QLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRD 770
Fly 771 ------DCETNEVT-ALLNKYIPGLKPEC------------------------------------ 792
Fly 793 --DIGAELSYQLPDSASAK--FEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAE------- 846
Fly 847 -------KDNTGNIKDQHEIMNGGSGFRGED---------DNESVQSD---GIFSENRRLLQGLQ 892
Fly 893 LLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTI---LIIKTQGTFQ--ELKP------- 945
Fly 946 ---------------ITISLTQYP-----------------LA--------------VTVLDRSN 964
Fly 965 -------------------------------------------VQNGTG-----YEIANKYEDLA 981
Fly 982 RS-----------YGSNYGLELTGTQGF------EDYILDLGKTIQVRINS---RYL------VA 1020
Fly 1021 ATITESKITAWLNNQALHTAPLTVNMVHNAI--ADKLFG---SSVKIQVTNAPLPYTTSTLLSQL 1080
Fly 1081 STGNNLGTQLASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIV 1145
Fly 1146 TALIVVITIVCFQETGLSTFGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFC 1210
Fly 1211 G----MALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSLAMSLNKVYTNTATRNACAKAGA-- 1269
Fly 1270 -LPPILLCELVPQCCNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLI 1333
Fly 1334 SKPPPPPTEGQLDDDVANERERILQ-MSSNELATKNLVLDRVTKYYGQFM--AVNQVSLCVQEVE 1395
Fly 1396 CFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGRE 1460
Fly 1461 VLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1525
Fly 1526 PTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKF 1590
Fly 1591 SKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQRDIDAVKEFVETEYPNSILQEEYQ 1655
Fly 1656 GILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQRED 1709 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
ABCA | NP_608445.2 | ABC2_membrane_4 | 254..434 | CDD:289500 | 68/179 (38%) |
ABC2_membrane_3 | <269..475 | CDD:289468 | 76/205 (37%) | ||
CcmA | 538..843 | CDD:224054 | 153/354 (43%) | ||
ABC_subfamily_A | 538..755 | CDD:213230 | 116/219 (53%) | ||
ABC2_membrane_3 | 913..1316 | CDD:289468 | 133/546 (24%) | ||
ABC_subfamily_A | 1369..1587 | CDD:213230 | 119/219 (54%) | ||
drrA | 1376..1702 | CDD:130256 | 151/327 (46%) | ||
Abca1 | XP_006537617.1 | rim_protein | 6..2238 | CDD:130324 | 636/1939 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 159 | 1.000 | Domainoid score | I4067 |
eggNOG | 1 | 0.900 | - | - | E2759_KOG0059 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG53524 | |
OrthoDB | 1 | 1.010 | - | - | D131191at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000051 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100045 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.730 |