DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and Abca4

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_001101191.1 Gene:Abca4 / 310836 RGDID:1309445 Length:2290 Species:Rattus norvegicus


Alignment Length:2048 Identity:437/2048 - (21%)
Similarity:780/2048 - (38%) Gaps:554/2048 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 WKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNHR----SDTVYDPID----LDRSWMQM 71
            |:..|     ||.:..||..|.            .|...|    :::.::.:|    |.::|.::
  Rat   368 WRATK-----PLLMGKILFTPD------------SPAARRLLKNANSTFEELDRVRKLVKAWEEV 415

  Fly    72 VEKL----EKARQVADTYNVKGNP--------------FTPHLVIGWAPKR-------------- 104
            ..::    ||:.|:|...:...:|              .|...::.:.|..              
  Rat   416 GPQIWYFFEKSTQMAVIRDTLQHPTVKDFINRQLGEEGITTEAILNFFPNGPRENQADDMTSFDW 480

  Fly   105 ---YGIFQAMMRRVQKQIEPMTSVGFEDCEEMRE------SVI-ENGLFAGLCF-DGSPFVEDQV 158
               :.|....:|...:.:|.:....||..::..:      |:: ||..:||:.| |..|:.    
  Rat   481 RDIFNITDRFLRLANQYLECLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWT---- 541

  Fly   159 FEEDTLESYSNIQPMLNYTILLPSELRMLDGDFRMANWMTLYNDDPNTFVLTRLNQPYEGGFVGY 223
                     |::.|.:.|.|.:..::.......:...|    :..|..       .|.|.  ..|
  Rat   542 ---------SSLPPHVKYKIRMDIDVVEKTNKIKDRYW----DSGPRA-------DPVED--FRY 584

  Fly   224 VREGFIRLQKSVSESFLVLTSHKSLPTI--QIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPA 286
            :..||..||..| |..:|.:...:.|.|  .:::.|......|..|..||...|..:::.:::..
  Rat   585 IWGGFAYLQDMV-EQGIVRSQTPAEPPIGVYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSV 648

  Fly   287 QLFVWQVVSEKQSQVRQFLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHG-VLT 350
            .:.|..:|.||:.::::.|.|..:.|.:.:.:|:|..  :.::|..|....|.|.    || :|.
  Rat   649 SMTVKGIVLEKELRLKETLKNQGVSNAVIWCTWFLDS--FSIMSMSIFLLTLFIM----HGRILH 707

  Fly   351 QTPWYILILVLFCYNCAAVAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFI-------LSNNLE 408
            .:..:||.|.|..:..|.:....:.:.||..|..|.....:::...|:|..:       ::.:|:
  Rat   708 YSDPFILFLFLLAFATATIMQCFLFSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLK 772

  Fly   409 GNIHALRYVSYALPNVVATLVIEFLIE-RESIVHITWEDSGYRLNYDGGHITVTASSWIFMLNAL 472
            ..:..|..|::....       |:|:. .|..:.:.|.:.| :...:|...:...|..:.:|:|.
  Rat   773 TTVSLLSPVAFGFGT-------EYLVRFEEQGLGLQWSNIG-KSPLEGDEFSFLLSMKMMLLDAA 829

  Fly   473 VYCAIGLYVDM--------------------WRGGD----RSGKKMKKPNTNASVQEDP-YHERG 512
            :|..:..|:|.                    |.||:    |..:.::|........||| |.|  
  Rat   830 LYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEEIEDPEYPE-- 892

  Fly   513 DSFTHQ---GQAIGVNSTKIYEVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLM 574
            |||..:   |...||                 .:|.|.|.|....|||::..:...|||::|..:
  Rat   893 DSFFERELPGLVPGV-----------------CVKNLVKVFEPGSRPAVDRLNITFYENQITAFL 940

  Fly   575 GHNGCGKSTLLKILAGLVEPSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFI 639
            ||||.||:|.|.||.||:.|:.|||:|...:|:....|....||:...|::|....||.:::.|.
  Rat   941 GHNGAGKTTTLSILTGLLPPTSGTVLIGGKDIEISLDAVRQSLGMCPQHNILFHHLTVAEHILFY 1005

  Fly   640 CRVKGL---HNNIEIDGQSNYFLNVLQIGGLKTKRIRTLTD------RDLCLVSICCAFVGNSPI 695
            .::||.   ...:|::.       :|:..||..||.....|      |.|   |:..||||:|.:
  Rat  1006 AQLKGRSWEEARLEMEA-------MLEDTGLHHKRNEEAQDLSGGMQRKL---SVAIAFVGDSKV 1060

  Fly   696 ILIDDVHSDLDKRTQSLVWNLINEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFL 760
            :::|:..|.:|..::..:|:|:.:.:|.||||:.::....|:.:.||:||:|.|.|.|:||..||
  Rat  1061 VVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1125

  Fly   761 KNMYGHGYRLTCV-KGKNYKRD-------------------------------------ELFGMM 787
            ||.:|.|:.||.| |.||.:..                                     ||..::
  Rat  1126 KNCFGTGFYLTLVRKMKNIQSQRCGCEGACSCTSKGFSARCPARVDEITEEQVLDGDVKELTDLV 1190

  Fly   788 NSYMPNMSIERDIGYKVTFVLENK-FEDQ-FPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLRFG 850
            ..::|...:...||.::.|:|.|| |:.: :..|..:|||.:..||:.||.|.||.:|||||:. 
  Rat  1191 YHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKV- 1254

  Fly   851 CEDNDQSGAF-----QSHE--------NAQVLLEEYYSTLAEANE----------KGR------- 885
            .||::....|     |..|        :|.|   |.:...|:|:.          ||:       
  Rat  1255 TEDSESGSKFVGGTQQKREHTGLRHPCSAPV---EKHRQHAQASHTCSPGQVDPPKGQPSPEPED 1316

  Fly   886 -----RTGWKLFFLHGRAVIYKRW---IAAHRHWIVLI-----FEVLAMAL-VAVCTFSSI---- 932
                 .||.:|...|.:|::.||:   :.:.:.::..|     |..||:.| :.|..|...    
  Rat  1317 PGIPFNTGARLILQHVQALLVKRFHHAVRSRKDFVAQIVLPATFVFLALMLSIIVPPFGEFPALT 1381

  Fly   933 ---FIYGKNYEL----EPLTFNLSQLHTV----DAFVELFSEEEDVKD----------------- 969
               ::||..:..    ||...:|..|..|    ..|.....:||.:.:                 
  Rat  1382 LHPWMYGHQFTFFSMDEPNNEHLEVLADVLLNRPGFGNRCLKEEWLPEYPCGNATSWKTPSVSPN 1446

  Fly   970 -MHAYYTELLYWYDAHVATLTK-------------------------------------NRH--- 993
             .|.:..:  .|..||.:...|                                     ||:   
  Rat  1447 ITHLFQKQ--KWTAAHPSPACKCSTREKLIMLPECPEGAGGLPPPQRIQRSTEVLQDLTNRNISD 1509

  Fly   994 ---NAYALLTQNQFTAH--VNSRYIFGATFDQKI------------------------------- 1022
               ..|..|.::...:.  ||.:...|.:...|:                               
  Rat  1510 YLVKTYPALIRSSLKSKFWVNEQRYGGISIGGKLPDIPISGEALVGFLSDLGQMMNVSGGPVTRE 1574

  Fly  1023 -----------------VTAWFNNIPLHSAPYALNVVHNAVARHLF-----DEEATIDVTLAPLP 1065
                             :..||||...|:....|||.|||:.|...     .||..|.|...||.
  Rat  1575 SSREMLDFLKHLETKDNIKVWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLN 1639

  Fly  1066 F-RTAINTFPPSSHTFGGCLAFGICFVLTFIWPAFAIYMITERGSLLKKQQFLAGVRVCSYWTFT 1129
            . :..::.....:.:....:|..:.|.::|:..:|.:|:|.||.:..|..||::||...:||...
  Rat  1640 LTKEQLSEITVLTTSIDAVVAICVIFAMSFVPASFVLYLIQERVTKAKHLQFISGVSPTTYWMTN 1704

  Fly  1130 VLYDLLFLLIFCACVVVMVALYENPNHD-----------VMLYGYISVTLMLGG---FWVILLAY 1180
            .|:|::...:....||.:...::...:.           :||||:..:.:|...   |.|...||
  Rat  1705 FLWDIMNYAVSAGLVVGIFIGFQKKAYTSTDNLPALVTLLMLYGWAVIPMMYPASFLFDVPSTAY 1769

  Fly  1181 LMASLCRNPCYGFLWLCGINSIGLVCFSQFYRTHPESMLLEPTFMAMYTVATVICKLF----MIY 1241
            :..| |.|     |:: ||||                           :..|.:.:||    |:.
  Rat  1770 VALS-CAN-----LFI-GINS---------------------------SAITFVLELFENNRMLL 1800

  Fly  1242 EFKLICMDPVVNFTSVEVFKCNSIPNCC----------------IKSNYG-TFTAG------IYH 1283
            .|.....:.::.|           |:.|                |.:.:| .::|.      |..
  Rat  1801 RFSATLRELLIVF-----------PHFCLGRGLIDLALSQAVTDIYAQFGEEYSANPFQWDLIGK 1854

  Fly  1284 DLVILTLLDIILLACLFVSEYHSIL--GFADCRLDTRTNESPDSNQESRAFPGILSNDTAALVDK 1346
            :||.:.:..::......:.::|..|  ..|:...:...:|..|..:|.:.   ::|..:     |
  Rat  1855 NLVAMAIEGVVYFLLTLLIQHHFFLTRWIAEPAREPVFDEDDDVAEERQR---VMSGGS-----K 1911

  Fly  1347 EHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVNET 1411
            ....:|||..: .|:......|.:         |...:...||..:.|.|.:||||..|::..:|
  Rat  1912 SDILKLNELTK-VYSGSSSPAVDR---------LCVGVHPGECFGLLGVNGAGKTTTFKMLTGDT 1966

  Fly  1412 KMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRELSEAL 1476
            .:.:|...|...|:.|:....::.:|||||.|::....|.||.||::|.|:|...:...:::...
  Rat  1967 TVTSGDATIAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPSKEIEKVANWG 2031

  Fly  1477 LRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQAM 1541
            ::.:||:...:|.....:.|..|:|..|.|:.|.|.|:.:|....|:||..:|::......:...
  Rat  2032 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALTGCPPLLLLDEPTTGMDPQARRMLWNTIVNIIRQ 2096

  Fly  1542 GSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKR-------KVNP 1599
            |.:.:.|..:..:.|.|..|..::::|....:..:......:..||.:.::.|.       .:||
  Rat  2097 GRAVVLTSHSMEECEALCTRLAIMVKGTFQCMGTIQHLKYKFGDGYIVTMKIKSPKDDLLPDLNP 2161

  Fly  1600 NVSMSRATWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMV-FVLPLGTTTFSEIFLTLRK 1663
                                  ...|.:..||.:|.. ||..||: |.:|  :::.:.||..|..
  Rat  2162 ----------------------VEQFFQGNFPGSVQR-ERHHSMLQFQVP--SSSLARIFQLLIS 2201

  Fly  1664 DAFEMNIEDYFITRNML----VGF---QIFTYD 1689
            ....:.||:|.:|:..|    |.|   |..|||
  Rat  2202 HKDSLLIEEYSVTQTTLDQVFVNFAKQQTETYD 2234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 45/225 (20%)
CcmA 541..848 CDD:224054 112/355 (32%)
ABC_subfamily_A 541..761 CDD:213230 76/228 (33%)
ABC2_membrane_3 911..>1189 CDD:289468 78/429 (18%)
ABC2_membrane <1080..>1188 CDD:304374 30/121 (25%)
ABC_subfamily_A 1370..1577 CDD:213230 51/206 (25%)
PRK14255 1371..1586 CDD:172743 51/214 (24%)
Abca4NP_001101191.1 rim_protein 1..2249 CDD:130324 437/2048 (21%)
ABC_subfamily_A 907..1126 CDD:213230 77/245 (31%)
ABC_subfamily_A 1915..2135 CDD:213230 56/229 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342276
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.750

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