DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and abca5

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:XP_005156458.1 Gene:abca5 / 100151075 ZFINID:ZDB-GENE-050517-5 Length:1673 Species:Danio rerio


Alignment Length:1832 Identity:469/1832 - (25%)
Similarity:840/1832 - (45%) Gaps:352/1832 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 WDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQ 71
            |.:...||:||..::|..|.|.:.||:||.:...||:|:.||                       
Zfish    31 WHQTRSLLYKNLLIKWRTKQQSLQELILPLLLLGLLILISTL----------------------- 72

  Fly    72 HSLHRSSYLGKLIALIAPNRRRKNGGFS--KFEFI-------LCYSPVNPVLKKLVEEAWQSLGK 127
                              |.....|..|  :.||.       |.|:|:......::||..:.|..
Zfish    73 ------------------NPHVSYGSISTKELEFERELPVKGLGYTPITNFTNHIMEEVARELSM 119

  Fly   128 NKICESENATQLELDTVS---KNAFAGVQFDDA--------WANLTENDPLPNDFHFALRFPAEL 181
            |:..:. .:|:.:|:..|   ...:.||.|.|:        ::.|    |||:||          
Zfish   120 NEHLDM-FSTEADLENASLYEPEGYVGVVFLDSMSYRLRFPYSQL----PLPSDF---------- 169

  Fly   182 RTATIAIANT-WLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGE-- 243
             |.:|....| ::..|                    ...|...||:.||..:..|.::.|:..  
Zfish   170 -TESITSCYTNYVNCR--------------------AANYWYSGFIRLQSVIDAAIIQMKTKRPV 213

  Fly   244 -QDLP-NVVMKRYP-------FPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQL 299
             .:|. ..||..:|       ||           .:::|:.::|:|....:::...:.||||::|
Zfish   214 WNELKVRAVMMGHPGSVEVQKFP-----------HALISIYLVLAFTPFVSFLIVNVAAEKEQRL 267

  Fly   300 KEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIV 364
            |:.|.:|||.:...|.:|.:....::|..:||:|::...     ..:.:::||..:...:.:|.:
Zfish   268 KDTMGMMGLYDSAFWLSWGLLYAALVTTMSILMAVIATC-----TPLFSNSNFFVIFLLIFLYGI 327

  Fly   365 SSICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGW--SLISNTAMGFG 427
            |||.|.||:...|.:...|:.|..::..:......||:...|   ......|  .|:|.:|...|
Zfish   328 SSIFFSFMLTPLFKKPKFASTVGSMLTVVFGCLSLFTVLMRD---FPQSAVWLLCLLSPSAFSIG 389

  Fly   428 IKLILGFEGTGEGLQWSN-------FFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPG 485
            |..::..|..|:|..:|:       .:.|            ::|:.:.|::|:::.:|::||:||
Zfish   390 IAQVVYLEAQGDGAVFSSLGNGPHALYVP------------LVMLFLDCILYLLLAIYLDQVLPG 442

  Fly   486 SFGVPRPWNFPFTREFWCGERE-YTGVEDIPNGHVE-----QRDPKAFETEPEGKHIGLQMRHLK 544
            .||..|...:.....:|...|: |..|..:..|.|.     ....:|...|..||.: :::.:::
Zfish   443 EFGTKRSVLYFLKPSYWSKRRKRYVEVSSVYEGEVNGTPAIDESVEAVSPEFRGKEV-IRICNIR 506

  Fly   545 KRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNI 605
            |.:..|    ..::||:.:::|.:||.||||:||||:|.:::|.|:.|||.|||.|.||.:....
Zfish   507 KIYREKDTKVEALRGLTFDIYEGQITALLGHSGAGKSTLMNILCGICPPTEGTATIYGSPVAEIA 571

  Fly   606 EGARMS--LGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSK 668
            |||.|.  :|||||.|::||.::|..|:|.|:.:||:....::.||.|.||.::||...:..:..
Zfish   572 EGAEMKQLVGICPQFNIIFDVLTVEEHLRIFAAIKGILPSDIDGEVRKVLKDLDLEKIMDALAKN 636

  Fly   669 LSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVL 733
            ||||.||||||..|:.||.|::|.|||::||||.:|.|:|.||:..:.||..:|:||:|||||:|
Zfish   637 LSGGQKRKLSVGIAILGDPKILLLDEPTAGMDPVSRHQVWSLLKSRRAGRVTVLSTHYMDEADIL 701

  Fly   734 GDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAEL 798
            .||.|::..|:|||.|:|.:||.:.|.||.|.....:.||...:|:|:.:::|..:......|||
Zfish   702 ADRKAVISQGQLKCVGSSLYLKTKCGVGYHLRMSVTEGCEVEGITSLVKQHVPKAQLSRQQEAEL 766

  Fly   799 SYQLPDSASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKD---NTGNIKDQHEIM 860
            ::.||..:...|..:|.:|:.:.| |.:..|||.:|::|:||:::.||.:   ...::.:|.::.
Zfish   767 TFTLPFESMDTFPGLFAELDCRPD-LGIINYGVSMTTLEDVFLRLEAEAEVDQADYSVFNQEKVE 830

  Fly   861 NGGSGFRGEDDNESVQSDGIFSENRR-LLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPV 924
            ..|.....:|.::.:.:   ||::|: .:.|..|...|:..:.....|...|.:..::....:.|
Zfish   831 EEGDASSMDDTDQRLLT---FSDSRQDTVTGHALWRQQFSTVAWLHMLNLQRERKPIIYNLTLFV 892

  Fly   925 FFVVVTILIIKTQGTFQELKPITISLTQYPLAVTVLDRSN-----------VQNGTGYEIANKYE 978
            .|:...:::....|..|...|..:....|.|      |.|           |||.|..:::....
Zfish   893 VFLSAMLILSVATGNIQIHSPERLFSPIYLL------RRNEAPHKYTTSLLVQNSTDSDLSGFIH 951

  Fly   979 DLARSYGSNYGLELTGTQGFEDYILDLGKTIQVRINSRYLVAATIT-------ESKITAWL---N 1033
            :|..                :|..:::.|.:.      |:.||.::       .||...::   |
Zfish   952 NLQS----------------QDIKVEMMKKLD------YMSAAPVSAAINVTGPSKDFTYILAFN 994

  Fly  1034 NQALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCM 1098
            :..:|:.|:.||::.||:. :.:..:..|:..:.|..|                 |:.....:.:
Zfish   995 STTVHSLPMAVNVLSNALL-RGYNGTGHIRTWSKPFDY-----------------QIPDKTSYAL 1041

  Fly  1099 CFVSSIYILFL------------IKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVV 1151
            .::.::.:..|            .::||.:.:....:.|:....:|..|...|...|.:....:.
Zfish  1042 VYIEAVILGMLAAGMPAYFAMDHTRDRELKCRSTLRISGLVPSAYWCGQAAIDVPFYYLILTCMT 1106

  Fly  1152 ITIVCFQETGLSTFGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFI 1216
            .|:..|..|.|.|...:....|.|:.|..|::.|.|.:|..       |.||.....|..:...:
Zfish  1107 STLFAFHSTNLLTSHNILSVALCLIGFSPAMVLFTYCVSFM-------FVRVQSNRDFFSVVSMM 1164

  Fly  1217 VVVVMSS--ELFDTKDTADILGWIFRIFPHFSLAMSLNKVYTNTATRNACAKAGALPPILLCELV 1279
            |.||.:|  :|....::|             |:|..|:         ||......|.|::.|   
Zfish  1165 VCVVSASIVQLALVNESA-------------SMARLLH---------NALCFFSPLYPLMGC--- 1204

  Fly  1280 PQCCNLKPY--------FAWEEPGVLPETVYMAVTGVVFFLIIIVLEFRLI----------NELM 1326
            ..|..:..:        |.|       :.::::|.......|::::..|.:          |:.:
Zfish  1205 LNCITVATFVQSPHDDDFLW-------KNLFISVVAPYIQCILLLVSLRWLEIRYGGKTMKNDQL 1262

  Fly  1327 FKI-RQLISKPPPPPTEGQL-DDDVANERERILQMSSNELATKN--LVLDRVTKYY--------- 1378
            .:| .|..||....|.|... |:||..|:.|:.:..:.:...:.  :|:..:.|.|         
Zfish  1263 CRISSQAKSKAQRNPEENMSEDEDVQMEKARVKEAMTCQCCEEKPVVVVSNLRKQYKGKREGFSL 1327

  Fly  1379 --GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYV--QGLSLESNMNSI 1439
              .:.:|...:|.||::.|..||||.|||||:|...|::||...::|...:  .|...:...|.:
Zfish  1328 NKKRKVATKNISFCVRKGEVLGLLGPNGAGKSTIMHMLSGDTEATAGQILMGDYGTDFQPAENPL 1392

  Fly  1440 YKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGN 1504
             :.:|||||.:.|...:|.:|.|.|:..::|:::..|..:.:.:..:.....|:.||:...|.|.
Zfish  1393 -EHVGYCPQVNPLWPRITLQEHLEIYSAIKGLRQRDIPNIIKRVVSALELKDHLYKQSKNLSAGL 1456

  Fly  1505 KRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMV-CRIRDSGKSIVLTSHSMEECEALCTR 1568
            ||||..|::::|:|.::.||||:|||||.:::::|..: ...::..:..:||:|.|||.||:|.|
Zfish  1457 KRKLCFALSMLGNPQIVLLDEPSTGMDPKSKQRMWRAIRAAFKNKQRGALLTTHYMEEAEAVCDR 1521

  Fly  1569 LAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMSQRD 1633
            :||||:|:.:||||.||||.||.:|..|:|.:|..|..|:|..|                     
Zfish  1522 VAIMVSGQLRCIGSIQHLKGKFGRGYSLEINLREELTGLQQVAL--------------------- 1565

  Fly  1634 IDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVK-WSRIFGLMESNRDQLNVEDYSVSQTTLEE 1697
              ..||.::. :|:::.|:.:..::.:.||:..|| .::.|..:||.:...|.|:|:.||:|||:
Zfish  1566 --LHKEILKI-FPHAVRQDSFATMMVYKIPMEDVKSLAKSFAQLESAKQNFNFEEYNFSQSTLEQ 1627

  Fly  1698 IFLEFAKYQRED 1709
            :|:||||.|..:
Zfish  1628 VFMEFAKEQENE 1639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 43/188 (23%)
ABC2_membrane_3 <269..475 CDD:289468 48/214 (22%)
CcmA 538..843 CDD:224054 127/310 (41%)
ABC_subfamily_A 538..755 CDD:213230 99/222 (45%)
ABC2_membrane_3 913..1316 CDD:289468 75/445 (17%)
ABC_subfamily_A 1369..1587 CDD:213230 79/231 (34%)
drrA 1376..1702 CDD:130256 110/340 (32%)
abca5XP_005156458.1 ABC2_membrane_3 <165..395 CDD:289468 61/279 (22%)
CcmA 498..810 CDD:224054 127/313 (41%)
ABC_subfamily_A 500..723 CDD:213230 99/222 (45%)
ABC2_membrane_3 889..>1148 CDD:289468 52/311 (17%)
CcmA 1307..1634 CDD:224054 113/351 (32%)
ABC_subfamily_A 1309..1540 CDD:213230 79/231 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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