DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and abca9

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_031750505.1 Gene:abca9 / 100496782 XenbaseID:XB-GENE-6464273 Length:1608 Species:Xenopus tropicalis


Alignment Length:1838 Identity:458/1838 - (24%)
Similarity:829/1838 - (45%) Gaps:373/1838 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKVTNWDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLT 65
            :::.:.:.:.|.|.|||..|:|..||...:|.:....|..|:.|  |:|      :.:....:.|
 Frog     6 LSETSLFQQTVALFWKNLLLKWRRKWHSTLEWLQNLAFVFLMFL--TIV------IGFNGPTSNT 62

  Fly    66 DLNLLQHSLHRSSYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKI 130
            ||:       .:..||:|.|.              :.|.:.|.....:.:.::|:..||:....:
 Frog    63 DLS-------PARVLGRLDAF--------------YNFSVGYVRTTSISRDIMEKVAQSIIIPDV 106

  Fly   131 CESENATQLELDTVSKN-AFAGVQFDDAWANLTENDPLPNDFHFALRF-----PAELRTATIAIA 189
            ...|.|.:.||.....| :...|.|.|.::           :|...|.     |::.........
 Frog   107 KVEEFADEEELMKAFHNTSMVAVTFVDKFS-----------YHIRYRMHVMGHPSDYFAFMGHCG 160

  Fly   190 NTWLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGEQDLPNVVMKRY 254
            |..|..                    :|..|..||||.||.|:..|.:...|...          
 Frog   161 NDLLYC--------------------LPTYYWSEGFLSLQASIDSAIIEVTSNHS---------- 195

  Fly   255 PFPAYIFDPLLEGMSSIMS------------LIILLSFIY--PCTYI------TKYITAEKEKQL 299
                     :...|:||::            |:.:.||::  |..|:      :.|:|.|: .::
 Frog   196 ---------VWNNMASIVAIKMKSAQLTYRRLVHVASFVFVMPMCYVSLIYLLSLYVTRER-YEM 250

  Fly   300 KEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIV 364
            ||.:::|.|.:...|.:|.:.....:.|.|.|:.::.|      ..:...:::..::|...:|.|
 Frog   251 KETLRLMQLKDLAFWLSWGLLYAGYILIVANLMTLITK------PFIFMTSSYGVIMFLFFLYGV 309

  Fly   365 SSICFCFMMATFFSRASTAAAVTGLIWFIA-YIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGI 428
            :.:.|.||::..| |:..|.||.|  :||. ::.....:....|...:..:..|:....|...|:
 Frog   310 ALMSFTFMLSALF-RSPRATAVAG--FFITLFLSAVGLVLLRKDFPQALAVLLSIFPQFAFAVGL 371

  Fly   429 KLILGFEGTGEGLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPW 493
            ...:..:...||:.:|:.     :.|:..:.:..|.:::..|.|||:.||.|:|:....||....
 Frog   372 LQSVHMDSDLEGVYFSDL-----MGDSSHMLSCFISLVLDSVFYMILTLYFEKVLADKHGVKHEP 431

  Fly   494 NFPFTREFW--------CGEREYTG-------VEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHL 543
            .|.....:|        .|:.:|:|       ||.:|:             :..||. .:::..:
 Frog   432 LFFLKASYWSKEKPSPLMGQTDYSGESSLGDFVEKVPD-------------DLHGKE-AIRIHGV 482

  Fly   544 KKRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING---SDI 601
            ||.|.:|    ..::||.:|::|.:||.||||:||||||.:::|:||:|.:.|:|.|..   |::
 Frog   483 KKTFSDKDKSTEALRGLDLNIYEGQITALLGHSGAGKTTLLNILSGMYPASGGSATICNYKLSNM 547

  Fly   602 RTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVAS 666
            | ::|..:..:|.|||.::.||.::|..::..|:.:||:..|.|..:|.|.|..:::.|..|..:
 Frog   548 R-HLEEIKKRVGFCPQGDIKFDPLTVKENLMVFAMIKGIPTKQVAHKVQKVLSDLQMNDIENTEA 611

  Fly   667 SKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEAD 731
            ..||||.:|||:...|:.||.:|:|.|||::|:||.:|..:|.:|::.|..|..|.:|.||||||
 Frog   612 ITLSGGQRRKLTFGIAILGDPQVLLLDEPTAGLDPCSRHHVWTILKENKADRVTLFSTQFMDEAD 676

  Fly   732 VLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGA 796
            :|.||.|::..|.|||.|:|.|||:::|.||.|.......|:...:|:::.:.||..|.......
 Frog   677 ILADRKAVISKGRLKCVGSSLFLKRKWGIGYHLRMQVSPSCDVELMTSIIKQRIPSAKLTAQNEE 741

  Fly   797 ELSYQLPDSASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDNTGNIKD-QHEIM 860
            ||:|.||......|.::|..|:.|... .:..|||.:|::::||:|:..|    |.|:. .:::.
 Frog   742 ELTYALPFENMDVFPDLFSHLDGQVGN-SIVSYGVSMTTLDDVFLKLEGE----GEIESGDYDVF 801

  Fly   861 NGGSGFRGEDDNESVQSDGIFSENRRLLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVF 925
            |..|  |..:|...:.::        :.:.|.|:|:.....|....|  ||.::|          
 Frog   802 NPES--RTAEDRYDISAE--------MEESLLLMSDSGNVTLSGWEL--WRQQVL---------- 844

  Fly   926 FVVVTILIIKTQGTFQELKPITISLTQYPLA-VTVLDRSNVQN--------------GTGYEIAN 975
             .|..|..:|.:...:.|:.|.:.|..:.|| :..:..:::.|              ..|..:..
 Frog   845 -AVARIRFLKLRHDTKSLRSILLLLVLFILASILSIIMAHISNKFISWELTPSLYFQSPGSRLNK 908

  Fly   976 KYEDLARSYGSNYGLELTGTQGFEDYILDLG----KTIQVRINS--------RYLVAATITESK- 1027
            .|.||.  ..:|.|      ...:|:|   |    :.|.|::.:        :|..|..::::: 
 Frog   909 YYTDLL--IHNNTG------SSIDDFI---GAVKEQNIAVQVANGKYDMDTIKYRGAIEVSQAEK 962

  Fly  1028 ---ITAWLNNQALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQ 1089
               .|...|.:|.:..|:.:|::.||:. |:|..|..::|.|.|:      .:.::    ::..:
 Frog   963 GYNFTIVANPKAHNALPVLLNIISNALL-KVFKVSEHVRVWNHPI------TMDEM----DIHHK 1016

  Fly  1090 LASNLCFCMCFVSSI---YILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVV 1151
            ...::.|.|.|.|.:   ..:...::....|:....:.|:....:|..|.:.|...|  .:|:.:
 Frog  1017 TYISIMFFMIFASGLSPHIAMSSTEDNRINARTQLRLAGLFPSAYWFGQALVDVILY--WSLLFL 1079

  Fly  1152 ITIVCFQETGLSTFGELGRYYLLLLL-----------FGFAVLPFIYIMSLFFREPATGFARVSI 1205
            :|.:.|.....|       |:||..:           :|.||:.::|::|..|     |..::..
 Frog  1080 MTAILFAFNNYS-------YFLLNFITAMVMIAGMFGYGMAVILYVYVISFIF-----GKGKIHR 1132

  Fly  1206 VNIFCGMALFIVVVVMSSELFDTKDTADILGWIF---RIFPHFSLAMSLNKVYTNTATRNACAKA 1267
            .:    .:||.|::.    .|...:...|..|.:   .|||..:|...::  ||..         
 Frog  1133 DS----WSLFFVIIT----FFPASNEISIFPWFYIYLFIFPVTTLYGIMD--YTED--------- 1178

  Fly  1268 GALPPILLCELVPQCCNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFR-----LINELMF 1327
                    .:.:.:..|.          :||.|.|:.:  ::||.::..||::     |..:.:|
 Frog  1179 --------LQFLQEADNF----------ILPCTPYLHI--IIFFGLLWFLEWKFGLRSLTTDPLF 1223

  Fly  1328 KI--RQLISKPPPPPTEGQLDDDVANERERILQMSSNELATKN------LVLDRVTKYY-----G 1379
            :|  |.:..|..|......:|:||..|:||:    .|.....|      :::|.:.|.|     |
 Frog  1224 RISRRNMTVKKNPEELGNDVDEDVLAEKERV----KNAATVANVEEKPVIIVDSLRKEYKVKKRG 1284

  Fly  1380 QFM------AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNS 1438
            .|.      |...:|.||::.|..||||.|||||||:..|:.|:.:.::|...:.|.....:.. 
 Frog  1285 SFFKKNRKAATKNISFCVRKGEVLGLLGPNGAGKTTSMYMLAGEVKPTAGEVVLCGNDPAESTG- 1348

  Fly  1439 IYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGG 1503
               .:|||||.:.|..:||.:|.|.|:..::|:::.........:|.:....:|:.|::...|.|
 Frog  1349 ---FLGYCPQDNPLWPNLTVKEHLEIYAAVKGMKKEDAYIAINRVAAALELKEHMGKESRKLSLG 1410

  Fly  1504 NKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMV-CRIRDSGKSIVLTSHSMEECEALCT 1567
            ..||:..||::||:|:::.||||:||:||.|:::||..: ...::..:..:||:|.|||.||:|.
 Frog  1411 ESRKVCFAISMIGNPNIVLLDEPSTGLDPKAQQRLWRAIRAAFKNKDRGAILTTHYMEEAEAVCD 1475

  Fly  1568 RLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQR 1632
            |:||||:|:.:||||.|.||:||.||.:|:|||:..                            .
 Frog  1476 RVAIMVSGKLRCIGSIQQLKSKFGKGYLLEIKVKET----------------------------H 1512

  Fly  1633 DIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVK-WSRIFGLMESNRDQLNVEDYSVSQTTLE 1696
            .:|.:...:...:|::..|:.:..:|.:.||:..|: .|:.|.|:|..:...|:|:||.||:|||
 Frog  1513 QVDQIHNEIIRIFPHAARQDRFSSLLVYKIPMDNVQSLSQAFLLLEEAKRAYNIEEYSFSQSTLE 1577

  Fly  1697 EIFLEFAKYQ-REDTRAN 1713
            ::|:|.||.| :||...|
 Frog  1578 QVFIELAKEQEKEDFELN 1595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 39/200 (20%)
ABC2_membrane_3 <269..475 CDD:289468 46/226 (20%)
CcmA 538..843 CDD:224054 115/311 (37%)
ABC_subfamily_A 538..755 CDD:213230 89/223 (40%)
ABC2_membrane_3 913..1316 CDD:289468 79/450 (18%)
ABC_subfamily_A 1369..1587 CDD:213230 80/229 (35%)
drrA 1376..1702 CDD:130256 110/338 (33%)
abca9XP_031750505.1 rim_protein <170..1595 CDD:130324 416/1612 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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