DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and abca4

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_001011033.1 Gene:abca4 / 496442 XenbaseID:XB-GENE-1000810 Length:2359 Species:Xenopus tropicalis


Alignment Length:1935 Identity:390/1935 - (20%)
Similarity:708/1935 - (36%) Gaps:528/1935 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 ENGLFAGLCF-DGSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSELRMLDGDFRMANWMTLYND 202
            ||..:|||.| |..|:.       :||.|:      :.|.|.:..:........:...|      
 Frog   544 ENKFWAGLVFLDMFPWT-------NTLPSH------VKYKIRMDIDAVEKTNKIKDRYW------ 589

  Fly   203 DPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFLVLTSHKSLPT-IQIRRFPITGREQDPL 266
            ||....     .|.|.  :.|:..||..||..:....:...:...:|. |.:::.|......|..
 Frog   590 DPGPRA-----DPVED--MRYIWGGFAYLQDMIDHGIIKSQTSTEVPAGIYLQQMPYPCFVDDVF 647

  Fly   267 MGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLIHFVSWYLKGLIYEMISS 331
            |..||...|..:::.:::...:.|..:|.||:.::::.:.||.:.|.:.:::.::........|:
 Frog   648 MITLNRCFPIFMVLAWIYSISMLVKDIVLEKELRLKETMKNMGVTNDVIWLTRFIDSFTVMTTST 712

  Fly   332 LIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCAAVAFAIMVAAFFRNALNAVRVLTILWIMS 396
            :::..::.:     .|||..:...||...|..:..|.:..|.:::.||..|..|.....:::...
 Frog   713 ILLTVVIVV-----GGVLHYSNPIILFCFLMAFTIATIMQAFLMSVFFSKANLAAACSGVIYFTL 772

  Fly   397 YVPTFILSNNLEGNIHALRYVSYALPNVVATLVIEFLIERESIVHITWEDSGYRLNY-------- 453
            |:|..:.....:.....|:.::..|..|......|:|..        :|:.|..|.:        
 Frog   773 YLPHILCFAWQDRMTIKLKTLASFLSPVAFGFGTEYLSR--------YEEQGLGLQWGNIRKSPM 829

  Fly   454 DGGHITVTASSWIFMLNALVYCAIGLYVD--------------------MW------RGGD---- 488
            :|...:...|.::.:|:|.:|..:..|:|                    .|      .|||    
 Frog   830 EGDEYSFLFSIFMMLLDAFIYWTLAWYIDHVFPGEYGIPKPWYFPFLATYWCKFEHEFGGDADSI 894

  Fly   489 ----------------------------------RSGK---------------KMKKPNTNASVQ 504
                                              :|.|               |:||.......|
 Frog   895 ETELSIHEHIEENHIEPTDNQPEALPDGVKEEAEKSVKQDDIIVNKDSSACKHKVKKEKEQEEKQ 959

  Fly   505 EDPYHER--------GDSFTHQGQAIGVNSTKIYEVEPSHRRFKLKIKKLCKRFATNDRPALNLF 561
            .....|:        .|.||:.|       ...:|.||......:.|:.|.|.:....:||::..
 Frog   960 RKDEQEKERNDKDDMKDGFTYIG-------NPFFEPEPPGMVPGVYIQDLVKVYENTYKPAVDRM 1017

  Fly   562 SWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPSRGTVMISSHNIQTERKAASMELGIAFGHDML 626
            :...||.::|..:||||.||:|.|.|:.||..|:.|||.:...:|||...:....||:...|::|
 Frog  1018 NITFYEGQITAFLGHNGAGKTTTLSIITGLFPPTSGTVWVRGRDIQTHMDSIRQSLGMCPQHNIL 1082

  Fly   627 LTGFTVIDYLRFICRVKGLHNNIEIDGQSNYFLNVLQI------------GGLKTKRIRTLTDRD 679
            ....||.:::.|..::|| .:..:.:.|:...|..:.|            ||::.|         
 Frog  1083 FRHLTVEEHILFYAQLKG-KSRKQAERQAEVMLEDMGIPHKRNDEAQNLSGGMQRK--------- 1137

  Fly   680 LCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRTIILVSNSPALAENIADRMA 744
               :|:..||||.|.::::|:..|.:|..::..:|:|:.:.:|.|||||.::....|:.:.||:|
 Frog  1138 ---LSVALAFVGESKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIILSTHHMDEADLLGDRIA 1199

  Fly   745 IMSNGELKCTGTKPFLKNMYGHGYRLTCVK--------GK-----------------------NY 778
            |:|.|:|.|:|:..||||.:|.|:.||.|:        ||                       |.
 Frog  1200 IVSQGKLFCSGSPLFLKNCFGTGFYLTLVRRMRNIKDTGKKDSASCQSDCSCPCSSCTPKVKENL 1264

  Fly   779 KRDELFG-------MMNSYMPNMSIERDIGYKVTFVLENK-FEDQ-FPMLIDDLEENMQQLGVVS 834
            ...||.|       :::.::|...:...||.::.::|.:| |:.: :..|..:|||.:..||:.|
 Frog  1265 LEQELDGDVSGLTELIHHHVPEAKLLESIGQELIYLLPSKDFKFRAYASLFRELEETLGDLGLSS 1329

  Fly   835 FRIRDTSMEEIFLRFGCE-----DNDQSGAFQSHENAQVLLEEYYSTLAEANEKGRRT------- 887
            |.|.||.:|||||:...:     :..:....|..::...|..:..:|:...:.||:.:       
 Frog  1330 FGISDTPLEEIFLKVTADSVTGTETPEEWMLQQRKSRTSLGVDNQTTVINIDNKGQESSIRKDSH 1394

  Fly   888 -------------------------GWKLFFLHGRAVIYKRW---IAAHRHW---IVLIFEVLAM 921
                                     |.:|......|:|.||:   ..:|:.:   |||....:.:
 Frog  1395 HCKAEKNPPNINDREADGRGSRQIKGTELLQQQFNALIIKRFKHATRSHKDFFAQIVLPASFVLL 1459

  Fly   922 ALV------------------------------------AVCTFSSIFI--------------YG 936
            |||                                    .:.|||:.|:              ..
 Frog  1460 ALVFTLIVPPFGEYPSLTLHPWIYGQQFVFFSNEQPGNEQMATFSNAFLNSPGLGTRCMKDQPLS 1524

  Fly   937 KNYE------------LEPLTFN--LSQLHTVD------------------------------AF 957
            |.|:            :.|...|  |||..|.|                              ..
 Frog  1525 KKYQCTNTSNEWTMPAVSPSVTNMLLSQEWTRDNPSPSCTCSSRSKLMMLPECPEGAGGRPPPQR 1589

  Fly   958 VELFSE------EEDVKD-MHAYYTELL-------YWYD----------AHVATLTKNRHNAYAL 998
            ::..||      |.::.| :...|.:|:       ||.:          ..:..|.....:..:.
 Frog  1590 IQPSSEIIQDLTERNISDFLLKTYPDLIRSSMKSKYWVNEQRYGGISVGGKLPVLHVKGGDIVSF 1654

  Fly   999 LTQ----NQFTAHVNSRYIFG--ATFDQKIVT-----AWFNNIPLHSAPYALNVVHNAVARHLF- 1051
            .:|    ...||...::.|..  .||.|.:.|     .||||...||....:||.:||:.|... 
 Frog  1655 FSQVGQMTNVTAGTTTKAISQELQTFLQNLETEDNIKVWFNNKGWHSMVIFINVANNAILRANLG 1719

  Fly  1052 ----DEEATIDVTLAPLPFR-------TAINTFPPSSHTFGGCLAFGICFVLTFIWPAFAIYMIT 1105
                .||..|.....||...       |.:.|      :....:|..:.|.::||..:|.:|:|.
 Frog  1720 ADKDPEEFGITTMNHPLNLTKDQLSEVTVLTT------SVDVVVAICVIFAMSFIPASFVLYLIQ 1778

  Fly  1106 ERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVALYENPNHD-----------VM 1159
            ||.|..|..||::||....||.....:|::...|..|.||::...::...:.           :.
 Frog  1779 ERVSNAKHLQFVSGVTPAIYWLTNFAWDIINYAISVAMVVIIFIAFDKKAYTSSSNLPALIALLF 1843

  Fly  1160 LYGYISVTLMLGG---FWVILLAYLMASLCRNPCYGFLWLCGINSIGLVCFSQFYRTH------- 1214
            .||:..:.:|...   |.|...||:..| |.|     |:: ||||..:......:..:       
 Frog  1844 FYGWAVIPMMYPASYLFNVPSTAYVALS-CIN-----LFI-GINSSAITFILDLFENNRSLLKFN 1901

  Fly  1215 ---PESMLLEPTF--------MAMYTVATVICKLF--------MIYEFK-----LICMDPVVNFT 1255
               .:.:|:.|.|        :||....|.:...|        ..:||.     .:.::.||.||
 Frog  1902 EKLKDLLLIFPHFCLGRGLIDLAMNQAVTDVYARFGEEHVSNPFQWEFLGRNIFAMAVEGVVYFT 1966

  Fly  1256 SVEVFKCNSIPNCCIKSNYGTFTAGIYHDLVILTLLDIILLACLFVSEYHSILGFADCRLDTRTN 1320
                                               |::::....|.|.:     |::........
 Frog  1967 -----------------------------------LNLLIQHRFFFSTW-----FSEPPKGLVEG 1991

  Fly  1321 ESPDSNQE-SRAFPGILSNDTAALVDKEHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTL 1384
            |..|..|| .|...|...||...|  ||.|.....::......:.:|:                 
 Frog  1992 EDEDVAQERQRVIKGGGKNDILKL--KELTKTYPGKQSPAVDRLCVGV----------------- 2037

  Fly  1385 AKSECLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEF 1449
            ...||..:.|.|.:||||..|::..:.::.:|...:..||:.......::..|||||.|::....
 Frog  2038 RPGECFGLLGVNGAGKTTTFKMLTGDIQVTSGDASVAGYSILQDIADVHQNSGYCPQFDAIDDLL 2102

  Fly  1450 TPRELLYIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLI 1514
            |.||.|.::..|:|........:::..:..:||....:......:.|..|:|..|.|::|.|.::
 Frog  2103 TGREHLQLYGRLRGVPEDEIDMVADWGIEKLGLGKYADNLTGTYSGGNKRKLSTAIALIGCPPVV 2167

  Fly  1515 CVDGVPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTE 1579
            .:|....|:||..:|.:.....::...|.:.:.|..:..:.|.|..|..::::|....:..:...
 Frog  2168 LLDEPTTGMDPQSRRFLWNSIVSIIKEGRAVVLTSHSMEECEVLCTRLAIMVKGTFKCLGTIQHL 2232

  Fly  1580 TENYKSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMV 1644
            ...:..||.:.::. |...|.::..           ..|.:|   |::..||.:|...:..:.:.
 Frog  2233 KYKFGDGYIVTMKV-RASKPGLAPD-----------PGPVEK---FIQTNFPGSVQREKHYNMLQ 2282

  Fly  1645 FVLPLGTTTFSEIFLTLRKDAFEMNIEDYFITRNML-VGFQIFTYDQHQD 1693
            :  .|.:::.:.:|..|..:...:|||:|.:::..| ..|..|...|.:|
 Frog  2283 Y--QLSSSSLARVFQLLISNKDSLNIEEYSVSQTTLDQVFVNFAKQQTED 2330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 40/224 (18%)
CcmA 541..848 CDD:224054 104/358 (29%)
ABC_subfamily_A 541..761 CDD:213230 69/231 (30%)
ABC2_membrane_3 911..>1189 CDD:289468 85/435 (20%)
ABC2_membrane <1080..>1188 CDD:304374 31/121 (26%)
ABC_subfamily_A 1370..1577 CDD:213230 44/206 (21%)
PRK14255 1371..1586 CDD:172743 44/214 (21%)
abca4NP_001011033.1 rim_protein 1..2347 CDD:130324 390/1935 (20%)
ABC2_membrane 604..>778 CDD:304374 34/178 (19%)
ABC_subfamily_A 997..1216 CDD:213230 69/231 (30%)
ABC_subfamily_A 2013..2233 CDD:213230 49/238 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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