DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and abca1a

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_001296394.1 Gene:abca1a / 558924 ZFINID:ZDB-GENE-031006-12 Length:2268 Species:Danio rerio


Alignment Length:2041 Identity:406/2041 - (19%)
Similarity:772/2041 - (37%) Gaps:539/2041 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNHRSDTVYDPIDLDRSWMQMVEKLEK 77
            |.|:..|     ||.:..||..|.    .....|....||.....:....||...|.:|..|:..
Zfish   375 MIWRALK-----PLLMGKILYTPD----TPATQRIIHEVNKTFQELGVLRDLGGMWEEMRPKIWN 430

  Fly    78 ARQVADTYNVKGNPFTPHLVIGWAPKRYGIFQAMMRRVQKQIEPMTSVGFEDCEEMRESVIENGL 142
            ..:     |.:.......|:...|..|:  |.|.:...:.::|.::....:..|:.|.       
Zfish   431 FME-----NSEEMDLVRTLLQNNASARF--FNAKLSGTEWRVEDVSRFLSKSSEDTRP------- 481

  Fly   143 FAGLCFDGSPFVEDQVFEE-----DTLESY------SNIQPMLNYTILLPSELRMLDGDFRMANW 196
                  .|:.:...:||.|     .|:..:      ..::|:.|...|:...:|:|| |.:.  |
Zfish   482 ------HGTAYTWREVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMRLLD-DRKF--W 537

  Fly   197 MTLYNDD--PNTFVL---------------TRLNQ-------------PYEGGFVGYVREGFIRL 231
            ..:...|  .||..|               .|.|:             |:|.  :.|:..||..|
Zfish   538 AGIVFPDMQSNTSDLPLNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFED--LRYIWGGFTYL 600

  Fly   232 QKSVSESFL-VLTSHKSLPTIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVS 295
            |..:....: .||..|....:.|::.|......|..:..::..||..:.:.:::...:.:..||.
Zfish   601 QDVIEHGIIRALTGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIKGVVY 665

  Fly   296 EKQSQVRQFLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILV 360
            ||::::::.:..|.:.|.|.::||::..||..:||:.::..:||:     ..:|..:...::.|.
Zfish   666 EKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKM-----GNLLPYSDPGVIYLF 725

  Fly   361 LFCYNCAAVAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVV 425
            |..:....:....:::..|..|..|.....|::...|:| ::|.      :....||.:....||
Zfish   726 LSSFAVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLP-YVLC------VAWQNYVGFGAKIVV 783

  Fly   426 ATL--------VIEFLIERESIVHITW---------EDSGYRLNYDGGHITVTASSWIFMLNALV 473
            :.|        ...|.:..|..|.|.|         ||| |.|         |.|..:.:.::::
Zfish   784 SLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDS-YNL---------TTSICLMLFDSVL 838

  Fly   474 YCAIGLYVD--------------------MWRGGDRSG-----KKMKKPNTNA-SVQEDPYHERG 512
            |..:..|::                    .| .|::.|     ...:|.|..| .::|:|.|   
Zfish   839 YAVMTWYIEAVFPGQYGIPRPWYFPFTKSYW-CGEKCGWTTSVPSNRKENAEAVCIEEEPAH--- 899

  Fly   513 DSFTHQGQAIGVNSTKIYEVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHN 577
                               ::|.     :.|:.|.|.: :|.:.|::..:...||.::|..:|||
Zfish   900 -------------------IDPG-----VYIENLMKIY-SNGKVAVDGLTLGFYEGQITSFLGHN 939

  Fly   578 GCGKSTLLKILAGLVEPSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRV 642
            |.||:|.:.||.||..|:.||..|...:|:|:..|....||:...|::|.:..||.:::.|..|:
Zfish   940 GAGKTTTMSILTGLFPPTSGTAYIQGKDIRTDLNAIRQNLGVCPQHNVLFSMLTVEEHIWFYARL 1004

  Fly   643 KGLHNNIEIDGQSNYFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDK 707
            |||... ::..:....:..|.:...:|.|...|:......:|:..||||.|.::::|:..:.:|.
Zfish  1005 KGLSAE-KVKSEMEQIVMDLGLPHKRTSRSNQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDP 1068

  Fly   708 RTQSLVWNLINEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTC 772
            ..:..:|:|:.:.:..|||||.::....|:.:.||:||:|:|:|.|.|:..|||...|.||.||.
Zfish  1069 YARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTL 1133

  Fly   773 VKGKNY---------------------KRDE--------------------------LFGMMNSY 790
            || |::                     |:|:                          :..::..:
Zfish  1134 VK-KDFDLSASSCRTSSSTVSYSKGSLKKDDSVSESSSDAGLGSDHESETTTIDISLISNVIFKH 1197

  Fly   791 MPNMSIERDIGYKVTFVL--ENKFEDQFPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLRF---- 849
            :|...:..|:|:::|:||  |:..:..|..|..::::.:..|.:.|:.|.||::|||||:.    
Zfish  1198 VPTARLVEDLGHEITYVLPYESAKDGAFVELFHEIDDRLTDLSISSYGISDTTLEEIFLKVAEDC 1262

  Fly   850 GCEDNDQSGAFQSHENAQVLLEEYYSTL------------AEANEKGRRT--------------- 887
            |.:.....|...:..|.:....::.|.|            :|.:.:.|.|               
Zfish  1263 GVDAETSDGTLPARRNRRHAFGDHQSCLKPFTEDDFDFNDSEGDPESRETDWLDGADGKGSYQVK 1327

  Fly   888 GWKLFFLHGRAVIYKRWIAAHRH---------------WIVLIFEVL------------------ 919
            ||.|......|:::||.:.|.|.               .|.|:|.::                  
Zfish  1328 GWSLKRQQFVALLWKRLLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLALEPSMYE 1392

  Fly   920 -------------------------AMALVAVCT-------------------------FSSIFI 934
                                     :.|....||                         ..:||:
Zfish  1393 EQFTFISNDAPEDRHTNRLLDALKDSPAYTDQCTDGKNTASRSCPIKDGEWLVPEVTESIEAIFL 1457

  Fly   935 YGKNYELE---PL----------------------------------TFNLSQLHTVDAFVELFS 962
            .| |:.:|   ||                                  ..|||..:..|..|:.::
Zfish  1458 NG-NWSMENPSPLCECSCEGRKKMLPECPPGAGGLPPPQIKVTHDETLQNLSGRNISDYLVKTYA 1521

  Fly   963 E--EEDVKDMHAYYTELLYWYDAHVATLTKNRHNAYALLTQNQFT---AHVNSRYIF--GATFDQ 1020
            :  .:.:|: ..:..|..|      ...:....|..||...::.|   :|:.||:..  |...|:
Zfish  1522 QIIGKSLKN-KLWVNEFRY------GGFSLGARNTQALPPGDELTDAISHIRSRFSLESGTAADR 1579

  Fly  1021 KI---------------VTAWFNNIPLHSAPYALNVVHNAVARHLFDEEATIDVTLAPLP----- 1065
            .:               |..||||...||....|||::|||.|             |.||     
Zfish  1580 FLGSLSTFIRGLDTNNNVKIWFNNKGWHSIGSFLNVMNNAVLR-------------ANLPPGLDR 1631

  Fly  1066 FRTAINTF--------PPSSH----TFGGCLAFGIC--FVLTFIWPAFAIYMITERGSLLKKQQF 1116
            .:..||.|        ...||    |....:...||  |.::|:..:|.:::|.||.:..|..||
Zfish  1632 SKFGINAFNHPLNLTKEQLSHVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQF 1696

  Fly  1117 LAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVALYENPNHDVMLYGYISVT--------LMLGGF 1173
            ::||:...||....::|:...::....|:::...::..       .|:|.|        |:|.|:
Zfish  1697 ISGVQPFLYWLANFVWDMCNYIVPATLVIIIFVCFQQE-------AYVSSTNLPVLALLLLLYGW 1754

  Fly  1174 WVILLAYLMASLCRNPCYGFLWLCGIN-SIGLVCFSQFYRTHPESMLLEPTFMAMYTVATVICKL 1237
            .:..|.|..:...:.|...::.|..:| .||:                      ..:|:|.:.:|
Zfish  1755 SITPLMYPASFFFKIPSTAYVVLTSVNILIGI----------------------NGSVSTFVLEL 1797

  Fly  1238 FMIYE--------------FKLICMDPVVNFTSVEVFKCNSIPNCCIKSNYGTFTAGIYHDLVIL 1288
            |...|              |...|:...:    :::.|..::.:...:.....|.:.:..|:|..
Zfish  1798 FGSNEIGGINDILKNVFLIFPHFCLGRGL----IDMVKNQAMADALERFGENRFRSPLAWDMVGK 1858

  Fly  1289 TLLDIILLACLFVSEYHSILGFADC----RLDTRT----NESPD-SNQESRAFPGILSNDTAALV 1344
            .|..:.:...:|.| ...::.:..|    .|.|:.    .|..| :.:..|...|  ...|..|.
Zfish  1859 NLFAMAIEGVIFFS-ITVLIQYRFCIKARSLSTKLKPIGEEDEDVARERQRILGG--GGQTDILE 1920

  Fly  1345 DKEHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVN 1409
            .::.|.....:::.....:.:||                 ...||..:.|.|.:|||:..|::..
Zfish  1921 LRQLTKVYKRKQKPAVDRLCVGI-----------------PPGECFGLLGVNGAGKTSTFKMLTG 1968

  Fly  1410 ETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRELSE 1474
            ::.:.:|:.::...||.|...:.::.:|||||.|::....|.||.|..:|:|:|...:...::::
Zfish  1969 DSVVTSGEAYLAGNSVLTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCKVAD 2033

  Fly  1475 ALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQ 1539
            ..:|.:||....:::....:.|.:|:|..|.|::|.|.::.:|....|:||..:|.:.....::.
Zfish  2034 WGIRKLGLMKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSII 2098

  Fly  1540 AMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKRKVNPNVSMS 1604
            ..|.|.:.|..:..:.|.|..|..:::.|:...:..:......:..||.:.:|. ...:|.:   
Zfish  2099 KEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNKFGDGYTIILRV-AGADPRL--- 2159

  Fly  1605 RATWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMN 1669
                           :....|:|.:.|.:.|..:..:.:.:.|....|:.:.||..|.|:..:::
Zfish  2160 ---------------EPVMEFIERELPGSTLKEKHRNMLQYQLSSSLTSLARIFNILSKNKEQLH 2209

  Fly  1670 IEDYFITRNML-VGFQIFTYDQHQDN 1694
            ||||.:::..| ..|..|..||..::
Zfish  2210 IEDYSVSQTTLDQVFVNFAKDQSDED 2235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 46/233 (20%)
CcmA 541..848 CDD:224054 97/355 (27%)
ABC_subfamily_A 541..761 CDD:213230 67/219 (31%)
ABC2_membrane_3 911..>1189 CDD:289468 78/431 (18%)
ABC2_membrane <1080..>1188 CDD:304374 25/117 (21%)
ABC_subfamily_A 1370..1577 CDD:213230 47/206 (23%)
PRK14255 1371..1586 CDD:172743 47/214 (22%)
abca1aNP_001296394.1 rim_protein 1..2233 CDD:130324 406/2037 (20%)
ABC_subfamily_A 904..1122 CDD:213230 67/219 (31%)
ABC_subfamily_A 1919..2139 CDD:213230 51/236 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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