DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and Abca6

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_671751.2 Gene:Abca6 / 76184 MGIID:1923434 Length:1624 Species:Mus musculus


Alignment Length:1827 Identity:378/1827 - (20%)
Similarity:716/1827 - (39%) Gaps:406/1827 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RSYIRKFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNHRSDTVYDPIDLDRSW 68
            |:.:.|.||..|:..:..|......::|.|...||:.:|                          
Mouse    13 RALLHKILLKKWRRKRESLLEWSIPIIIGLHMGLFSYLA-------------------------- 51

  Fly    69 MQMVEKLEKARQVADTYN-VKGNPFTPHLVIGWAPKRYGIFQAMMRRVQKQIEPMTS-------- 124
             :.::.||...|...:.| ..|:    .||:.:.|         :..:.:||...|:        
Mouse    52 -RNIQVLEVPPQDLGSLNEFNGS----SLVVVYTP---------ISNITQQIMNKTTFAPTMKGT 102

  Fly   125 --VGFEDCEEMRESVIENGLFA-GLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSELRM 186
              :|....|::.|.::.|...| |:.|:.|     ..::...|..|.|  |.|...:|...    
Mouse   103 RIIGVPSIEDLDEVLLHNIPDALGVIFNDS-----FSYQLKVLRMYGN--PFLKEDLLAHC---- 156

  Fly   187 LDGDFRMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFL-VLTSHK---- 246
                     |      |.::.....|::        |...||:.||.:::...: |.|:|.    
Mouse   157 ---------W------DTHSQAFCSLSK--------YWERGFVALQTAINAGIIEVTTNHSVMEE 198

  Fly   247 --SLPTIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQL-FVWQVVSEKQSQVRQFLINM 308
              |:..|.::..|...|:..      :|.: ||:.....|.:.: |....|::::.|.::.:..|
Mouse   199 LMSIDGINMKTLPFIPRDLS------DYEI-FILFCLLYFSSFIYFASSNVTKERKQCKEVMKVM 256

  Fly   309 NIGNLIHFVSWYLKGLIYE---MISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCAAVA 370
            .:.:...::||   ||||.   .|.|:.||.::     ....::..|.:.::..:.|.|..:.:|
Mouse   257 GLQDSAFWLSW---GLIYVGFIFIISIFIAIII-----TSTQIIMMTGFLVIFTLFFLYGLSLIA 313

  Fly   371 FAIMVAAFFRNALNA---VRVLTILWIMSYVPTFILSNNLEGNIHALR--YVSYALPNVVATLVI 430
            ...::|...:.|:..   |...|:.|  ..|...:|...|..::..:.  :..:|..:.:|.::.
Mouse   314 VTFLMAVLLQKAVLTNLIVLFFTLFW--GCVGFTVLHKELPPSLEWVLSIFSPFAFTSGMAKVIF 376

  Fly   431 EFLIERESIVHITWEDSGYRLN------YDGGHITVTASSWIFMLNALVYCAIGLYVD---MWRG 486
            :                .|.||      ..|....:.|..:|...::|:|..:.||.|   ::..
Mouse   377 Q----------------DYNLNGVVFPDPSGESYVMIAVFFILAFDSLLYLVLALYFDKILLYGA 425

  Fly   487 GDRSGKKM---------KKPNTNASVQ--------EDPYHERGDSFTHQG-QAIGVNSTKIYEVE 533
            ..||....         |..|.|..::        .|.|.|..|. .:|| :||.:.:.|     
Mouse   426 EHRSAPLFFLNPTSCFRKTANRNKVIERDLDPELPSDEYFEPVDP-EYQGKEAIRIRNIK----- 484

  Fly   534 PSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPSRGT 598
               :.:|.|..|:         .||.....::||:::|.::||:|.|||:||.||:||..|:.|:
Mouse   485 ---KEYKGKSGKV---------KALKGLFLDIYESQITAILGHSGAGKSSLLNILSGLYVPTAGS 537

  Fly   599 VMISSHNI--QTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKG-LHNNIEIDGQSNYFLN 660
            |.:.:.|:  ..:.|.....:|:...|::.....||.:.|....::|| |..::|.:.|.  .|:
Mouse   538 VTVYNKNLSDMQDLKEIRKAIGVCPQHNVQFDALTVKENLTLFAKIKGILPQDVEQEVQQ--ILS 600

  Fly   661 VLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRT 725
            .|.:..::......|::.....::...|.||:..|:|:|:....||..::..:|..:.|.::...
Mouse   601 ELDMQNIRDDLAEHLSEGQKRKLTFGIATVGDPQILLLDEPTVGLDPFSRQRIWGFLKERRADHV 665

  Fly   726 IILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVKGKNYKRDELFGMMNSY 790
            |:..:.....|:.:|||..:::||.|||||:..|||..:|.||.|:....:....:.|...:|.:
Mouse   666 ILFSTQFMDEADILADRKVLIANGALKCTGSSVFLKRKWGLGYHLSLFMDETCDSERLTSFINHH 730

  Fly   791 MPNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLRFGCEDND 855
            :|...::.....|:.::|..:...:||....||::...| |::|:.:..:::.::||....|.:.
Mouse   731 IPYAKLKAKTKEKLVYILPLERTSEFPEFFSDLDKYSGQ-GLMSYEVSMSTLNDVFLNLEGEPST 794

  Fly   856 QSGAFQSHENA---QVL--LEEYYSTLAEANEK-GRRTGWKL-FFLHGRAVIYKRWIAAHRHWIV 913
            :.. |:..|.|   :.|  :|..|.:|::..|. ...:.|:: .....|..|.|  :...|...:
Mouse   795 KQD-FEKRETATDSESLNDMEVAYPSLSQVQETVSTMSLWRMQVCAIARLRILK--LKRERKAFL 856

  Fly   914 LIFEVLAMALVAVCT--FSSIFIYGKN--------YELEP------LTFNLSQLHTVDAFVELF- 961
            :|..:|.:||:.:..  .::..:..||        |.|.|      |..:|..::..::.:|.| 
Mouse   857 IILLLLGIALLPLVIEYVANALLEVKNNWEFKTDLYFLSPGQLPQGLRTSLLVINNTESNIEDFL 921

  Fly   962 ---------SEEEDVKDMHAYYTELLYWYDAHVATLTKNRHNAYALLTQNQFTAHVNSRYIFGAT 1017
                     .|.:|.::.:|  |..|.:   :.|.:...|...|      :|:|..|::      
Mouse   922 QSLKHQNIVLEVDDFENRNA--TNSLSY---NGAIIVSGRQKDY------RFSAVCNTK------ 969

  Fly  1018 FDQKIVTAWFNNIPLHSAPYALNVVHNAVARHLFDEEATI----DVTLAPLPFRTAINTFPPSSH 1078
                         .||..|..:||:.|.:. |:.:....|    |:.   .||...:.|....: 
Mouse   970 -------------RLHCFPILMNVISNGIL-HMLNHTQYIRIKEDIF---SPFIVLVWTGIQET- 1016

  Fly  1079 TFGGCLAFGICFVLTFIWPAFAIYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCAC 1143
                || |.:| |:..:.|..|:..:::.......|.:::|:...:||              |..
Mouse  1017 ----CL-FILC-VICSLSPHIAMSSVSDYKKKADSQLWISGLYPSAYW--------------CGQ 1061

  Fly  1144 VVVMVALYENPNHDVMLYGYIS-------------------VTLMLG-----GFWVILLAYLMAS 1184
            .||.::|:..    ::|..|.:                   :.|.||     .|...:::::...
Mouse  1062 AVVDISLFSG----MLLTSYFTSYTSKLLNIDMTSEIVFSVIVLALGCAASLVFLTYVISFVFGK 1122

  Fly  1185 LCRNPCYGFLWLCGINSIGLVCFSQFYRTHPESMLLEPTFMAMYTVATVICKLFMI--------- 1240
            ..:|   ..||        .:||........|.:...|...|:...||::...|.:         
Mouse  1123 RKKN---STLW--------SICFLLVIAITFEKVANGPFNEALVISATMLVPSFALNGLLVVLEM 1176

  Fly  1241 --YEFKLICMDPVVNFTSVEVFKCNSIPNCCIKSNYGTFTAGIYHDLVILTLLDIILLACL---- 1299
              |::.:...:.....::|::..| .||                   .|.|||.|.:|.||    
Mouse  1177 RAYQYYIEFEEIKHGLSAVDLLLC-LIP-------------------YIHTLLFIFVLRCLELKY 1221

  Fly  1300 --FVSEYHSILGFADCRLDTRTN-ESPDSNQESRAFPGILSNDTAALVDKEHTSRLNEEE----- 1356
              .|.....|...|...|..:.| |.|....|:.....:.::|..:      |..|:|:.     
Mouse  1222 GKNVVRRDPIFRIAPQSLKAQPNPEEPIDEDENVQAERLRTSDALS------TPNLDEKPVIIAS 1280

  Fly  1357 --RSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVNETKMNAGQLW 1419
              ..:||.......|:..||..:|::.|.:.|.|.|.:.|.:.:||::.::::...||..|||:.
Mouse  1281 CLHKEYAGQKKHCCSRRTRNMAVRNVSFCVNKGEILGLLGPDGAGKSSSIRMIAGITKPTAGQVE 1345

  Fly  1420 IHDYSVNT-HRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRELSEALLRLVG-- 1481
            :...|... |:.......|||||::.|....|.:|.|.::|.::|.|.   .:...|:.|||.  
Mouse  1346 LKRLSSAVGHQGDSRAEFGYCPQENGLWPNLTVKEHLELYAAVKGLRK---EDAVVAISRLVNAL 1407

  Fly  1482 -LTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQAM---- 1541
             |....|..|:....|..|:|.|..::||:..::.:|....|||.:||.   .:...:||:    
Mouse  1408 KLHDQLNVQVQNLVAGATRKLCFVLSILGNSPVLILDEPSTGLDVSGKH---QVWQAIQAVVKDN 1469

  Fly  1542 GSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKRKVNPNVSMSRA 1606
            ....|.:.....:||.|..|..:::.|:|..|.|:......:...|.||:|.| .|:....:.| 
Mouse  1470 EKGVLLSTHDLAEAEALCDRAAIMVSGRLRCIGPIQHLKRKFGQDYVLELRVK-DVSQEPLVHR- 1532

  Fly  1607 TWNLINHFPMSPNK-KFSAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNI 1670
              .::..||.:..: :..:.:..|.|           :..|.||     |:.|..|.......::
Mouse  1533 --EILKLFPQAARQDRCFSLLTYKLP-----------VTDVHPL-----SQAFHKLEAVKHGFDL 1579

  Fly  1671 EDYFITR 1677
            |||.:::
Mouse  1580 EDYSLSQ 1586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 40/231 (17%)
CcmA 541..848 CDD:224054 79/309 (26%)
ABC_subfamily_A 541..761 CDD:213230 60/222 (27%)
ABC2_membrane_3 911..>1189 CDD:289468 57/331 (17%)
ABC2_membrane <1080..>1188 CDD:304374 21/131 (16%)
ABC_subfamily_A 1370..1577 CDD:213230 59/214 (28%)
PRK14255 1371..1586 CDD:172743 59/222 (27%)
Abca6NP_671751.2 rim_protein <169..1600 CDD:130324 339/1605 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838445
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.750

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