DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abca3 and abca9

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_031750505.1 Gene:abca9 / 100496782 XenbaseID:XB-GENE-6464273 Length:1608 Species:Xenopus tropicalis


Alignment Length:1838 Identity:458/1838 - (24%)
Similarity:829/1838 - (45%) Gaps:373/1838 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKVTNWDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLT 65
            :::.:.:.:.|.|.|||..|:|..||...:|.:....|..|:.|  |:|      :.:....:.|
 Frog     6 LSETSLFQQTVALFWKNLLLKWRRKWHSTLEWLQNLAFVFLMFL--TIV------IGFNGPTSNT 62

  Fly    66 DLNLLQHSLHRSSYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKI 130
            ||:       .:..||:|.|.              :.|.:.|.....:.:.::|:..||:....:
 Frog    63 DLS-------PARVLGRLDAF--------------YNFSVGYVRTTSISRDIMEKVAQSIIIPDV 106

  Fly   131 CESENATQLELDTVSKN-AFAGVQFDDAWANLTENDPLPNDFHFALRF-----PAELRTATIAIA 189
            ...|.|.:.||.....| :...|.|.|.::           :|...|.     |::.........
 Frog   107 KVEEFADEEELMKAFHNTSMVAVTFVDKFS-----------YHIRYRMHVMGHPSDYFAFMGHCG 160

  Fly   190 NTWLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGEQDLPNVVMKRY 254
            |..|..                    :|..|..||||.||.|:..|.:...|...          
 Frog   161 NDLLYC--------------------LPTYYWSEGFLSLQASIDSAIIEVTSNHS---------- 195

  Fly   255 PFPAYIFDPLLEGMSSIMS------------LIILLSFIY--PCTYI------TKYITAEKEKQL 299
                     :...|:||::            |:.:.||::  |..|:      :.|:|.|: .::
 Frog   196 ---------VWNNMASIVAIKMKSAQLTYRRLVHVASFVFVMPMCYVSLIYLLSLYVTRER-YEM 250

  Fly   300 KEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIV 364
            ||.:::|.|.:...|.:|.:.....:.|.|.|:.::.|      ..:...:::..::|...:|.|
 Frog   251 KETLRLMQLKDLAFWLSWGLLYAGYILIVANLMTLITK------PFIFMTSSYGVIMFLFFLYGV 309

  Fly   365 SSICFCFMMATFFSRASTAAAVTGLIWFIA-YIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGI 428
            :.:.|.||::..| |:..|.||.|  :||. ::.....:....|...:..:..|:....|...|:
 Frog   310 ALMSFTFMLSALF-RSPRATAVAG--FFITLFLSAVGLVLLRKDFPQALAVLLSIFPQFAFAVGL 371

  Fly   429 KLILGFEGTGEGLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPW 493
            ...:..:...||:.:|:.     :.|:..:.:..|.:::..|.|||:.||.|:|:....||....
 Frog   372 LQSVHMDSDLEGVYFSDL-----MGDSSHMLSCFISLVLDSVFYMILTLYFEKVLADKHGVKHEP 431

  Fly   494 NFPFTREFW--------CGEREYTG-------VEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHL 543
            .|.....:|        .|:.:|:|       ||.:|:             :..||. .:::..:
 Frog   432 LFFLKASYWSKEKPSPLMGQTDYSGESSLGDFVEKVPD-------------DLHGKE-AIRIHGV 482

  Fly   544 KKRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING---SDI 601
            ||.|.:|    ..::||.:|::|.:||.||||:||||||.:::|:||:|.:.|:|.|..   |::
 Frog   483 KKTFSDKDKSTEALRGLDLNIYEGQITALLGHSGAGKTTLLNILSGMYPASGGSATICNYKLSNM 547

  Fly   602 RTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVAS 666
            | ::|..:..:|.|||.::.||.::|..::..|:.:||:..|.|..:|.|.|..:::.|..|..:
 Frog   548 R-HLEEIKKRVGFCPQGDIKFDPLTVKENLMVFAMIKGIPTKQVAHKVQKVLSDLQMNDIENTEA 611

  Fly   667 SKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEAD 731
            ..||||.:|||:...|:.||.:|:|.|||::|:||.:|..:|.:|::.|..|..|.:|.||||||
 Frog   612 ITLSGGQRRKLTFGIAILGDPQVLLLDEPTAGLDPCSRHHVWTILKENKADRVTLFSTQFMDEAD 676

  Fly   732 VLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGA 796
            :|.||.|::..|.|||.|:|.|||:::|.||.|.......|:...:|:::.:.||..|.......
 Frog   677 ILADRKAVISKGRLKCVGSSLFLKRKWGIGYHLRMQVSPSCDVELMTSIIKQRIPSAKLTAQNEE 741

  Fly   797 ELSYQLPDSASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDNTGNIKD-QHEIM 860
            ||:|.||......|.::|..|:.|... .:..|||.:|::::||:|:..|    |.|:. .:::.
 Frog   742 ELTYALPFENMDVFPDLFSHLDGQVGN-SIVSYGVSMTTLDDVFLKLEGE----GEIESGDYDVF 801

  Fly   861 NGGSGFRGEDDNESVQSDGIFSENRRLLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVF 925
            |..|  |..:|...:.::        :.:.|.|:|:.....|....|  ||.::|          
 Frog   802 NPES--RTAEDRYDISAE--------MEESLLLMSDSGNVTLSGWEL--WRQQVL---------- 844

  Fly   926 FVVVTILIIKTQGTFQELKPITISLTQYPLA-VTVLDRSNVQN--------------GTGYEIAN 975
             .|..|..:|.:...:.|:.|.:.|..:.|| :..:..:::.|              ..|..:..
 Frog   845 -AVARIRFLKLRHDTKSLRSILLLLVLFILASILSIIMAHISNKFISWELTPSLYFQSPGSRLNK 908

  Fly   976 KYEDLARSYGSNYGLELTGTQGFEDYILDLG----KTIQVRINS--------RYLVAATITESK- 1027
            .|.||.  ..:|.|      ...:|:|   |    :.|.|::.:        :|..|..::::: 
 Frog   909 YYTDLL--IHNNTG------SSIDDFI---GAVKEQNIAVQVANGKYDMDTIKYRGAIEVSQAEK 962

  Fly  1028 ---ITAWLNNQALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQ 1089
               .|...|.:|.:..|:.:|::.||:. |:|..|..::|.|.|:      .:.::    ::..:
 Frog   963 GYNFTIVANPKAHNALPVLLNIISNALL-KVFKVSEHVRVWNHPI------TMDEM----DIHHK 1016

  Fly  1090 LASNLCFCMCFVSSI---YILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVV 1151
            ...::.|.|.|.|.:   ..:...::....|:....:.|:....:|..|.:.|...|  .:|:.:
 Frog  1017 TYISIMFFMIFASGLSPHIAMSSTEDNRINARTQLRLAGLFPSAYWFGQALVDVILY--WSLLFL 1079

  Fly  1152 ITIVCFQETGLSTFGELGRYYLLLLL-----------FGFAVLPFIYIMSLFFREPATGFARVSI 1205
            :|.:.|.....|       |:||..:           :|.||:.::|::|..|     |..::..
 Frog  1080 MTAILFAFNNYS-------YFLLNFITAMVMIAGMFGYGMAVILYVYVISFIF-----GKGKIHR 1132

  Fly  1206 VNIFCGMALFIVVVVMSSELFDTKDTADILGWIF---RIFPHFSLAMSLNKVYTNTATRNACAKA 1267
            .:    .:||.|::.    .|...:...|..|.:   .|||..:|...::  ||..         
 Frog  1133 DS----WSLFFVIIT----FFPASNEISIFPWFYIYLFIFPVTTLYGIMD--YTED--------- 1178

  Fly  1268 GALPPILLCELVPQCCNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFR-----LINELMF 1327
                    .:.:.:..|.          :||.|.|:.:  ::||.::..||::     |..:.:|
 Frog  1179 --------LQFLQEADNF----------ILPCTPYLHI--IIFFGLLWFLEWKFGLRSLTTDPLF 1223

  Fly  1328 KI--RQLISKPPPPPTEGQLDDDVANERERILQMSSNELATKN------LVLDRVTKYY-----G 1379
            :|  |.:..|..|......:|:||..|:||:    .|.....|      :::|.:.|.|     |
 Frog  1224 RISRRNMTVKKNPEELGNDVDEDVLAEKERV----KNAATVANVEEKPVIIVDSLRKEYKVKKRG 1284

  Fly  1380 QFM------AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNS 1438
            .|.      |...:|.||::.|..||||.|||||||:..|:.|:.:.::|...:.|.....:.. 
 Frog  1285 SFFKKNRKAATKNISFCVRKGEVLGLLGPNGAGKTTSMYMLAGEVKPTAGEVVLCGNDPAESTG- 1348

  Fly  1439 IYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGG 1503
               .:|||||.:.|..:||.:|.|.|:..::|:::.........:|.:....:|:.|::...|.|
 Frog  1349 ---FLGYCPQDNPLWPNLTVKEHLEIYAAVKGMKKEDAYIAINRVAAALELKEHMGKESRKLSLG 1410

  Fly  1504 NKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMV-CRIRDSGKSIVLTSHSMEECEALCT 1567
            ..||:..||::||:|:::.||||:||:||.|:::||..: ...::..:..:||:|.|||.||:|.
 Frog  1411 ESRKVCFAISMIGNPNIVLLDEPSTGLDPKAQQRLWRAIRAAFKNKDRGAILTTHYMEEAEAVCD 1475

  Fly  1568 RLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQR 1632
            |:||||:|:.:||||.|.||:||.||.:|:|||:..                            .
 Frog  1476 RVAIMVSGKLRCIGSIQQLKSKFGKGYLLEIKVKET----------------------------H 1512

  Fly  1633 DIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVK-WSRIFGLMESNRDQLNVEDYSVSQTTLE 1696
            .:|.:...:...:|::..|:.:..:|.:.||:..|: .|:.|.|:|..:...|:|:||.||:|||
 Frog  1513 QVDQIHNEIIRIFPHAARQDRFSSLLVYKIPMDNVQSLSQAFLLLEEAKRAYNIEEYSFSQSTLE 1577

  Fly  1697 EIFLEFAKYQ-REDTRAN 1713
            ::|:|.||.| :||...|
 Frog  1578 QVFIELAKEQEKEDFELN 1595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 426/1695 (25%)
abca9XP_031750505.1 rim_protein <170..1595 CDD:130324 416/1612 (26%)

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