DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abca3 and abca2

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_031746716.1 Gene:abca2 / 100498548 XenbaseID:XB-GENE-969968 Length:2496 Species:Xenopus tropicalis


Alignment Length:2045 Identity:609/2045 - (29%)
Similarity:933/2045 - (45%) Gaps:527/2045 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 LGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEA----------------WQSLGK- 127
            ||.|:.|:..|.:            :.||||...:.|::.:|                |.::.. 
 Frog   496 LGLLVHLMTSNPK------------ILYSPVGTEVDKVIRKANETFAFVGNVTRYAWMWLNISAE 548

  Fly   128 ---------------------------------------NKICESE----NATQL--ELDT---- 143
                                                   .|:..|.    ||:.|  :|||    
 Frog   549 IRGLLEEGILQRRIEWLQQFTNDLQKHPELLNGSDSELLRKVLSSNFTMPNASSLLQQLDTIDNA 613

  Fly   144 ----------VSKNAFAGVQFDDAWANLTEND--------------------PLPNDFHFALRFP 178
                      ||.:.|.|...:|:..|.|.|.                    .||....:.:|..
 Frog   614 ACGWTRFMSKVSVDIFKGFPNEDSIVNYTLNQAYHDNVTVFASVIFQTQKDGSLPPHVMYKIRQN 678

  Fly   179 AELRTATIAIANT-WLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSG 242
            :.....|..|... |               ..|.:.||  ..|...||:.:|..:..|.:....|
 Frog   679 SSFTEKTNEIRRAYW---------------RPGPNTGG--RFYFLYGFVWIQDMMDRAIISTIVG 726

  Fly   243 EQDL-PNVVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIM 306
            ...: |...::.:|:|.|..|..|..:..:|.|.:::|::|....:.::|.||||.:||||||:|
 Frog   727 HDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSVAMMIQHIVAEKEHRLKEVMKMM 791

  Fly   307 GLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCF 371
            ||:|.:||.|||:..|:.|:||...:..::|..     .||.|:|...:..||.||.|::|.|||
 Frog   792 GLNNAVHWVAWFITGFVQLSISVTALTGILKYG-----QVLMHSNVFIIWLFLSIYAVATIMFCF 851

  Fly   372 MMATFFSRASTAAAVTGLIWFIAYIPYSFTI----NSYDDLSLSSKLGWSLISNTAMGFGIKLIL 432
            :::..:|:|..|:|..|:|:|::|:||.:..    .::|.::...|...||:|.||.|.|.|...
 Frog   852 LVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFGLGSKYFA 916

  Fly   433 GFEGTGEGLQWSNFF-TPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFP 496
            .:|..|.|:||..|. :||..|| ..|...|:|:::..::|.|:..|:|.|.||.:|:||||.||
 Frog   917 LYEVAGVGIQWRTFSQSPVEGDD-FNLMLSMMMLIIDTMVYGILTWYIEAVHPGMYGLPRPWYFP 980

  Fly   497 FTREFWCGEREYTGVEDIPNGHVE--------QRDPK----------AFET---------EPEGK 534
            |.|.:|.|           :|.:|        .|.|:          |.|:         |.|..
 Frog   981 FQRSYWLG-----------SGRIETWEWSWPWSRPPRLSIMEEDQACAMESRRLDETRGIEEEPS 1034

  Fly   535 HIGLQ--MRHLKK--RFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAI 595
            |:.|.  :..|.|  :.|.|:.:..||:|:.|:::...|||||||||||:|:|||:||||||:|.
 Frog  1035 HLPLVVCIDKLTKIYKTGKKLALNKLSLNLHENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 1099

  Fly   596 INGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELED 660
            |.|.||||.:...|.|:|:|||||||||:::|..|:.|:||:||:..:.:.:|:.|.::.:||.:
 Frog  1100 IYGHDIRTEMNEIRKSMGMCPQHNVLFDKLTVEEHLWFYSRLKGMAEEEIRKEMDKMIEDLELSN 1164

  Fly   661 KANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH 725
            |.:.....|||||||||||..|..|.:|.|:.|||::|:||.|||.:|||:.:.|.|||:||:||
 Frog  1165 KRHSLVQTLSGGMKRKLSVAIAFVGGSKAVILDEPTAGVDPYARRAIWDLILKYKQGRTILLSTH 1229

  Fly   726 FMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDD--------------CETNE 776
            .|||||:|||||||:..|:|||.|:..|||..||.||:|..||...              |....
 Frog  1230 HMDEADLLGDRIAIISHGKLKCYGSPLFLKSTYGDGYKLTVVKNQSGPDTGHTGPSCISPCSEPR 1294

  Fly   777 VTALLNKYIPGLKPECDIGAELSYQLPDSASAK--FEEMFGQLEEQSDELHLNGYGVGITSMEEV 839
            |:..:.||:.......|...||||.||..:..|  ||.:|..||:...:|.|..:|:..|::|||
 Frog  1295 VSQFIKKYVASCLLVSDTNTELSYILPSESVRKGCFERLFQHLEQNLSDLELTSFGLMDTTLEEV 1359

  Fly   840 FMKVGAE----KDNTGNIKDQHEIM-------NGGSG---------------------------- 865
            |:||..|    :::..:||:..:..       :||:|                            
 Frog  1360 FLKVSEEDQSLENSDADIKESKKDTLRPLIQPDGGTGSPLTDALEKPEVELNNFASEAKTSQSPS 1424

  Fly   866 ------------FRGEDDNESVQSDGIFS---------ENRRL-----------------LQGLQ 892
                        .||::.....:..|.:|         ||..|                 |:|..
 Frog  1425 SLRSGSSSSVGSVRGDEGGAYAEFYGDYSPLFDNLQDAENLSLHEPETEEQVLDGQGSYKLEGSW 1489

  Fly   893 LLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQELKPITISLTQY---- 953
            |...|:..:::|:|....||...|..|.::|.|||.|.:.:..:.....:|.|:.:|.:||    
 Frog  1490 LKLRQFHGLIVKRFHCAKRNTKALFSQILLPAFFVCVAMTVALSVPEIGDLPPLILSPSQYHNYT 1554

  Fly   954 ------------------------------------PLAV-----------TVLDR----SNVQN 967
                                                |..:           :.||:    .|:.:
 Frog  1555 QPKGNFVPYANEEQPEYRIKLSPDAGPQQLVNTFHLPSGIGATCVLKTAFNSTLDQLVQSLNMNS 1619

  Fly   968 GTGYEIANKY---------------------------------EDLARSY--------------- 984
            .....:|.:|                                 |||:|.:               
 Frog  1620 SESKMLAAQYFDAMCVDSFTQGLPLSNFVPPPPSPAPSDYPPDEDLSRLWNATTFPPEPVQAEAV 1684

  Fly   985 ---------------------GSNYGLELTGTQGFEDYILDLGKTIQVRINSR----YL------ 1018
                                 |:.:... :|..|....:..:...|.|.|:.|    ||      
 Frog  1685 TSTPSLPRRIHEPIRCTCSMQGTGFSCP-SGVGGHPHQMKVVTGDIMVAISGRNVSEYLLYTSDR 1748

  Fly  1019 -------------VAATITES----------KIT------AWLNNQALHTAPLTVNMVHNAI--- 1051
                         |...|..|          ||.      |:.||:..|:.|..:|.::||:   
 Frog  1749 FRLHRYGALTFGNVQKAIPASFGAKAPPMLRKIAVRHTAQAYYNNKGYHSMPTYLNALNNALLRA 1813

  Fly  1052 ---ADKLFGSSVKIQVTNAPLPYTTSTL-LSQLSTGNNLGTQLASNLCFCMCFVSSIYILFLIKE 1112
               ..|...::..|.|||.|:..|:::| |..|..|.::  .:|..:...|.||.:.:::||:.|
 Frog  1814 NLPKGKGNPAAYGITVTNHPMNKTSASLSLDYLLQGTDV--VIAIFIIVAMSFVPASFVVFLVAE 1876

  Fly  1113 RESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLL 1177
            :.::||.||||.|.....:||:.::.|..:|:|.|...:|.:..|.....::.........|.||
 Frog  1877 KSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPAYTSPTNFPAVLSLFLL 1941

  Fly  1178 FGFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELF----DTKDTADILGWI 1238
            :|:::.|.:|..|.:|..|:|.:..:.::|:|.|:...:...::  :||    |.|.....|...
 Frog  1942 YGWSITPIMYPASFWFEVPSTAYVFLIVINLFIGITATVATFLL--QLFEHDKDLKLVNSYLKSC 2004

  Fly  1239 FRIFPHFSLAMSLNKVYTNTATRNACAKAGALPPILLCELVPQCCNLKPYFAWEEPGVLPETVYM 1303
            |.|||:::|...|.::..|.......||.|            |...:|..|.|:.  |....|.|
 Frog  2005 FLIFPNYNLGHGLMEMAYNEYINEYYAKIG------------QFDKMKSPFEWDI--VTRGLVAM 2055

  Fly  1304 AVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEGQ-LDD---DVANERERILQ-MSSNE 1363
            .:.|.|.|.|.|:.::....           ||...|...: ::|   ||||||:|:|: .:.|:
 Frog  2056 TIEGFVGFFITIMCQYHFFR-----------KPQRLPISNKPIEDDDVDVANERQRVLRGGADND 2109

  Fly  1364 LATKNLVLDRVTKYY-----GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSG 1423
            :    |.::.:||.|     |:.:||:::.:.|:..|||||||||||||||||||:||||..:.|
 Frog  2110 M----LKIENLTKVYKSRKMGRILAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDESTTGG 2170

  Fly  1424 AAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGV----QESRIRQLSEDLA 1484
            .|::.|.|:...:..:.:.||||||||||.|:||.:|.|.::..|||:    :|..::...|.|.
 Frog  2171 EAFINGHSILKELLQVQQTIGYCPQFDALFDELTAQEHLELYTRLRGIPWKDEERVVKWALEKLE 2235

  Fly  1485 KSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSG 1549
                ..|:.||....||||||||||||||:||.||.|:||||||||||.|||.|||::..|..:|
 Frog  2236 ----LAKYADKPAGTYSGGNKRKLSTAIALIGYPSFIFLDEPTTGMDPKARRFLWNLILDIIKTG 2296

  Fly  1550 KSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSG 1614
            :|:|||||||||||||||||||||||..||:||.|||||:|..|.::.::.:.::          
 Frog  2297 RSLVLTSHSMEECEALCTRLAIMVNGRLKCLGSIQHLKNRFGDGYMITVRTKSSI---------- 2351

  Fly  1615 GYARNPDEQTVPAQMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESN 1679
                              ::..|..|....:|.::|:|.:...:.:.:....|..:::|..||..
 Frog  2352 ------------------NVKEVVRFFNRNFPEAVLKERHHTKVQYQLKSEQVSLAQVFSKMEQV 2398

  Fly  1680 RDQLNVEDYSVSQTTLEEIFLEFAKYQRED 1709
            .|.|.:||||||||||:.:|:.|||.|.::
 Frog  2399 LDVLGIEDYSVSQTTLDNVFVNFAKKQSDN 2428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 593/1925 (31%)
abca2XP_031746716.1 rim_protein 1..2430 CDD:130324 609/2045 (30%)

Return to query results.
Submit another query.