DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and Abca2

DIOPT Version :10

Sequence 1:NP_608444.2 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_063140674.1 Gene:Abca2 / 79248 RGDID:620238 Length:2442 Species:Rattus norvegicus


Alignment Length:1964 Identity:404/1964 - (20%)
Similarity:719/1964 - (36%) Gaps:562/1964 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 GFEDCEEMRESVIENGL----------FAGLCF----DGSPFVEDQVFEEDTLESYSNIQPMLNY 176
            ||.|    .||::...|          ||.:.|    |||                  :.|.::|
  Rat   589 GFPD----EESIVNYTLNQAYQDNVTVFASVIFQTRKDGS------------------LPPHVHY 631

  Fly   177 TILLPSELRMLDGDFRMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFL- 240
            .|...|.......:.|.|.|    ...|||           ||.. |...||:.:|..:..:.: 
  Rat   632 KIRQNSSFTEKTNEIRRAYW----RPGPNT-----------GGRF-YFLYGFVWIQDMIERAIIN 680

  Fly   241 VLTSHKSL-PTIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQF 304
            ....|..: |...::.||.....:|..:..:.:.||..::|.:::...:.:..:|:||:.::::.
  Rat   681 TFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEV 745

  Fly   305 LINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHG-VLTQTPWYILILVLFCYNCAA 368
            :..|.:.|.:|:|:|::.|.:...||...:.|:||      :| ||..:...|:.|.|..|..|.
  Rat   746 MKTMGLNNAVHWVAWFITGFVQLSISVTALTAILK------YGQVLMHSHVLIIWLFLAVYAVAT 804

  Fly   369 VAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSY----ALPNVVATLV 429
            :.|..:|:..:..|..|.....|::.:||||...::...|        |::    |....:|:|:
  Rat   805 IMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREE--------VAHDKITAFEKCIASLM 861

  Fly   430 IEFLIERESIVHITWEDSGYRLNY--------DGGHITVTASSWIFMLNALVYCAIGLYVD---- 482
            ........|.....:|.:|..:.:        :|....:..:..:.|::.:||..:..|::    
  Rat   862 STTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHP 926

  Fly   483 ----------------MWRGGDRSGKKMKKPNTNASVQEDPY-HERGDSFTHQGQAIGVNS---- 526
                            .|.|..|         |.......|: |....|...:.||..:.|    
  Rat   927 GMYGLPRPWYFPLQKSYWLGSGR---------TETWEWSWPWAHAPRLSVMEEDQACAMESRHFE 982

  Fly   527 -TKIYEVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAG 590
             |:..|.||:|....:.:.||.|.:..:.:.|||..|.|:|||:|...:||||.||:|.:.||.|
  Rat   983 ETRGMEEEPTHLPLVVCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTG 1047

  Fly   591 LVEPSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKGLHNNIEIDGQS 655
            |..|:.|:..|..|:|:||.......||:...|::|....||.::|.|..|:|.:... ||..:.
  Rat  1048 LFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMAQE-EIRKEM 1111

  Fly   656 NYFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEE 720
            :..:..|::...:...::||:......:|:..||||.|..|::|:..:.:|...:..:|:||.:.
  Rat  1112 DKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKY 1176

  Fly   721 KSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVK----------- 774
            |..|||:|.::....|:.:.||:||:|:|:|||.|:..|||..||.|||||.||           
  Rat  1177 KPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAEPGTSQEP 1241

  Fly   775 -------GK----NYKRDELFGMMNSYMPNMSIERDIGYKVTFVLENKF--EDQFPMLIDDLEEN 826
                   |:    |....::...:..::.:..:..|...:::::|.::.  :..|..|...||.:
  Rat  1242 GMASSPSGRPQLSNCSEMQVSQFIRKHVASSLLVSDTSTELSYILPSEAVKKGAFERLFQQLEHS 1306

  Fly   827 MQQLGVVSFRIRDTSMEEIFLRFGCED----NDQSGAFQSHENA--------------------- 866
            :..|.:.||.:.||::||:||:...||    |.::...:|.::|                     
  Rat  1307 LDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSEADVKESRKDALPGAEGLTAVESQAGNLARCS 1371

  Fly   867 --------------------------------------------QVLLEE-YYSTLAEANEKGRR 886
                                                        .|.|:| ....||...:..|:
  Rat  1372 ELAQSQASLQSASSVGSARGDEGAGYTDGYGDYRPLFDNLQDPDSVSLQEAEMEALARVGQGSRK 1436

  Fly   887 -TGW--KLFFLHGRAVIYKRWIAAHRHWIVLIFEVLAMAL---VAVCTFSSIFIYGKNYELEPLT 945
             .||  |:...||  ::.||:..|.|:...|..::|..|.   ||:....|:...|   :|.||.
  Rat  1437 LEGWWLKMRQFHG--LLVKRFHCARRNSKALCSQILLPAFFVCVAMTVALSVPEIG---DLPPLV 1496

  Fly   946 FNLSQLHTVDA----FVELFSEEE---------DVKDMHAYYT---------------------- 975
            .:.||.|....    |:...:||.         |........|                      
  Rat  1497 LSPSQYHNYTQPRGNFIPYANEERREYRLRLSPDASPQQLVSTFRLPSGVGATCVLKSPANGSLG 1561

  Fly   976 ------------------------------------------------------ELLYWYDA--- 983
                                                                  .||.|..:   
  Rat  1562 PMLNLSSGESRLLAARFFDSMCLESFTQGLPLSNFVPPPPSPAPSDSPLSPDEDSLLAWNTSLPP 1626

  Fly   984 ---------------------------------------------HVAT------LTKNRHNAYA 997
                                                         .|.|      :|.:..:.|.
  Rat  1627 TAGPETWTWAPSLPRLVHEPVRCTCSAQGTGFSCPSSVGGHPPQMRVVTGDILTDITGHNVSEYL 1691

  Fly   998 LLTQNQFTAHVNSRYIFGA-TFD-----------------------QKIVTAWFNNIPLHSAPYA 1038
            |.|.::|..|   ||  || ||.                       :::....:||...||.|..
  Rat  1692 LFTSDRFRLH---RY--GAITFGNIQKSIPAPIGTRTPLMVRKIAVRRVAQVLYNNKGYHSMPTY 1751

  Fly  1039 LNVVHNAVARHLFDEEA------TIDVTLAPLPFRTAINTFPPSSHTFGGCLAFGICFVLTFIWP 1097
            ||.::||:.|....:..      .|.||..|:...:|..:...........:|..|...::|:..
  Rat  1752 LNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGTDVVIAIFIIVAMSFVPA 1816

  Fly  1098 AFAIYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVALYENPNHD----- 1157
            :|.::::.|:.:..|..||::|.....||....::|:|..|:...|.::::.:::.|.:.     
  Rat  1817 SFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPAYTSPTNF 1881

  Fly  1158 ------VMLYGYISVTLML--GGFWVILLAYLMASLCRNPCYGFLWLCGIN-SIGLVCFSQFYRT 1213
                  .:|||: |:|.::  ..||..:           |...:::|..|| .||:..       
  Rat  1882 PAVLSLFLLYGW-SITPIMYPASFWFEV-----------PSSAYVFLIVINLFIGITA------- 1927

  Fly  1214 HPESMLLEPTFMAMYTVATVICKLFMIYEFKLICMDPVVNFTSVEVFKCNSIPNCCIKSNYGTF- 1277
                           ||||.:.:||                   |..|...:.|..:||.:..| 
  Rat  1928 ---------------TVATFLLQLF-------------------EHDKDLKVVNSYLKSCFLIFP 1958

  Fly  1278 TAGIYHDLVILTLLDIILLACLFVSEYHSILGFAD------------------------------ 1312
            ...:.|.|:.:...:       :::||::.:|..|                              
  Rat  1959 NYNLGHGLMEMAYNE-------YINEYYAKIGQFDKMKSPFEWDIVTRGLVAMTVEGFVGFFLTI 2016

  Fly  1313 -C---------RLDTRTNESPD----SNQESRAFPGILSNDTAALVDKEHTSRLNEEERSKYAAV 1363
             |         ||...|....|    :::..|...|...||   :|..|:.:::       |.:.
  Rat  2017 MCQYNFLRQPQRLPVSTKPVEDDVDVASERQRVLRGDADND---MVKIENLTKV-------YKSR 2071

  Fly  1364 GIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYSVNTH 1428
            .||.:....|      |...:...||..:.|.|.:|||:..|::..:.....|:.:::.:||...
  Rat  2072 KIGRILAVDR------LCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKD 2130

  Fly  1429 RVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRSVRMC 1493
            .:|..:.:|||||.|:|..|.|.||.|.::..|:|...:...::....|..:.||.|.::.....
  Rat  2131 LLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVRWALEKLELTKCADKPAGSY 2195

  Fly  1494 TTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAERL 1558
            :.|..|:|..|.|::|.|..|.:|....|:||..:|.:..:...:...|.|.:.|..:..:.|.:
  Rat  2196 SGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEAV 2260

  Fly  1559 SLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKKFS 1623
            ..|..:::.|:|..:..:......:..||.:.||.|...|.                    |...
  Rat  2261 CTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNV--------------------KDVV 2305

  Fly  1624 AFMEIKFPDAVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNIEDYFITR----NMLVGF- 1683
            .|....||:|:|.......:.:.|.....:.:::|..:......:.||||.:::    |:.|.| 
  Rat  2306 RFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEHVVGVLGIEDYSVSQTTLDNVFVNFA 2370

  Fly  1684 --QIFTYDQHQDNP 1695
              |....:|.:..|
  Rat  2371 KKQSDNVEQQEAEP 2384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_608444.2 rim_protein <223..1689 CDD:130324 378/1845 (20%)
ABC_subfamily_A 541..761 CDD:213230 74/219 (34%)
Abca2XP_063140674.1 None

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