DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and abca4b

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_021322694.1 Gene:abca4b / 555506 ZFINID:ZDB-GENE-050517-4 Length:2327 Species:Danio rerio


Alignment Length:2014 Identity:420/2014 - (20%)
Similarity:766/2014 - (38%) Gaps:535/2014 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LMRFF---IPVNHRSDTVYDPIDLDRSWMQMVEKLEKARQVADTYN--VKGNPFTPHLVIGWAPK 103
            |..||   |.:|...||:.:|..:|....::.|.....:.:.:..:  .:|..|.......|:  
Zfish   438 LWDFFQNSIQMNMIRDTLRNPTVMDFLDRRLRETEFSTKDILNFLHNGPEGERFMNMTSFDWS-- 500

  Fly   104 RYGIFQ------AMMRRVQKQIEPMTSVGFEDCEEMRESVI----ENGLFAGLCFDGSPFVEDQV 158
              .:|:      .|..|..:.|.....||..|...|....:    ||..:|||.|          
Zfish   501 --DVFRLADQAIRMFNRYSECISLDKFVGHMDENLMTHQALHLLGENKFWAGLVF---------- 553

  Fly   159 FEEDTLESYSNIQPMLNYTILLPSELRM---LDGD-------FRMANWMTLYNDDPNTFVLTRLN 213
                        ..|..:||.||..::.   :|.|       .:...|      ||....     
Zfish   554 ------------MDMYPWTIELPRHVKFKIRMDIDAVERTNKIKDRYW------DPGPRA----- 595

  Fly   214 QPYEGGFVGYVREGFIRLQKSVSESFLVL-TSHKSLPTIQIRRFPITGREQDPLMGNLNYGMPFI 277
            .|.|..  .|:..||..||..:....|.| |.|.....:.:::.|......|..|..||...|..
Zfish   596 DPVEDH--RYIWGGFAYLQDLIEHGILKLHTGHDWPLGVYLQQMPYPCYVDDMFMLTLNRCFPIF 658

  Fly   278 IIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRW 342
            :::.:::...:.|..:|.||:.::::.|..|.:.|.:.:.:|::...|....|:.::..::    
Zfish   659 MVLAWIYSVSMVVKSIVLEKEMRLKETLKAMGVSNGVIWYTWFIDSFIMMTASTALLTGIV---- 719

  Fly   343 DQDHGVLTQTPWYILILVLFCYNCAAVAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFI----- 402
             ....||..:...||.|.|..:..|.:....:::.||..|..|.....|::...|:|...     
Zfish   720 -MAGKVLNYSNPIILFLFLLTFTVATIMQCFLMSVFFNKANLAAACSGIIYFTLYLPHIFCFAWQ 783

  Fly   403 --LSNNLEGNIHALRYVSYALPNVVATLVIEFLIERESIVHITWEDSGYRLNYD--------GGH 457
              ::.:::..:..|..|::....       |:|..        :|:.|..|.:|        |..
Zfish   784 DRITKDMKLAVSLLSPVAFGFGT-------EYLSR--------YEEQGLGLQWDNIGTSPLEGDE 833

  Fly   458 ITVTASSWIFMLNALVYCAIGLYVD-MWRGGDRSGKKMKKP-------------NTNASVQEDP- 507
            .:...|..:.:|:|::|..:..|:| ::.|....|:....|             .|:.:|.|.| 
Zfish   834 YSFFTSIRMMLLDAVLYGVLAWYLDNVFPGQYGIGRPFYFPLQSSYWLKPSPPSETSNAVPEKPL 898

  Fly   508 --YHERGDSFTHQG------QAIGVNSTK------------------------------------ 528
              :.|:.:...:.|      :..|..::|                                    
Zfish   899 ENHVEKQEDVEYGGLSPEHRECNGSRNSKHCKHKEKRERMEKEREREEQLKMQEEIQQEEIQQWY 963

  Fly   529 ----IYEVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILA 589
                .:|.||......:.::.|.|.:....|||::..:.|.||:::|..:||||.||:|.|.||.
Zfish   964 CENPFFEPEPESLLIGVSVQDLVKMYNRYSRPAVDCLNMNFYESQITSFLGHNGAGKTTTLSILT 1028

  Fly   590 GLVEPSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKGL-HNNIEIDG 653
            ||..|:.||..|...:|:||..|....||:...|::|....||.:::.|...:||. |...|.:.
Zfish  1029 GLFPPTSGTAYIYGRDIRTEMDAIRQSLGMCPQHNILFKHLTVEEHILFYSLMKGREHKEAEQEV 1093

  Fly   654 QSNYFLNVLQIGGLKTKR---IRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWN 715
            :     |:|:..||..||   .:.|:......:|:..||||.|.::::|:..|.:|..::..:|:
Zfish  1094 E-----NMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGGSRVVILDEPTSGVDPYSRRSIWD 1153

  Fly   716 LINEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCV------- 773
            |:.:.::.||:||.::....|:.::||:||:|.|:|.|:|:..||||.:|.|:.||.|       
Zfish  1154 LLLKYRTGRTVILSTHHMDEADLLSDRVAIISKGKLHCSGSPLFLKNCFGVGFYLTLVRRMKDQR 1218

  Fly   774 KGKN-----------------YKR---------------DELFGMMNSYMPNMSIERDIGYKVTF 806
            |.:|                 ||.               :.:..:::.::|...:...||.::|:
Zfish  1219 KKENECDCASECSCTCSTCTRYKEESQALQPERVLDGNVESITTLIHHHVPEAKLIEMIGQEMTY 1283

  Fly   807 VLENK-FEDQ-FPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLRFGCEDNDQSGA-------FQS 862
            :|.|| |:.: :..|..:|||.:..:|:.||.|.|||:|||||:...:....:.:       .|.
Zfish  1284 LLPNKGFKYRAYASLFRELEETLGDMGLSSFGISDTSLEEIFLKVTADGEAANSSVTPEQWMLQQ 1348

  Fly   863 HENAQVLLEEYYSTLAE-AN----------EKGRRT----GWKLFFLHGRAVIYKRW---IAAHR 909
            .:|....:::  :.||| ||          .:||.:    |:.|......|::.||:   ..:|:
Zfish  1349 RKNGNGFMKD--TGLAEDANGVGASLESDSSEGRASRQVKGFSLVLKQFHALLVKRFHHATRSHK 1411

  Fly   910 HWIVLIFEVLAMALVAV-------------CTFSSIFIYG------------------------- 936
            .::..|....:..|:|:             |...:.::||                         
Zfish  1412 DFLAQIVLPASFVLIALVFTMIVPPFGEYPCLTLTPWMYGPQFTFISNEQPSHPKMKHFIQTLLK 1476

  Fly   937 ------------------------KNYELEPLTFNLSQL-------------------------- 951
                                    .::|:.|::..:|.:                          
Zfish  1477 DPGMGTRCMANQPLENIFTCLNSSSDWEVPPVSPEVSNILSSPEWDSRNPSPSCECSTDLKLTML 1541

  Fly   952 -----------------HTVDAFVELFSEEEDVKD-MHAYYTELL-------YWYD--------- 982
                             .|.|..:::  ...::.| :...||:|:       ||.:         
Zfish  1542 PMCPAGAGGLPPRQRKEPTGDILLDM--TNRNISDYLVKTYTKLIKTSLKSKYWVNEQRYGGISV 1604

  Fly   983 ---------------------AHVATLTKNRHNAYALLTQNQFTAHVNSRYIFGATFDQKIVTAW 1026
                                 ..:..:...|::..|:.....|..::.|.|         .|..|
Zfish  1605 GGRLPILDVDPEEIQNIFSQLGRMMNIRGGRYSKSAMDELETFLHYMESEY---------NVKVW 1660

  Fly  1027 FNNIPLHSAPYALNVVHNAVARHLFDEEAT------------IDVTLAPLPFRTAINTFPPSSHT 1079
            :||...|:....|||.:||:.|......|.            :::|...|...|.:.|      :
Zfish  1661 YNNKGWHAMASFLNVANNAILRAYLPPHANPSDYGITAINHPLNLTKEQLSEVTVLTT------S 1719

  Fly  1080 FGGCLAFGICFVLTFIWPAFAIYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACV 1144
            ....:|..:.|.::||..:|.:|:|.||.:..|..||::||....||.....:|:|...:..|.|
Zfish  1720 VDAVVAICVIFAMSFIPASFVLYLIQERVTKAKHLQFVSGVSPLVYWFANFFWDMLNYSVSTAMV 1784

  Fly  1145 VVMVA-----LYENPNH------DVMLYGYISVTLMLGG----FWVILLAYLMASLCRNPCYGFL 1194
            |.:..     .|.:|.:      .:.|||: |||.|:..    |.|...||:..| |.|     |
Zfish  1785 VAIFVGFDKKCYTSPTNLPALIALLCLYGW-SVTPMMYPLSYMFNVPSTAYVSLS-CIN-----L 1842

  Fly  1195 WLCGINSIGLVCFSQFYRTH----------PESMLLEPTF--------MAMYTVATVICKLFMIY 1241
            :: ||||..:....:.:..:          .:.:|:.|.|        |||....|.:...|. .
Zfish  1843 FI-GINSSAITFILELFENNRSLLMFNEVLKKVLLVFPHFCLGRGLIDMAMNQAVTDVYARFG-E 1905

  Fly  1242 EFKLICMDPV-VNFTSVEVFKCNSIP-------NCCIKSNYGTFTAGIYHDLVILTLLDIILLAC 1298
            ||.   |||. .||....:| |.::.       |..|:  |..|   ::|               
Zfish  1906 EFS---MDPFRWNFVGKNLF-CMAVEGFVYFIFNLLIQ--YKFF---LHH--------------- 1946

  Fly  1299 LFVSEYHSILGFADCRLDTRTNESPDSNQE-SRAFPGILSNDTAALVDKEHTSRLNEEERSKYAA 1362
             ::|:|...||         |:|..|..|| .|.:.|...||...:.|...|.|..:........
Zfish  1947 -WISDYGMSLG---------TDEDDDVAQERERIYKGGNKNDILLIRDLSKTYRRRKRPAVDKIC 2001

  Fly  1363 VGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYSVNT 1427
            ||:                   ...||..:.|.|.:||||..|::..:|.:.:|:|.:..||:.:
Zfish  2002 VGV-------------------PAGECFGLLGVNGAGKTTTFKMLTGDTDVTSGELSVAGYSILS 2047

  Fly  1428 HRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRSVRM 1492
            :.:..::.:|||||.|::....|.||.||::|.|:|........::|..::.:||:.........
Zfish  2048 NILDVHQNMGYCPQFDAIDELLTGREHLYLYARLRGIPESEISRVAEWGIQKLGLSEYAGNCAGT 2112

  Fly  1493 CTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAER 1557
            .:.|..|:|..|.|::|.|.|:.:|....|:||..:|.:.....::...|.:.:.|..:..:.|.
Zfish  2113 YSGGNKRKLSTAIAMIGCPPLVLLDEPTTGMDPHSRRFLWTAILSIIRDGRAVVLTSHSMEECEA 2177

  Fly  1558 LSLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKKF 1622
            |..|..:::.|....:..:......:..||.:.::.| ...|.:|..           :.|.:  
Zfish  2178 LCTRLAIMVNGTFKCLGTIQHLKYKFGGGYVVTMKIK-AAKPGLSPD-----------LVPAE-- 2228

  Fly  1623 SAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNIEDYFITRNMLVGFQIF 1686
             :||:..||..:...:..:::.:  .:...:.:.:|..:..:...:|||||.:::..|  .|:|
Zfish  2229 -SFMDSSFPGCIQREKHYNTLQY--EIAAASLARVFQLVLTNKERLNIEDYSVSQTTL--DQVF 2287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 42/231 (18%)
CcmA 541..848 CDD:224054 108/351 (31%)
ABC_subfamily_A 541..761 CDD:213230 73/223 (33%)
ABC2_membrane_3 911..>1189 CDD:289468 74/447 (17%)
ABC2_membrane <1080..>1188 CDD:304374 36/122 (30%)
ABC_subfamily_A 1370..1577 CDD:213230 50/206 (24%)
PRK14255 1371..1586 CDD:172743 50/214 (23%)
abca4bXP_021322694.1 AAA 1..2315 CDD:333001 420/2014 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582262
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.750

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