DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and abca12

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_686632.6 Gene:abca12 / 558335 ZFINID:ZDB-GENE-030131-9790 Length:5913 Species:Danio rerio


Alignment Length:1774 Identity:381/1774 - (21%)
Similarity:718/1774 - (40%) Gaps:387/1774 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 GFEDCEEM---RESVIEN-GLFAGLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSELRM 186
            ||...:|:   .|.:.:| .|:|.:.|            :...|:.|::.|.::|||.:..|..|
Zfish  4259 GFNSTDELDKQAEKLAQNRELYASIIF------------KLPKENSSSLPPNIDYTIRMNIENVM 4311

  Fly   187 LDGDFRMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFLVLTSHKSL--P 249
            .....|...|:      .:.::.....|.|.        .||:.||:|:..:.:.:.:..::  |
Zfish  4312 RTDRARNPFWV------KDAYISATRTQRYS--------RGFVYLQESIERAIIEMQTGNAMDGP 4362

  Fly   250 TIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLI 314
            .:|::.||.....:|..:.::.:..|..::|.::.....||.::|.|::.::.:::..|.:..:.
Zfish  4363 AVQMQAFPYPCYYKDEYLNSIAFAFPMALMISWVLFIAHFVKKLVHERELRLHEYMKMMGVNPIS 4427

  Fly   315 HFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCAAVAFAIMVAAFF 379
            ||.:|.::...:.:::.:|:..:||.     .|:|.::..::|.|.|..|..:.:|.:.:|::||
Zfish  4428 HFFAWLIESGAFLLVTVIILTIILKA-----GGILPRSDGFVLFLYLCDYGFSVLAVSFLVSSFF 4487

  Fly   380 RNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLVIE-FLIERESIVHIT 443
            .....|....::::::|:.| ||:..:||.|:      |:::.:.::..... |....:.|....
Zfish  4488 DKTNIAGLSGSLIYVISFFP-FIVLIHLEDNL------SFSVKSALSLFSPTCFSYASQYIARYE 4545

  Fly   444 WEDSGYRLNYDGGHITVTASS--------WIFMLNALVYCAIGLYV------------------- 481
            .::.|  :.:...:|:..|..        |:.::::|||..||:|:                   
Zfish  4546 KQEEG--IQWSNMYISPLAGDTSSFGWLCWLLLIDSLVYFIIGIYIRMVFPGKYGIAVPWYFPVT 4608

  Fly   482 -----DMWRGGDRSGKKM-----------KKPNTNASVQEDPYHERGDSFTHQGQAIGVN---ST 527
                 ||:....::.||:           .:.:.|.|..:.....:|:. ...|..:||:   .|
Zfish  4609 KSFWTDMFSCCSKTPKKIGRGLLFTNMMQDQSSMNKSKGKGSLVAKGEE-DFSGLPVGVSLYGLT 4672

  Fly   528 KIYEVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLV 592
            |.|.                ||.|.::   |||   :.||..||.|:||||.||:|.:.:|.||.
Zfish  4673 KTYG----------------KRNAVDN---LNL---SFYEGHVTSLLGHNGAGKTTTMSLLTGLF 4715

  Fly   593 EPSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKGLH-NNIEIDGQSN 656
            .|:.||:.:...::|........|:|:...:|:|....|..::|....::|..| ...|:..|.:
Zfish  4716 APTVGTIEVYGMDMQMFIDDVRKEMGVCMQYDVLFDHLTTKEHLLLYAQIKAPHWTKQEVKEQVH 4780

  Fly   657 YFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEK 721
            ..|....:...:.||:.||:......:||..||:|.|.::::|:..:.:|..::..:|::|.:.|
Zfish  4781 KILMETDMHAHRHKRVGTLSGGMKRKLSISIAFIGGSRLVVLDEPTTGVDPCSRRSIWDIIIQHK 4845

  Fly   722 SKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVK-------GKNYK 779
            .:|||||.::....||.::||:|.:..|.|||.|:..:||:....||.||..|       .:.:.
Zfish  4846 QERTIILSTHHLDEAEVLSDRIAFLERGGLKCCGSPFYLKDKLAKGYNLTLTKKVETADSKEKFD 4910

  Fly   780 RDELFGMMNSYMPN-MSIERDIGYKV----TFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIRD 839
            .::|...::|::|: ...:|::|..|    .:..:|..|  :..|::.|::|:.:|.:..:.|.|
Zfish  4911 YEKLRDFIHSHLPDARQKDREMGDLVYALPPYTPQNASE--YHSLLNSLDQNLDKLHLGCYGISD 4973

  Fly   840 TSMEEIFLRFGCEDND--------------QSGAFQSHENAQVLLEEYYSTLAE-ANEKGRRT-- 887
            |::||:||:...:|.:              ::..|.|.::........|  |.| |:..|..|  
Zfish  4974 TTLEEVFLQLTRDDLEPKESETWSVSESVIENDMFASRDSLSEDCNSMY--LGEKASLTGNSTVR 5036

  Fly   888 GWKLFFLHGRAVIYKRWIAAHRHW--------IVLIFEVLAMALVAVCTFSSIFIYGKNYELEPL 944
            |:.|......|::.||...:.|.|        :.::|.:.||.|.::   .|...:.....|.| 
Zfish  5037 GFALGVQRVIAMLLKRVHHSRRDWKGLFSQVLLPVLFVIAAMGLGSI---KSDLQHFPEIVLSP- 5097

  Fly   945 TFNLSQLHTVDAFVELFSEEED-----VKDMHAY--------------------YTELLYW---- 980
                 .|:.||.....||.:..     |..|.:|                    .|....|    
Zfish  5098 -----ALYHVDEQYAFFSNQNPNTSRLVDTMMSYPGIDHVCMTDPTDPVCKGRPSTGSQTWVSGG 5157

  Fly   981 ----------------------YDAH---------VATLTKNRHNAYALLTQNQFTAHVNSRY-- 1012
                                  ||..         |..||......|.|.|.|.|   :..||  
Zfish  5158 NSSATFTTCKCSNQVQSCPAQGYDPPRKRCPSSQIVYNLTGVNIENYLLATANNF---IRDRYGG 5219

  Fly  1013 -IFGATF-------------DQKIVTAWFNNIPLHSAPYALNVVHNAVARHLFDEEATIDVTLAP 1063
             .||...             ::.:...|:|:...||.|..||.::|...|.....|..       
Zfish  5220 WEFGKPLPIDLKMDMLDVPANRTLSKVWYNSEGHHSMPAYLNSLNNFFLRSSLPPEKR------- 5277

  Fly  1064 LPFRTAINTFPPSSHTF-----------GGCLAF--GICFVLT---FIWPAFAIYMITERGSLLK 1112
              ::.||:.   |||.:           ||.::.  .:| |||   .:..:|.||.:.|..:..|
Zfish  5278 --YQYAISI---SSHPYPGQVQDEDLMVGGLVSILVALC-VLTGYSIMTASFVIYEVQEHHTGSK 5336

  Fly  1113 KQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVALYENPNH-DVMLYGYISVTLMLGGFWVI 1176
            :.|.::|:....||.....||:...:|.....|||||.::.|.. :......:::.|:|.||...
Zfish  5337 RLQQISGISEPFYWIINFFYDMALYMIPVVLSVVMVAAFQLPAFTERQNLAAVTLLLVLFGFSTF 5401

  Fly  1177 LLAYLMASLCRNPCYGFLWLCGINSIGLVCFSQF----------------------------YRT 1213
            ...||::::.::....|        ||.||.:.|                            |:|
Zfish  5402 PWMYLLSAMFKDTEMAF--------IGYVCINLFISVNTIISTSIIYFLGQLNQNDQSIQNIYQT 5458

  Fly  1214 HPESMLLEPTF--------MAMYTVATVICKLFMIYEFKLICMDPVVNFTSVEVFKCNSIPNCCI 1270
            .....|:.|.|        :|...:...|...|.:..:|......|:.:..:.:|....|   | 
Zfish  5459 MSNIFLVFPQFSFGNGLMELARVDMQVQILSGFGVDAYKNPFSMDVLGWMFISMFLQGFI---C- 5519

  Fly  1271 KSNYGTFTAGIYHDLVILTLLDIILLACLFVSEYHSILGFADCRLDTRTNESPD-SNQESRAFPG 1334
                  ||..:   |:..|||..:  ..||..:.:::..::       .||..| .::..|...|
Zfish  5520 ------FTLRL---LLNKTLLRKV--RRLFCWKRNAVQSYS-------PNEDEDVLDERLRVGRG 5566

  Fly  1335 ILSNDTAALVDKEHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSG 1399
            ..|:|   ::...|.:::.:....:..||              :.|...:...||..:.|.|.:|
Zfish  5567 DASSD---ILQVNHLTKVYQNFSKRVQAV--------------KSLSVGIPAGECFGLLGVNGAG 5614

  Fly  1400 KTTLLKVVVNETKMNAGQLWIHDYSVN-THRVQCYR---MVGYCPQKDSLPSEFTPRELLYIHAM 1460
            |||..|::..:...:.|...|.|.... ...:.|.|   .:|||||.|:|....|..|.||.:|.
Zfish  5615 KTTTFKMLTGDISPSGGSAKIRDIDGRMVDIIDCRREGINIGYCPQVDALDDLLTGEEHLYFYAR 5679

  Fly  1461 LQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDP 1525
            ::|...|...::...||:.:.|....|.:....:.|..|:|..|.|::|:|.::.:|...:|:||
Zfish  5680 IRGISKRDISQVVNYLLKKLQLNYHRNNTSESYSCGTRRKLSTALALIGNPQILLLDEPSSGMDP 5744

  Fly  1526 TGKRIILMMTSTMQAMGS-SFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQL 1589
            ..||.:..:.|. |.||. :.:.|..:..:.|.|..|..::::||...:..:......:.||:.:
Zfish  5745 RSKRHLWKIISE-QVMGKCAVVLTSHSMEECEALCTRLAIMVKGQFRCLGSLQHIKNRFGSGFTV 5808

  Fly  1590 EV-------------RFKRKVNPNVSMSRATWNLIN-HFPMSPNKKFSAFMEIKFPDAVLTIERD 1640
            ::             .|.::..|...:.....|::. |.|::|....|.|..::....||.|:. 
Zfish  5809 KMYLTGASYDVDMISNFMQQNFPGTCLKDNHSNMVEYHVPVAPGGVASIFSLLESNKTVLQIKH- 5872

  Fly  1641 DSMVFVLPLGTTTFSEIFL 1659
                  ..:..||..|:|:
Zfish  5873 ------FSVSQTTLDEVFI 5885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 44/225 (20%)
CcmA 541..848 CDD:224054 91/319 (29%)
ABC_subfamily_A 541..761 CDD:213230 66/220 (30%)
ABC2_membrane_3 911..>1189 CDD:289468 77/378 (20%)
ABC2_membrane <1080..>1188 CDD:304374 30/124 (24%)
ABC_subfamily_A 1370..1577 CDD:213230 56/211 (27%)
PRK14255 1371..1586 CDD:172743 56/219 (26%)
abca12XP_686632.6 ABC2_membrane_3 4268..4588 CDD:289468 70/359 (19%)
CcmA 4666..4941 CDD:224054 83/296 (28%)
ABC_subfamily_A 4666..4885 CDD:213230 70/240 (29%)
ABC2_membrane_3 <5245..5493 CDD:289468 59/268 (22%)
CcmA 5572..5886 CDD:224054 76/336 (23%)
ABC_subfamily_A 5573..5799 CDD:213230 59/240 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.020

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