DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and Abca8

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_038943365.1 Gene:Abca8 / 303637 RGDID:1307069 Length:1620 Species:Rattus norvegicus


Alignment Length:1861 Identity:391/1861 - (21%)
Similarity:732/1861 - (39%) Gaps:450/1861 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IRKFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNHRSDTVYDPI---DLDRSW 68
            ::|.||..|:..:..|...:..|::|           |...:.|..|.: |.:..:   ||.|  
  Rat    16 LQKNLLKKWRLRRETLMEWMSSLLLL-----------LFLCWYPHGHEA-TDFSSVPTKDLGR-- 66

  Fly    69 MQMVEKLEKARQVADTYNVKGNPFTPHLVIGWAPKRYGIFQAMMRRVQKQIE--PMTS----VGF 127
                         .|::...|      .:||:.|     ..:..|::.:::.  |..:    :|.
  Rat    67 -------------VDSFTQSG------FMIGYTP-----VTSTTRQIMEKVAAVPFMAGRKVLGL 107

  Fly   128 EDCEEMRE------SVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSELRM 186
            .|.|.:||      .||                  :|...||...:...|    :...:|.... 
  Rat   108 LDEENIRELTESHQEVI------------------RVIFSDTFSYHLKFQ----FGQRIPKSRE- 149

  Fly   187 LDGDFRMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFLVLTSHKSLPTI 251
             .||.. |:...:|.|......:             :.::||:.||.:::.:.:..|::.|   :
  Rat   150 -HGDHE-AHCFEMYEDVDCLISI-------------FWKKGFVALQAAINAAIIETTTNHS---V 196

  Fly   252 QIRRFPITGR--EQDPLM---GNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIG 311
            ..:...::|:  :..|.:   |.|.....|..|:.| .|...||...|:.::.:::..::.|.:.
  Rat   197 MEKLLSVSGKFMKIHPFVRQEGILTDFFIFTCIVSF-SPITYFVSISVARERKKMKGLMMMMGLR 260

  Fly   312 NLIHFVSWYLKGLIYE---MISSLIIAALLK-IRWDQDHGVLTQTPWYILILVLFCYNCAAVAFA 372
            :...::||   ||:|.   .:.:|.:|.::| :::      |..|.:.::..:...|..:.::.|
  Rat   261 DSAFWLSW---GLLYAGFVFVMALSLALVIKSVQF------LILTSFTVVFSLFLLYGLSMISLA 316

  Fly   373 IMVAAFFRNAL---NAVRVLTILW-------IMSYVPTFILSNNLEGNIHALRYVSYALPNVVAT 427
            .:::...|.::   ..|.:|||.|       :..|:|.     .||..:......::.|.  :|.
  Rat   317 FLMSVLVRKSVLTGLTVFLLTIFWGSLGFTALYRYLPA-----PLEWTLSLFSPFAFTLG--MAQ 374

  Fly   428 LVIEFLIERESIVHITWEDSGYRLNYD----------GGHITVTASSWIFMLNALVYCAIGLYVD 482
            |:                    |::||          |....:.|::::...:||:|.|:.:|.:
  Rat   375 LL--------------------RVDYDLNSNAPPDPAGSSNLIAATNFMLAFDALLYLALTMYFE 419

  Fly   483 M----WRGGDRSGKKMKKPN--------TNASVQE--DPYHERGDSFT------HQGQAIGV-NS 526
            .    ..|..||.....||:        .:..:::  ||....|.||.      |..::|.: |.
  Rat   420 KVLPNEYGHQRSPLFFLKPSFWVQPRKPAHVILEDGIDPAPLSGGSFEPVSPEFHGKESIRIRNI 484

  Fly   527 TKIYEVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGL 591
            :|.|:.:||      ||:            ||...:.::||.::|.|:||:|.||||||.||:||
  Rat   485 SKEYKGKPS------KIE------------ALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGL 531

  Fly   592 VEPSRGTVMISSHNIQTERKAASME-----LGIAFGHDMLLTGFTVIDYLRFICRVKGLHNNIEI 651
            ..|::|:|.|.::.:.   :.|.:|     .|:....::.....||.:.||...:::|:... |:
  Rat   532 SVPTKGSVTIYNNRLS---EMADLESVFRISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQ-EV 592

  Fly   652 DGQSNYFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNL 716
            :.:....|..|::..::....|.|:......::...|.:|:|.|.|:|:..:.||..::..||||
  Rat   593 EKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNL 657

  Fly   717 INEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLT------CVKG 775
            :.|.|:.|.::..:.....|:.:|||...:|.|:|||.|:..|||..:|.||.|:      ||. 
  Rat   658 LKERKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGSSLFLKKKWGVGYHLSLQLKEVCVP- 721

  Fly   776 KNYKRDELFGMMNSYMP--NMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIR 838
                 :.:..::..::|  .:|.||:.....|..||..:  :||.|...| ::...||:.|:.:.
  Rat   722 -----ENITSLVKQHIPEAKLSAERERTLVYTLPLETTY--RFPELCQSL-DSCPGLGIDSYGVS 778

  Fly   839 DTSMEEIFLRFGCE------DNDQSGAFQSHENAQV-LLEEYYSTLAEANEKGRRTGWKLFFLHG 896
            .|::.|:||:...:      :.|..|..|:..:... .|.|...||:...|..::||....:...
  Rat   779 MTTLNEVFLKLEGKSAIEEPEVDIVGEGQTERSGDTERLMEMEQTLSTLTETKKKTGSLALWRQQ 843

  Fly   897 RAVIYKRWIAAHRHWIVLIFEVLAMALVAVC--TFSSIFI----YGKNYELEPLTFNLS---QLH 952
            ...|.|..:...:|....:..||.:..||:|  .|.||.:    ....::|.|.::.|:   |.|
  Rat   844 TCAIAKARLLKLKHERKTLLSVLLVLGVALCPLLFESIKMKILQSAYTWDLSPHSYFLAPGQQPH 908

  Fly   953 --------------TVDAFVELFSEEEDVKDMHAYYTELLYWYDAHVATLTKNRHNAYALLT--- 1000
                          ::|.|::....:....::           ||..|....:..:....||   
  Rat   909 GMLTQLLIINKTEASIDDFIQSVERQNIALEV-----------DASGARDGTDDPSFNGALTVSG 962

  Fly  1001 ---QNQFTAHVNSRYIFGATFDQKIVTAWFNNIPLHSAPYALNVVHNAV-------ARHLFDEEA 1055
               .:.|:...|::                   .|:..|..::|:.|.:       ||...|...
  Rat   963 GEKNHSFSLACNTK-------------------RLNCFPVLMDVLSNGLLGMVKPSARIRTDRST 1008

  Fly  1056 -TIDVTLAPLPFRTAINTFPPSSHTFGGCLAFGICFVLTFIWPAF-AIYMITERGSLLKKQQFLA 1118
             .:|....||. :....||               ...||...|.: |:..:|:..:.:..|..::
  Rat  1009 YFVDEITNPLQ-QLGKTTF---------------WLTLTSACPPYIAMSSVTDYKNKVWFQLRVS 1057

  Fly  1119 GVRVCSYWTFTVLYDL-LFLLIFCACVVVMVALYENPNHDVMLYGYISVTLML----------GG 1172
            |:...:||....|.|: |:..:|     :.::|.:      .|.|:...||::          .|
  Rat  1058 GLFPSAYWFGQALVDIPLYCFVF-----LFMSLMD------YLLGFPDATLIVITHVLQIPCSVG 1111

  Fly  1173 FWV--ILLAYLMASLCRNPCYGFLWLCGINSIGL--VCFSQFYRTHPESMLLEPTFMAMYTV-AT 1232
            :.:  |.|.|:::.:.|.         |..:.|:  :||.........:|||:      :.| |.
  Rat  1112 YAISLIFLTYVISFISRK---------GKKNSGIWSLCFYIITMFSVVAMLLD------FNVDAI 1161

  Fly  1233 VICKLFMIYEFKLI-CMDPVVNFTSVEVFKCNSIPNCCIKSNYGTFTAGIYHDLVILTLLDIILL 1296
            :.|.:|::....|| |:     ..|:.:|.........|...:..|...:.|..:.     |..|
  Rat  1162 LYCIIFLLPPSTLIGCL-----ILSMHLFIYRISREESIVEPFLVFLIPLLHVFIF-----IFTL 1216

  Fly  1297 ACLFVSEYHSILGFADCRLD------TRTN------ESPDSNQESRAFPGILSNDTAALVDKEHT 1349
            .||   |:.  .|....|.|      .|.|      |.|:...|......:.:....|      :
  Rat  1217 RCL---EWK--FGKKTMRKDPIFRISPRNNDVHQNPEEPEGEDEDVQMERMRTASALA------S 1270

  Fly  1350 SRLNEEE-------RSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVV 1407
            :..:|:.       |.:||......:||.:.....|::.|.:.|.|.|.:.|.|.:||:|.||::
  Rat  1271 TSFDEKPVIVASCLRKEYAGKWKHCLSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMI 1335

  Fly  1408 VNETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQG----HRHRI 1468
            ..:||..|||:.:.    .:........:|||||:::|....|.:|.|.:.|.:.|    |....
  Rat  1336 SGDTKSTAGQVLLK----GSREGDALGFLGYCPQENALWPNLTVKEHLEVFATVLGLSKSHAAVT 1396

  Fly  1469 GRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGK----- 1528
            ...|::||    .|.......|:..:.|..|:|.|..::||:|.::.:|....||||.|:     
  Rat  1397 ITRLADAL----QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQ 1457

  Fly  1529 --RIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLEV 1591
              |.|:..|.....:.:.::      .:||.|..|..:|:.|:|..|..:......:...|.||:
  Rat  1458 AIRAIIKNTDRGALLTTHYM------AEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYLLEM 1516

  Fly  1592 RFKRKVNPNVSMSRATWNLINHFPMSP-NKKFSAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFS 1655
                ||.....:......::..||.:. .:::|..|..|.|     :|.      |.||     |
  Rat  1517 ----KVKTLEQVELLNTEVLRLFPQAARQERYSPLMVYKLP-----VED------VQPL-----S 1561

  Fly  1656 EIFLTLRKDAFEMNIEDYFITRNMLVGFQIF---TYDQHQD 1693
            :.|..|.|.....::|:|.::::.|.  |:|   :.:|..|
  Rat  1562 QAFFKLEKVKQTFDLEEYSLSQSTLE--QVFLELSKEQEMD 1600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 45/243 (19%)
CcmA 541..848 CDD:224054 89/319 (28%)
ABC_subfamily_A 541..761 CDD:213230 64/224 (29%)
ABC2_membrane_3 911..>1189 CDD:289468 57/328 (17%)
ABC2_membrane <1080..>1188 CDD:304374 22/121 (18%)
ABC_subfamily_A 1370..1577 CDD:213230 59/217 (27%)
PRK14255 1371..1586 CDD:172743 58/225 (26%)
Abca8XP_038943365.1 rim_protein <261..1597 CDD:130324 333/1531 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342195
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.850

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