DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abca3 and abca3

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_004918068.1 Gene:abca3 / 100490925 XenbaseID:XB-GENE-1010698 Length:1720 Species:Xenopus tropicalis


Alignment Length:1774 Identity:663/1774 - (37%)
Similarity:979/1774 - (55%) Gaps:163/1774 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQHSLHR 76
            ||||||:.||.......||||.||.:||.:|:.:|..|.:    |.|.|.           :|:|
 Frog    25 LLLWKNYILQKRQVLVTVIELALPLLFSAILIALRHRVPS----VTYPNA-----------TLYR 74

  Fly    77 SSYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKI----------- 130
            ......|..:..|.           .:.|.|.|.:   .|........:|.:..           
 Frog    75 EMPFPNLPFIPGPR-----------PWELAYVPSH---SKAAHSIILDVGNHLFPYYFANQSARG 125

  Fly   131 --CESENATQLELDTVSKNAFAGVQFDDAWANLTENDPLPNDFHFALRFPAELRTATIA------ 187
              .|.:....:..:..|....|.|.|:..:.:  ..||||....:.|||....|.|.::      
 Frog   126 FPTEEDFEDYIRHNNHSSKILAAVVFEHNFNH--SGDPLPLQVRYRLRFKYSPRNAPMSEQTGLN 188

  Fly   188 --IANTWLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGEQ-----D 245
              :...|.|..|:|...:.|||..||..|| .|||.|||||.:||.:..|.:|..:.|.     |
 Frog   189 PNVDRNWHTRYLYPLFQMPGPREAGDKTGG-TPGYQREGFLAMQHEVDRAIMRYHANESGRLLLD 252

  Fly   246 LPNVVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMGLSN 310
            ..:|.::|:|:|.|:.|..:..:.:.:.|:::|||.|....|.:.:..|||::|||.|::||||:
 Frog   253 NIDVAIRRFPYPPYVNDLFILAIQNQLPLLLMLSFTYTSLSIVRALVLEKERKLKEYMRVMGLSS 317

  Fly   311 WLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFMMAT 375
            |||.||||:..|::|.:|...:.:|:.|..|.:.||||.::.:.:..:::::.||:|.|.||:::
 Frog   318 WLHSTAWFIHFFLLLLVSVFFVTLLLCIQVSSEGAVLTRSDPSLVFVYILVFSVSTISFSFMISS 382

  Fly   376 FFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEG 440
            |||||:.|||..|.::|::||||.|....||:|:..:|:...|.||..|..|.:||..|||.|.|
 Frog   383 FFSRANMAAAAGGFLYFLSYIPYFFISPWYDELNHGAKVSSCLFSNVGMAMGAQLIGMFEGKGTG 447

  Fly   441 LQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFWCG- 504
            .||||.||||||||..|||.|:.|:::.||:|.::..|||.||||.:|||:||.|.|...:||| 
 Frog   448 AQWSNLFTPVSVDDNFTLGQVLQMLMLDCVLYFLVGWYVESVMPGDYGVPQPWYFCFLPSYWCGT 512

  Fly   505 EREYTGVEDIPNGHVEQRDPKA------FETEPEGKHIGLQMRHLKKRF---GNKMV-VKGLSMN 559
            .|...|:|     ..:..||:.      .|.||.....|::::||.|.:   |.|.: |:.|::|
 Frog   513 PRLVEGLE-----KEDDEDPEKALKGEYLEEEPSDLVPGIRIKHLTKVYHASGKKRIAVRDLTLN 572

  Fly   560 MFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDE 624
            |:|.::|||||||||||:||:|||||:.||:||...|.|.:|..:....|.|||:||||:|||..
 Frog   573 MYEGQVTVLLGHNGAGKSTTLSMLTGLSPPSSGECYIGGYEITRDTALIRRSLGLCPQHDVLFQG 637

  Fly   625 MSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKV 689
            ::|..|:.|::.:||.......:||.|.|:::.||:|.|..|::||||..||||:..||.|.:||
 Frog   638 LTVEEHLYFYAGLKGCPRWCCPEEVEKILQILRLEEKRNALSTQLSGGTCRKLSIGIALIGGSKV 702

  Fly   690 VLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFL 754
            |:.|||:|||||::||..|:||:|.|..||||||||||||||:|||||||:..|:|:|.|:..||
 Frog   703 VMLDEPTSGMDPASRRDTWELLRQHKHDRTLLLTTHFMDEADILGDRIAILAQGQLQCCGSPLFL 767

  Fly   755 KKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEE 819
            |.:||:||.::.||...|:..::|.|:..|:|....|.:.||||||.||..::.:||.:|.:||.
 Frog   768 KCKYGAGYHMVMVKEPHCQVEDITHLITSYVPNATLESNAGAELSYILPKESTHRFEPLFSELEL 832

  Fly   820 QSDELHLNGYGVGITSMEEVFMKVGAEKDNTGNIKD--------QHEIMNGGSGFR--------G 868
            :.:||.:..||..:|:|||||::||...|.:.:|:.        |||......|..        .
 Frog   833 RREELGIASYGASVTTMEEVFLRVGKLVDTSLDIQAIQLPPLQYQHERRANDWGTEESCSMSDCT 897

  Fly   869 EDDNESVQSDGIFSENRRLLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILI 933
            ||....:..|   ..|.:|.....|...|:.|:.:|:..|:|||..:::.|.::|:.|..:.:::
 Frog   898 EDSGTLITED---CSNIKLNGKCTLWCQQFYALFVKRAAYSWRNWKMVVGQFLVPLVFTTLALVV 959

  Fly   934 IKTQGTFQELKPITISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELTGTQ-- 996
            .||....|:..|:.:||..|...|           ..|.:......|.:|...|:..:.:|.|  
 Frog   960 GKTFPGPQDSPPLDLSLVPYGYTV-----------VPYSLPPNASTLLQSLADNFRDQFSGQQME 1013

  Fly   997 ------GFEDYILDLGKTIQVRINSRYLVAATI----TESKITAWLNNQALHTAPLTVNMVHNAI 1051
                  ..::|:|............|.|.||.|    :..|:||..||||.|.....:.:|.||:
 Frog  1014 PQEVLDDLDNYLLTRASDEGALFAERCLCAADIQNLGSRIKVTARFNNQAYHAVASALALVDNAL 1078

  Fly  1052 ADKLFGSSVKIQVTNAPLP-YTTSTLLSQLSTGNNLGTQLASNLCFCMCFVSSIYILFLIKERES 1115
            ...:.|....|.|||.|.| .||.|...||..| ..|..:|.||.:.|..::|.:.|.|:.||..
 Frog  1079 FKLIAGPEASISVTNYPQPRNTTETAQDQLLEG-QAGFAIAINLLYGMASLASTFSLLLVGERAV 1142

  Fly  1116 RAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLLFGF 1180
            ::|.:|||.|....::|||....|..::::....::.....|.....:....|....|:|||:|:
 Frog  1143 KSKHVQFVSGASALSYWLSALTWDLLNFLIPCTFMLAVFQAFDVRAYTEEHHLVDVILMLLLYGW 1207

  Fly  1181 AVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHF 1245
            ||:|.:|:.|..|...||.:.|::|.||..|.|.|:.|.:||.......|.:.||..:|.:.|::
 Frog  1208 AVIPLMYLFSFLFTSTATAYTRLTIFNILSGTASFLSVTIMSIPALGLVDLSHILDQVFLVLPNY 1272

  Fly  1246 SLAMSLNKVYTNTATRNACAKAGALPPILLCELVPQCCNLKPYFAWEEPGVLPETVYMAVTGVVF 1310
            .|..|.:..|.|......|..:..  ..::|:.....|. ..||:|..|||......|||.|..|
 Frog  1273 CLGRSFSDFYQNYHLLKFCRSSPR--SAIICQAFNITCQ-DNYFSWSSPGVGRYLTAMAVQGSAF 1334

  Fly  1311 FLIIIVLEFRLINEL-----MFKIRQLISKPPPP--PTEGQLDDDVANERERILQMSSNELA--T 1366
            ..::.::|.::...|     .:|..:..|.|..|  |.|   |.|||:||:::|:....:|:  :
 Frog  1335 LCLLFIIESQIFCRLYNLCRSYKEHRWASLPESPVSPPE---DRDVADERKKVLESPLEQLSALS 1396

  Fly  1367 KNLVLDRVTKYYGQ---FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQ 1428
            ..||:..::|.||:   .:||:::||.|...|||||||.|||||||||:|:||||.:|||.||:.
 Frog  1397 SPLVIRELSKVYGRRALVLAVDRISLAVGRGECFGLLGFNGAGKTTTFRMLTGDETVSSGDAYID 1461

  Fly  1429 GLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHI 1493
            |.|:..::..:.:.||||||||.|||.:||||.|.::..||||.|..|....|::.:......|.
 Frog  1462 GYSILRHIKKVQQRIGYCPQFDPLLDHMTGRETLCMYARLRGVPEGYINSCVENMLRGLLLEAHA 1526

  Fly  1494 DKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHS 1558
            :|....||||||||||..||:||.||||::|||:|||||.|||.||:.|.|.|::||::::||||
 Frog  1527 NKLVRTYSGGNKRKLSAGIALIGGPSVIFMDEPSTGMDPVARRLLWDAVTRTRENGKAVIITSHS 1591

  Fly  1559 MEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQ 1623
            |||||||||||||||||:.||:||.|||||||..|..|..|..|..|.|.               
 Frog  1592 MEECEALCTRLAIMVNGQLKCLGSPQHLKNKFGSGYTLLAKTSRGAEELM--------------- 1641

  Fly  1624 TVPAQMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDY 1688
                        |.|:||||.:|.|:|:.|:||::.::|....:.|:::||.:|..:::.::|||
 Frog  1642 ------------AFKDFVETIFPGSVLKHEHQGMVHYHITSQELSWAQVFGTLEKAKEKFDLEDY 1694

  Fly  1689 SVSQTTLEEIFLEFAKYQR 1707
            .|||.:||::||.|:.:|:
 Frog  1695 CVSQISLEQVFLSFSHFQQ 1713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 631/1636 (39%)
abca3XP_004918068.1 rim_protein 17..>90 CDD:130324 26/90 (29%)
rim_protein <147..1712 CDD:130324 629/1620 (39%)

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