DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and ABCA5

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_001326002.1 Gene:ABCA5 / 823930 AraportID:AT3G47760 Length:936 Species:Arabidopsis thaliana


Alignment Length:879 Identity:172/879 - (19%)
Similarity:332/879 - (37%) Gaps:239/879 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 YNVKGN----PFTPHL---VIGWAPKRYGIFQAMMRRVQKQIEP-MTSVGFEDCEEMRESVIE-- 139
            |||.|.    .:|.:|   ::...|    ||     .||.:..| .|:..|    ..|:|.:|  
plant   170 YNVLGTTSKADYTNYLDPGILSDLP----IF-----NVQPRCTPDTTTFSF----PFRQSPLEFH 221

  Fly   140 ------NGLFAGLCFDGSPFVEDQVFEEDTLESY--SNIQPMLNYTILLPSELRMLDGDFRMANW 196
                  .||  .|..:.|..:.:::|     :.|  .|::.::|                .:|..
plant   222 KEVRCVEGL--NLWRNNSIEISNEIF-----KGYRQGNLEEIIN----------------EVAAA 263

  Fly   197 MTLYNDDPNTFVLT-RLNQPYEGGFVGYVREGFIRLQKSVSESFLVLTSHKSLPTIQ-------- 252
            ..|.:.|.|.|.:| ..|..|:|..... |..::|:.:||:     |.|:..|..:|        
plant   264 YDLMDTDINNFNVTIWYNSTYKGDLRDR-RVKYVRVPRSVN-----LVSNAYLEFLQGSGTKMLF 322

  Fly   253 --IRRFPITGREQDPL---MGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGN 312
              ::..|   :::..|   |.:|...:.|..:|..|||..|  ..:|.|||..:|..:....:|:
plant   323 DFVKEMP---KQETRLRLEMASLIGPIFFTWVILLLFPVML--TSLVYEKQQHLRIIMKMHGLGD 382

  Fly   313 ----LIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCAAVAFAI 373
                :|.:..:....::| :|..:|..:.:.:::.:.:....|..:|.|     |.| ..::.|.
plant   383 GPYWMITYAYFLAISIVY-IICLMIFGSAIGLKFFRFNDYSIQFIFYFL-----CIN-LQISIAF 440

  Fly   374 MVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLVIEFLIERES 438
            :|::.| :.:....|...|::..                         ..::...:.:||:|..|
plant   441 LVSSAF-SKIETASVAAYLYVFG-------------------------SGLLGAFLFQFLLEGLS 479

  Fly   439 IVHITWEDSGYRLNYDGGHITVTASSWIFMLNALVYCAIGLYVDMWRGGDRSGKK-------MKK 496
            .                      ..|||:::.  :|....||..::.....:.|:       ||.
plant   480 F----------------------PRSWIYIME--LYPGFSLYRGLYEFSQYAFKRNLNGSGGMKW 520

  Fly   497 PNTNASVQED-------------------------------------PYHERGDSFTHQGQ--AI 522
            .:.|.|..|:                                     |:.:....:..|.|  ||
plant   521 KDFNDSAMEEIFYIIIVEWFVALIAAYYTDKISSSGIDPFFFLKNQNPFKKSPSPYGLQRQVSAI 585

  Fly   523 GVNSTKIYEVEPSHRRFKLK----------------IKKL--CKRFATNDRPALNLFSWNVYENE 569
            .:...|:   :.:|.|.|::                :||:  | |.....:.|:...|..|...|
plant   586 AIEMEKL---DVAHERVKVEQLMLETSTGHAIVCDNLKKVYPC-RDGNPQKMAVRGLSLAVPSGE 646

  Fly   570 VTVLMGHNGCGKSTLLKILAGLVEPSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVID 634
            ...::|.||.||::.:.::.||::|:.|...:...:|..:.......:|:...||:|....|..:
plant   647 CFGMLGPNGAGKTSFINMMTGLMKPTSGAAFVHGLDICKDMDIVYTSIGVCPQHDLLWETLTGRE 711

  Fly   635 YLRFICRVKGLHNNIEIDGQSNYFLNVLQI--------------GGLKTKRIRTLTDRDLCLVSI 685
            :|.|..|:|.|..: ::|......|..:.:              ||:|.:            :|:
plant   712 HLLFYGRLKNLKGS-DLDQAVEESLKSVNLFRGGVADKPAGKYSGGMKRR------------LSV 763

  Fly   686 CCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRTIILVSNSPALAENIADRMAIMSNGE 750
            ..:.:|:..::.:|:..:.||..::..:|..|...|:...|||.::|...||.:.||:.|..:|.
plant   764 AISLIGSPKVVYMDEPSTGLDPASRRSLWTAIKRAKNHTAIILTTHSMEEAEFLCDRLGIFVDGR 828

  Fly   751 LKCTGTKPFLKNMYGHGYRLTCVKGKNYKRD-ELFGMMNSYMPNMSIERDIGYKVTFVLENKFED 814
            |:|.|....||..||..|.||......:::| |:  ::....||......|.....|.:. |.|.
plant   829 LQCVGNPKELKARYGGSYVLTMTTPSEHEKDVEM--LVQDVSPNAKKIYHIAGTQKFEIP-KEEV 890

  Fly   815 QFPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLR 848
            :...:...:|:......|.::.:.||::|::|::
plant   891 RISEVFQAVEKAKDNFRVFAWGLADTTLEDVFIK 924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 37/223 (17%)
CcmA 541..848 CDD:224054 75/339 (22%)
ABC_subfamily_A 541..761 CDD:213230 54/251 (22%)
ABC2_membrane_3 911..>1189 CDD:289468
ABC2_membrane <1080..>1188 CDD:304374
ABC_subfamily_A 1370..1577 CDD:213230
PRK14255 1371..1586 CDD:172743
ABCA5NP_001326002.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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