DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and Abca8a

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_001268753.1 Gene:Abca8a / 303638 RGDID:1307333 Length:1615 Species:Rattus norvegicus


Alignment Length:1597 Identity:339/1597 - (21%)
Similarity:671/1597 - (42%) Gaps:320/1597 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 REGFIRLQKSVSESFLVLTSHKSLPTIQIRRFPITGR--EQDPLM---GNLNYGMPFIIIIGFLF 284
            |.||:.||.:::.:.:.:|::.|   :......:||:  :.|..:   |.......|:.||.| .
  Rat   174 RHGFVALQAAINSAIIEVTTNHS---VMEEMMSLTGKYIKIDSFIAQEGTTTDYFLFLCIIAF-S 234

  Fly   285 PAQLFVWQVVSEKQSQVRQFLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVL 349
            |...::...|:.::.:::.|:..|.:.:...::||   ||:|.:|..::...|..:.:...  .:
  Rat   235 PLTYYISAGVTRERKKMKAFMTVMGLRDSAFWLSW---GLLYGVIVFIVTLFLTFVVYSVQ--FV 294

  Fly   350 TQTPWYILILVLFCYNCAAVAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHAL 414
            ..|.:.::..:.|.|..:.::.:.:::...:.:.....|:..|.:         |....|.....
  Rat   295 FMTGFMMIFSLFFFYGLSLISLSFLMSVLLKKSFLTDLVVFFLTV---------SCGSLGFAALY 350

  Fly   415 RYVSYALPNVVATL-VIEFLIERESIVHITWEDSGYRLNYD---GGHIT-----VTASSWIFMLN 470
            ||:..:|..:::.| ...|::....::         ||:||   .||.|     |.|:.::...:
  Rat   351 RYLPVSLEWLLSLLSPFAFMLGMTQLL---------RLDYDLESSGHPTGNPNVVIATVFLLFFD 406

  Fly   471 ALVYCAIGLYVD--------------------MWRGGDRSGKKMKKPNTNASVQEDPYHERGDSF 515
            .:.|..:..|.:                    .|.|.:.:.:.:..       .|..|....|||
  Rat   407 GVFYLMLTFYFEKVLPGEYGRRHPPLFFLKSSFWTGQNPADRTVLD-------NERDYEFPDDSF 464

  Fly   516 THQGQAIGVNSTKIYEVEP----SHRRFKLKIKKLCKRFATNDR--PALNLFSWNVYENEVTVLM 574
                             ||    .|.:..::|:.|.|.:....:  .||...:.:||:.::|.::
  Rat   465 -----------------EPVSTDFHGKEVIRIRNLTKEYIQRSKRTEALKDLTLDVYKGQITAIL 512

  Fly   575 GHNGCGKSTLLKILAGLVEPSRGTVMISSHNI--QTERKAASMELGIAFGHDMLLTGFTVIDYLR 637
            ||:|.||||||.:|:||..|::|.|.|..:.:  .|:.::.|...|:....::.....||.:.||
  Rat   513 GHSGAGKSTLLNVLSGLCVPTKGWVTIHDNKLSEMTDLESISKLTGVCPQCNVQFDFLTVRENLR 577

  Fly   638 FICRVKGLHNNIEIDGQSNYFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVH 702
            ...::||:.   |:|.:....|..|::..::...::.|:......::...|.:|:..|.|:|:..
  Rat   578 LFAKIKGIQ---EVDNEVQRVLLALEMKNIQNTLVQNLSGGQKRKLTFGIAILGDPQIFLLDEPT 639

  Fly   703 SDLDKRTQSLVWNLINEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHG 767
            :.||..::..||||:.|.|:.|.::..:.....|:.:|||...:|.|:|:|.|:..|||..:|.|
  Rat   640 AGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISQGKLRCAGSSLFLKKKWGIG 704

  Fly   768 YRLTCVKGKNYKRDELFGMMNSYMPNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGV 832
            |.|:....:....:.:..::..::|:..:..:...|:.::|..:..::||.|..|| |....||:
  Rat   705 YHLSLQLSETCVHERITSLVKQHIPDSKLSAESEGKLNYILPLERTNKFPDLYRDL-ERCPDLGI 768

  Fly   833 VSFRIRDTSMEEIFLR----------FGCEDNDQSGAFQSHENAQVLLEEYYSTLAEANE-KGRR 886
            .::.:..|::.|:||:          .|..::.|:|.  :....::..|::.|.|.|.:: ||  
  Rat   769 ENYGVSVTTLTEVFLKLEGKSAIDSDIGETEDVQAGG--TRGPGRLDGEQFVSLLNEMSKTKG-- 829

  Fly   887 TGWKLFFLHGRAVIYKRWIAA--HRHWIVLIFEVLAMALVAVCTFSSIFIYGKN---YELEPLTF 946
             |..|::....||...|::..  .|..||::..:|.:.|:.:.:.:...:..::   :||.|.|:
  Rat   830 -GMALWWQQLCAVTRLRFLKLKYRRKSIVILILILGIGLLHILSANVHRLVNQSDYCWELSPHTY 893

  Fly   947 NLS-----QL------------HTVDAFVELFSEEEDVKDMHAY----YTELLYWYDAHVATLTK 990
            .|:     |:            ..:|.|:....::....::.|:    .||...:..|.:....:
  Rat   894 FLTPGQRPQMPLTNLLIINKTGEKIDDFLHSLEQQNIALEVDAFGTRNGTEDSQYNGAIIVAGGE 958

  Fly   991 NRHNAYALLTQNQFTAHVNSRYIFGATFDQKIVTAWFNNIPLHSAPYALNVVHNAVARHLFDEEA 1055
            ..:|         ||...|::                   .|:..|..:::|.||:. .||....
  Rat   959 KNYN---------FTLACNTK-------------------RLNCFPVLVDIVSNALL-GLFTPSV 994

  Fly  1056 TIDVTLAPLPFRTAINTFPPSSHTFGGCLAFGICFVLTFIWPAFAIYMITERGSLLKKQQFLAGV 1120
            .|....:..|..|....|....:.|...|      ::..:.|..::..|.:..:..:.|.:::|:
  Rat   995 HIQTDRSSFPEDTGYTQFYHLLYMFSWIL------LMACVPPYISMTSIDDYKNRAQFQLWISGL 1053

  Fly  1121 RVCSYWTFTVLYDLLFLLIFCACVV-VMVALYENPNHDVMLYG---YISVTLMLGGF--WVILLA 1179
            ...:||....|::   :.::.|.:: |.:|.|.:...:.|:..   :|.: |..||:  .||.:.
  Rat  1054 SPSAYWFGHALFE---IPVYSALILSVYIAFYFSAPPESMITTRDLFIQI-LYAGGYAMSVIFMM 1114

  Fly  1180 YLMASLCR---------NPCY---GFLWLCGINSIGLVCFSQFYRTHPESMLLEPTFM----AMY 1228
            |:::.:||         :.|:   .|:.||      |:.|..|          |.||:    |:.
  Rat  1115 YVISFICRKGRKNSGIWSLCFYIVSFISLC------LMLFKFF----------EDTFLFSSIALI 1163

  Fly  1229 TVATVI-CKL--FMIYEFKLICMDPVVNFTSVEVFKCNSIPNCCIKSNYGTFTAGIYHDLVILTL 1290
            .|.|:: |.|  |..:||..|.:.|...:|                  |..|.|..:|.|:.|  
  Rat  1164 PVVTLVGCTLLHFQNHEFPEISLYPERYYT------------------YLFFLAPFFHFLIFL-- 1208

  Fly  1291 LDIILLACLFVSEYHSILGFADCRLD------TRTN------ESPDSNQESRAFPGILSNDTAAL 1343
               .:|.||     ....|....|:|      :|::      |.|:...|..:...:.:.:....
  Rat  1209 ---FILRCL-----ERKFGMKTMRMDPVFRISSRSDRVFNNPEEPEGEDEDVSLERVRTANALTS 1265

  Fly  1344 VDKEH-----TSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTL 1403
            .|.:.     .|.|.:|.:.|...    .|.|.::....|::...:.|.|.:.:.|.|.:||:|.
  Rat  1266 ADFQEKPVIIASCLRKEYKGKKKC----FVLKGKKKIATRNISLCVRKGEVVGLLGHNGAGKSTS 1326

  Fly  1404 LKVVVNETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRI 1468
            :|::..|.|.:|||:.:...|..    .....:|||||:::|....|.||.|.|.|.::|...  
  Rat  1327 IKMITGEIKPSAGQVQLKGNSTG----DTPEFLGYCPQENALWQHMTVREHLEIFAAIKGMSK-- 1385

  Fly  1469 GRELSEALLRL---VGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRI 1530
             .:.:.|:.||   :.|.......|:..:.|..|:|.|..::||:|.::.:|....|:||.|:: 
  Rat  1386 -SDAAVAIARLADALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQ- 1448

  Fly  1531 ILMMTSTMQAMGSSFLYT----MLTG---LDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQ 1588
                 ...||:.::|..|    :||.   .:||.:..|..:::.|:|..|..:......:...|.
  Rat  1449 -----QMWQAIQATFANTERGALLTTHYMAEAEAVCDRVAIMVSGKLRCIGSIQHLKSKFGKEYL 1508

  Fly  1589 LEVRFK--RKVNP-NVSMSRATWNLINHFPMSP-NKKFSAFMEIKFPDAVLTIERDDSMVFVLPL 1649
            ||::.|  .:|.| |:.:.|.       ||.:. .:::|:.|..|.|       |:|    |.||
  Rat  1509 LEMKVKTPTQVEPLNMEIMRL-------FPQAARQERYSSLMVYKLP-------RED----VQPL 1555

  Fly  1650 GTTTFSEIFLTLRKDAFEMNIEDYFITRNMLVGFQIF 1686
                 |:.|..|.......::|:|.::::.|.  |:|
  Rat  1556 -----SQAFFKLETVKQSFDLEEYSLSQSTLE--QVF 1585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 39/228 (17%)
CcmA 541..848 CDD:224054 82/310 (26%)
ABC_subfamily_A 541..761 CDD:213230 62/223 (28%)
ABC2_membrane_3 911..>1189 CDD:289468 54/316 (17%)
ABC2_membrane <1080..>1188 CDD:304374 23/122 (19%)
ABC_subfamily_A 1370..1577 CDD:213230 58/216 (27%)
PRK14255 1371..1586 CDD:172743 57/224 (25%)
Abca8aNP_001268753.1 ABC2_membrane_3 27..416 CDD:289468 48/268 (18%)
DUF4149 267..354 CDD:290390 16/100 (16%)
ABC_subfamily_A 477..698 CDD:213230 62/223 (28%)
drrA 493..787 CDD:130256 80/297 (27%)
ABC2_membrane_3 <1005..1155 CDD:289468 33/175 (19%)
CcmA 1272..1591 CDD:224054 90/356 (25%)
ABC_subfamily_A 1279..1500 CDD:213230 62/237 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342192
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.850

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