DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and Abca1

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_038965774.1 Gene:Abca1 / 313210 RGDID:631344 Length:2263 Species:Rattus norvegicus


Alignment Length:1995 Identity:414/1995 - (20%)
Similarity:773/1995 - (38%) Gaps:488/1995 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 KLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNHRSDTVYDPIDL---DRSWMQMVEKLE---- 76
            :|.|.:.||.:...|.|.::|        |:..:...|.|...:|.   |:.|.:.::.|:    
  Rat   405 ELALFHDLEGMWEELSPQIWT--------FMESSQEMDLVRTMLDSRGNDQFWERKLDGLDWTAQ 461

  Fly    77 -----KARQVADTYNVKGNPFTPHLVIGWAPKRYGIFQAMMRRVQKQIEPMTSVGFEDCE----E 132
                 .|:...|..:..|:.:|      |..    .|....:.:|.....|..|.....|    |
  Rat   462 DIMAFLAKNPEDVQSPNGSVYT------WRE----AFNETNQAIQTISRFMECVNLNKLEPIPTE 516

  Fly   133 MR------ESVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSELRMLDGDF 191
            :|      |.:.|...:||:.|.|        ...|::|...:::    |.|.:..:........
  Rat   517 VRLINKSMELLDERKFWAGIVFTG--------ITPDSVELPHHVK----YKIRMDIDNVERTNKI 569

  Fly   192 RMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFL-VLTSHKSLPTIQIRR 255
            :...|      ||....     .|:|.  :.||..||..||..|.::.: |||..:....:.:::
  Rat   570 KDGYW------DPGPRA-----DPFED--MRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYVQQ 621

  Fly   256 FPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLIHFVSWY 320
            .|......|..:..::..||..:.:.:::...:.:..:|.||::::::.:..|.:.|.|.:.||:
  Rat   622 MPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILWFSWF 686

  Fly   321 LKGLIYEMISSLIIAALLK----IRWDQDHGVLTQTPWYILILVLFCYNCAAVAFAIMVAAFFRN 381
            :..||..::|:.::..:||    :.:.....|......:.::.:|.|:         :::..|..
  Rat   687 ISSLIPLLVSAGLLVIILKLGDLLPYSDPSVVFVFLSVFAVVTILQCF---------LISTLFSR 742

  Fly   382 ALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLVIE---------FLIERE 437
            ...|.....|::...|:| ::|.      :....||.::: .:.|:|:..         |.:..|
  Rat   743 TNLAAACGGIIYFTLYLP-YVLC------VAWQDYVGFSI-KIFASLLSPVAFGFGCEYFALFEE 799

  Fly   438 SIVHITWEDSGYR--LNYDGGHITVTASSWIFMLNALVYCAIGLYVDMWRGGDRSGKKMKKPNTN 500
            ..:.:.| |:.::  :..||.::|.:.|..:|  :..:|..:..|::....|...   :.:|...
  Rat   800 QGIGVQW-DNLFKSPVEEDGFNLTTSVSMMLF--DTFIYGVMTWYIEAVFPGQYG---IPRPWYF 858

  Fly   501 ASVQEDPYHERGDSFTHQGQAIGVNSTKIYEVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNV 565
            ...:...:.|..|..:|.|.:....|....|.||:|.:..:.|:.|.|.:....:.|::..:.|.
  Rat   859 PCTKSYWFGEEIDEKSHPGSSQKGASEICMEEEPTHLKLGVSIQNLVKVYRDGMKVAVDGLALNF 923

  Fly   566 YENEVTVLMGHNGCGKSTLLKILAGLVEPSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGF 630
            ||.::|..:||||.||:|.:.||.||..|:.||..|...:|::|..:....||:...|::|....
  Rat   924 YEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMNSIRQNLGVCPQHNVLFDML 988

  Fly   631 TVIDYLRFICRVKGL---HNNIEIDGQSNYFLNVLQIGGLKTKRIRTLT-------DRDLCLVSI 685
            ||.:::.|..|:|||   |...|::..:   |:|    ||...::::.|       .|.|   |:
  Rat   989 TVEEHIWFYARLKGLSEKHVKAEMEQMA---LDV----GLPPSKLKSKTSQLSGGMQRKL---SV 1043

  Fly   686 CCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRTIILVSNSPALAENIADRMAIMSNGE 750
            ..||||.|.::::|:..:.:|..::..:|.|:.:.:..|||||.::....|:.:.||:||:|:|:
  Rat  1044 ALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTIILSTHHMDEADILGDRIAIISHGK 1108

  Fly   751 LKCTGTKPFLKNMYGHGYRLTCVK------------------------------------GKNYK 779
            |.|.|:..||||..|.||.||.||                                    |...:
  Rat  1109 LCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSCLKKVVPELPAAGQSGGRGGEVQ 1173

  Fly   780 R--------DELFGMMNSYMPNMSIERDIGYKVTFVL--ENKFEDQFPMLIDDLEENMQQLGVVS 834
            |        ..:..::..::....:..|||:::|:||  |...|..|..|..::::.:..||:.|
  Rat  1174 RLVALTQDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISS 1238

  Fly   835 FRIRDTSMEEIFLRF----GCEDNDQSGAFQSHENAQVLLEEYYSTL-------------AEANE 882
            :.|.:|::|||||:.    |.:.....|...:..|.:...:: .|.|             ::.:.
  Rat  1239 YGISETTLEEIFLKVAEESGVDAETSDGTLPARRNRRAFGDK-QSCLHPFTEDDAVDPNDSDLDP 1302

  Fly   883 KGRRT---------------GWKLFFLHGRAVIYKRWIAAHRH------WIVLIFEVLAMALVAV 926
            :.|.|               ||||......|:::||.:.|.|.      .|||....:.:|||  
  Rat  1303 ESRETDLLSGMDGKGSYQLKGWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALV-- 1365

  Fly   927 CTFSSIF-IYGK--NYELEPLTFN------------------LSQLHTVD--------------- 955
              ||.|. .:||  |.||:|..:|                  |....|.|               
  Rat  1366 --FSLIVPPFGKYPNLELQPWMYNEQYTFVSNDAPEDMGTQELLNALTKDPGFGTRCMEGNPIPN 1428

  Fly   956 -----------------AFVELFS---------------EEEDVKDM----------------HA 972
                             ..::||.               ..:.:|.|                ..
  Rat  1429 TPCLVGEEDWTTGPVPQTLMDLFQNGNWTMKNPSPSCQCSSDKIKKMLPVCPPGAGGLPPPQRKQ 1493

  Fly   973 YYTELL----------YWYDAHVATLTKN----------RHNAYAL-LTQNQF---TAHVNS--- 1010
            ...::|          |....:|..:.|:          |:..::| ::.:|.   :..||:   
  Rat  1494 KTADILQNLTGRNISDYLVKTYVQIIAKSLKNKVWVNEFRYGGFSLGVSDSQALPPSQEVNNAIK 1558

  Fly  1011 ---------------RYI-----FGATFDQK-IVTAWFNNIPLHSAPYALNVVHNAVARHLFDEE 1054
                           |::     |....|.| .|..||||...|:....|||::||:.|      
  Rat  1559 QMKKLLKLTKDSSADRFLSSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILR------ 1617

  Fly  1055 ATIDVTLAPLPFRTAINTFPPSSH---------------TFGGCLAFGIC--FVLTFIWPAFAIY 1102
              .::.....|.:..|..|   :|               |....:...||  |.::|:..:|.::
  Rat  1618 --ANLQKGENPSQYGITAF---NHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVF 1677

  Fly  1103 MITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVALYENPNHDVMLYGYISVT 1167
            :|.||.|..|..||:.||:...||....::|:...::....||::...::..:       |:|.|
  Rat  1678 LIQERVSKAKHLQFICGVKPVIYWLSNFVWDMCNYVVPATLVVIIFICFQQKS-------YVSST 1735

  Fly  1168 --------LMLGGFWVILLAYLMASLCRNPCYGFLWLCGIN-SIGLVCFSQFYRTHPESMLLEPT 1223
                    |:|.|:.:..|.|..:.:.:.|...::.|..:| .||:                   
  Rat  1736 NLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGI------------------- 1781

  Fly  1224 FMAMYTVATVICKLFMIYEFKLI--------------CMDPVVNFTSVEVFKCNSIPNCCIKSNY 1274
               ..:|||.:.:||...:|..|              |:...:    :::.|..::.:...:...
  Rat  1782 ---NGSVATFVLELFTNNKFNDINDILKSVFLIFPHFCLGRGL----IDMVKNQAMADALERFGE 1839

  Fly  1275 GTFTAGIYHDLV-----------ILTLLDIILLACLFVSEYHSILGFADCRLDTRTNESPDSNQE 1328
            ..|.:.:..|||           ::..|..:|:...|......:    ..||....:|..|..:|
  Rat  1840 NRFVSPLSWDLVGRNLFAMAVEGVVFFLVTVLIQYRFFIRPRPV----KARLPPLNDEDEDVRRE 1900

  Fly  1329 -SRAFPGILSNDTAALVDKEHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSI 1392
             .|...|...||...:  ||.|.....:.:.....:.:||                 ...||..:
  Rat  1901 RQRILEGGGQNDILEI--KELTKIYRRKRKPAVDRICVGI-----------------PPGECFGL 1946

  Fly  1393 TGANNSGKTTLLKVVVNETKMNAGQLWIHDYSV--NTHRVQCYRMVGYCPQKDSLPSEFTPRELL 1455
            .|.|.:|||:..|::..:|.:..|...::..|:  |.|.|  ::.:|||||.|::....|.||.|
  Rat  1947 LGVNGAGKTSTFKMLTGDTAVTRGDALLNKNSILSNIHEV--HQNMGYCPQFDAITELLTGREHL 2009

  Fly  1456 YIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVP 1520
            ...|:|:|...:...::.|..:|.:||.....:.....:.|..|:|..|.|::|.|.::.:|...
  Rat  2010 EFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSGGNKRKLSTAIALIGGPPVVFLDEPT 2074

  Fly  1521 AGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKS 1585
            .|:||..:|.:.....::...|.|.:.|..:..:.|.|..|..:::.|:...:..:......:..
  Rat  2075 TGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGD 2139

  Fly  1586 GYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMVFVLPLG 1650
            ||.:.||.... ||::                  |....|..:.||.:||..:..:.:.:.||..
  Rat  2140 GYTIVVRIAGS-NPDL------------------KPVQEFFGLAFPGSVLKEKHRNMLQYQLPSS 2185

  Fly  1651 TTTFSEIFLTLRKDAFEMNIEDYFITRNML-VGFQIFTYDQHQDN 1694
            .::.:.||..|.:....::||||.:::..| ..|..|..||..|:
  Rat  2186 LSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDD 2230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 39/231 (17%)
CcmA 541..848 CDD:224054 102/362 (28%)
ABC_subfamily_A 541..761 CDD:213230 71/229 (31%)
ABC2_membrane_3 911..>1189 CDD:289468 80/434 (18%)
ABC2_membrane <1080..>1188 CDD:304374 27/117 (23%)
ABC_subfamily_A 1370..1577 CDD:213230 50/208 (24%)
PRK14255 1371..1586 CDD:172743 50/216 (23%)
Abca1XP_038965774.1 rim_protein 1..2238 CDD:130324 414/1995 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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