DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abca3 and abca10

DIOPT Version :10

Sequence 1:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_031750511.1 Gene:abca10 / 100485734 XenbaseID:XB-GENE-6464279 Length:1610 Species:Xenopus tropicalis


Alignment Length:1833 Identity:463/1833 - (25%)
Similarity:811/1833 - (44%) Gaps:361/1833 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKVTNWDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLT 65
            :::.:.:.:.|.|.|||..|:|..||...:|.:....|..|:.|.        ..:..|...:..
 Frog     6 LSETSLFQQTVALFWKNLLLKWRRKWHSTLEWLQNLAFVFLMFLT--------VAIELYGPTSDI 62

  Fly    66 DLNLLQHSLHRSSYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKI 130
            ||:       .:..||:|.|            |:...  :.|.......:.::|:..:.:....|
 Frog    63 DLS-------PAWVLGRLDA------------FNNLS--VGYVHTTSTSRDIMEKVAKGIIVPDI 106

  Fly   131 CESENATQLEL-DTVSKNAFAGVQFDDAWANLTENDPLPNDFHFALRFPAELRTATIAIANTWLT 194
            ...|.|.:.|| :.||..:...|.|.|             :|.:.:|:.              |.
 Frog   107 KVQEFADEEELIEAVSNMSMVAVTFVD-------------EFSYHIRYQ--------------LP 144

  Fly   195 MRLFPTIDLTGPRNEGDDDGGIPPGYL-REGFLPLQHSLSMAYLRQKSGE---QDLPNVV---MK 252
            .|..|........|.|||.....|.|. .||||.||.|:..|.:...|..   .::.::|   ||
 Frog   145 KRKHPNDYFAYMGNCGDDLSYCNPTYYWSEGFLSLQASIDSAIIDLTSNHSVWNNMASIVAIKMK 209

  Fly   253 RYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYI------TKYITAEKEKQLKEVMKIMGLSNW 311
            .           .|....:::.:....|:.|..|:      ::|:|.|: .::||.:::|.|.:.
 Frog   210 S-----------AERSYKVLAHVASFIFVMPMCYVSLMYLLSQYVTRER-YEMKETLRLMRLQDL 262

  Fly   312 LHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATF 376
            ..|.:|.:.....:.|.|.|:.::.|      ..|...:::..::|...:|.|:.:.|.||::..
 Frog   263 AFWLSWGLLYSCYVFIVANLMTLVTK------PFVFITSSYGIIMFMFFLYGVALMSFTFMLSAL 321

  Fly   377 F--SRASTAA--------AVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLI 431
            |  .||:..|        :..|||....::|.|..:.            .|:....|...||...
 Frog   322 FRNPRATAIAGFFITLLLSALGLILLSKHVPKSVEVL------------LSIFPQFAFAVGITQS 374

  Fly   432 LGFEGTGEGLQWSNFFTPVSVDDTLTLG-----AVMIMMLVSCVIYMIICLYVEQVMPGSFGVPR 491
            :..|...||:.:|:          ||.|     :..|.:::..|.||.:.||.|:|:....||..
 Frog   375 VHMENDQEGVYFSD----------LTGGSSHMLSCFISLVLDSVFYMGLTLYFEKVLADKHGVKH 429

  Fly   492 PWNFPFTREFWCGER--------EYTGVEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHLKKRF- 547
            ...|.....:|..|:        :.:|...:  ||..::.|    .:..||. .:::..:||.: 
 Frog   430 EPLFFLKASYWSKEKPSPLMAQTDDSGESSL--GHFVEKVP----ADLHGKE-AIRIHGVKKTYY 487

  Fly   548 ---GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING---SDIRTNIE 606
               .|...::.|.:|::|.:||.||||:||||||.:::|:||.|.:.|:|.:..   |::| ::.
 Frog   488 DKDKNTEALRDLDLNIYEGQITALLGHSGAGKTTLLNILSGMCPTSGGSATVCNYKLSNMR-HLG 551

  Fly   607 GARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSG 671
            ..:..:|.|||.::.||.::|..::..|:.:||:..|.|..:|...|..:::.|..|:.:|||||
 Frog   552 EIKKRVGFCPQGDIKFDPLTVKENLTVFAMIKGIPSKEVAHKVQTVLSDLQMNDIENIEASKLSG 616

  Fly   672 GMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDR 736
            |.||||:...|:.||.:|:|.|||::|:||.:|..:|.:|::.|..|..||:|.||||||:|.||
 Frog   617 GQKRKLTFGIAILGDPQVLLLDEPTAGLDPCSRHNIWTILKESKADRVTLLSTQFMDEADILADR 681

  Fly   737 IAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQ 801
            ..::..|:|||.|||.|||:::|.||.|.......|:...:|:::.::||..|.......||:|.
 Frog   682 KVVISKGKLKCVGTSLFLKRKWGVGYHLRMQVSPSCDVELMTSIIKQHIPSTKLTTQNEEELTYT 746

  Fly   802 LPDSASAKFEEMFGQLEEQSDELHLNG--------YGVGITSMEEVFMKVGAEKDNTGNIKD-QH 857
            ||......|.::|         |||:|        |||.:|::::||:|:..|    |.|:. .:
 Frog   747 LPFENMDVFPDLF---------LHLDGQVGNSIVNYGVSMTTLDDVFLKLEGE----GEIESGDY 798

  Fly   858 EIMNGGSGFRGEDDNESVQSD------GIFSENRRLLQGLQLLSNQWKA------MLLKKFLYTW 910
            ::.|..|  |..:|.|...::      .:.......|.|.:|...|..|      :.|:....::
 Frog   799 DVFNPES--RTNEDREDFSTEMEESLLQMSDSGNVTLSGWELWRQQVLAVARIRLLKLRHDTKSF 861

  Fly   911 RNKLLLLIQNIMPVFFVVVTILIIKTQGTFQELKPITISLTQYPLAVTVLDRSN-------VQNG 968
            |:.||||:...:|...:::|..|:.|...::        ||.:....:..:|.|       :.|.
 Frog   862 RSILLLLVVITLPPIIIIITSNIVNTFDAWE--------LTPHLYFQSPRNRLNKYYTDLLICNN 918

  Fly   969 TGYEIANKYEDLARSYGSNYGLELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKITAWLN 1033
            ||..|    ||...:. ....:|:....|..|       |..|:......|:........|...|
 Frog   919 TGSSI----EDFVGAV-KEQNIEVQVVNGEYD-------TETVKYRGAIEVSQMEKGYNFTIVAN 971

  Fly  1034 NQALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQLA----SNL 1094
            .:|.::.|:.:|::.||:. |:...|...:|.|.|:  ||.            ||.:.    .:|
 Frog   972 PKAFNSLPVLLNIISNALL-KILKVSGHFRVWNHPI--TTD------------GTDIIFLPYMSL 1021

  Fly  1095 CFCMCFVSSI---YILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVC 1156
            .|.:.|.|:.   ..:...::....|:....:.|:....:|..|.:.|...|.:...::|.....
 Frog  1022 IFFIIFASAFCPHIAMSSTEDNRINARNQLRISGLFPSAYWFGQALVDVILYWILLFLMVAIYFA 1086

  Fly  1157 FQETGLSTFGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVV-- 1219
            |....|..|.......:.::.:|.|::.::|::|..|   ..|.:...      ..:||.|:.  
 Frog  1087 FNSYILLDFVPAMVMIIGIIGYGTAMVLYVYVISFIF---GRGKSHTD------SWSLFFVITST 1142

  Fly  1220 --VMSSELFDTKDTADILGWIFRIFPHFSLAMSLNKVYTNTATRNACAKAGALPPIL-------- 1274
              ||..::|           :||:|..:....                .|.||..|:        
 Frog  1143 FPVMFMDVF-----------MFRLFTIYYFVF----------------PASALSGIMEYTYRLQV 1180

  Fly  1275 ------LCELVPQCCNLKPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFR-----LINELMFK 1328
                  ...|:.||                 |.|:.:  ::||:::..||::     |..:.:|:
 Frog  1181 FPGGSEYTALIEQC-----------------TPYLHI--IIFFVLLWFLEWKFGLRSLTIDPLFR 1226

  Fly  1329 I--RQLISKPPPPPTEGQLDDDVANERERILQMS--SNELATKNLVLDRVTKYY-----GQFM-- 1382
            |  |::.:|..|......:|:||..|:||:.:.:  :|......::.|.:.|.|     |.|.  
 Frog  1227 ISRRKITTKKNPEELGNDVDEDVLAEKERVKKAATIANVEEKPVIIADSLRKEYKVKKGGSFFKK 1291

  Fly  1383 ----AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMI 1443
                |...||.||::.|..||||.|||||||:..|:.|:.:.::|...:.|.....:..    .:
 Frog  1292 NKRAATKNVSFCVKKGEVLGLLGPNGAGKTTSMYMLAGEVKPTAGEVLLCGNDPVGSTG----FL 1352

  Fly  1444 GYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKL 1508
            |||||.:.|..:||.:|.|.|:..::|:::.........:|.:....:|:.|.....|.|..||:
 Frog  1353 GYCPQDNPLWPNLTVKEHLEIYAAVKGMKKEDASIAINRVASALELKEHMGKAARKLSLGVSRKV 1417

  Fly  1509 STAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMV-CRIRDSGKSIVLTSHSMEECEALCTRLAIM 1572
            ..||:::|:|:::.||||:||:||..:::||..: ...::..:..:||:|.|||.||:|.|:|||
 Frog  1418 CFAISMLGNPNIVLLDEPSTGLDPKGQQRLWRAIRAAFKNKDRGAILTTHYMEEAEAVCDRVAIM 1482

  Fly  1573 VNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQRDIDAV 1637
            |:|:.:||||.|.||:||.||.:|:|||:.:                            ..:|.:
 Frog  1483 VSGKLRCIGSIQQLKSKFGKGYLLEIKVKES----------------------------HQVDQI 1519

  Fly  1638 KEFVETEYPNSILQEEYQGILTFYIPLTGVK-WSRIFGLMESNRDQLNVEDYSVSQTTLEEIFLE 1701
            ...:...:|::..|:.:..:|.:.||:..|: .|:.|.|:|..:...|:|:||.||:|||::|:|
 Frog  1520 HNEIIRIFPHAARQDRFSSLLVYKIPMDNVQSLSQAFLLLEEAKRAYNIEEYSFSQSTLEQVFIE 1584

  Fly  1702 FAKYQ-REDTRAN 1713
            .||.| :||...|
 Frog  1585 LAKEQEKEDFELN 1597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 434/1690 (26%)
abca10XP_031750511.1 rim_protein <107..1597 CDD:130324 438/1701 (26%)

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