DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and Abca3

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_006246101.1 Gene:Abca3 / 302973 RGDID:1307174 Length:1704 Species:Rattus norvegicus


Alignment Length:1869 Identity:443/1869 - (23%)
Similarity:799/1869 - (42%) Gaps:354/1869 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IRKFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFI-PVNHRSDTVYDPIDLDRSWMQ 70
            :|:..|:.|||:.|:....|..::.|.:|.||:.:.:.:|..| ..|..:.|||..        |
  Rat     4 LRQLRLLLWKNYTLKKRKVLVTVLELFLPLLFSGILIWLRLKIQSENVPNATVYPD--------Q 60

  Fly    71 MVEKLEKARQVADTYNVKGNPFTPHLVIGWAPKRYGIFQAMMRRVQKQ-IEPMTSVGF---EDCE 131
            .:::|    .:..::...|..:.    :.:.|......:.:...|::: :..|...||   :|.|
  Rat    61 HIQEL----PLFFSFPPPGGSWE----LAYVPSHSDAARTITEAVRREFMIKMRVHGFSSEKDFE 117

  Fly   132 E-MRESVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNIQPML------------NYTILLPSE 183
            : :|.....:.:.|.:.|            |.|.....:..|:.            ||.......
  Rat   118 DYVRYDNHSSNVLAAVVF------------EHTFNHSKDPLPLAVRYHLRFSYTRRNYMWTQTGN 170

  Fly   184 LRMLDGDFRMANWMTLYNDDPNTFVLTRLNQPYE-----GGFVGYVREGFIRLQKSVSESFLVLT 243
            |.:.:.:    .|.|     .:.|.|.....|.|     ||..||:||||:.:|.:|.::.:...
  Rat   171 LFLKETE----GWHT-----ASLFPLFPSPGPREPSSPDGGEPGYIREGFLAVQHAVDKAIMHYH 226

  Fly   244 SHKSLP------TIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVR 302
            ::.|..      |:..:|||......||.:..:.|.:|.::::.|.:.:...:..||.||:.:::
  Rat   227 ANASAHQLFQKLTVITKRFPFPPYISDPFLIAIQYQLPLLLMLSFTYTSLTIIRAVVQEKEKKLK 291

  Fly   303 QFLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCA 367
            :::..|.:.:.:|:.:|:|..|::.:|....:..|..::..:|..||:.:...:::..|.|:..:
  Rat   292 EYMRMMGLSSWLHWSAWFLMFLLFSLIVVSFMTLLFCVKVKKDIAVLSNSDPSLVLAFLLCFAIS 356

  Fly   368 AVAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLVIEF 432
            :::|:.||:.||..|..|..|...|:..:|.|.|.::........:.:.:|..|.||...:..:.
  Rat   357 SISFSFMVSTFFSKANMAATVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQL 421

  Fly   433 LIERESI-VHITWEDSGYRLNYDG----GHITVTASSWIFMLNALVYCAIGLYVD---------- 482
            :.:.|:. ..|.|.|....:|.|.    |.:.     .:.:|::::|..:..||:          
  Rat   422 IGKFEAKGTGIQWCDLLNPVNVDDDFCFGQVL-----GMLLLDSVLYGLVTWYVEAVFPGQFGVP 481

  Fly   483 ----------MWRGGDRS--GKKMKKPNTNASVQEDPYHERGD---SFTHQGQAIGVNSTKIYEV 532
                      .|.|..|:  ||:               .|.||   :|          .|:.:|.
  Rat   482 QPWYFFLMPSYWCGNPRTVVGKE---------------EEGGDPEKAF----------RTEYFEA 521

  Fly   533 EPSHRRFKLKIKKLCKRF--ATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPS 595
            ||......:|||.|.|.|  ...|:..:...:.|:||.::|||:||||.||:|.:.:|.||..|:
  Rat   522 EPEDLAAGIKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSMLTGLFPPT 586

  Fly   596 RGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKG-------------LHN 647
            .|...|..:.|..:.......||:...||:|....||.::|.|..::||             ||.
  Rat   587 SGHAYIRGYEISQDMVQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSVQKCPEEVKQMLHT 651

  Fly   648 ---NIEIDGQSNYFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRT 709
               ..:.|.:|. ||:    ||:|.|            ::|..|.:..|.::::|:..|.:|..:
  Rat   652 LGLEDKRDSRSK-FLS----GGMKRK------------LAIGIALIAGSKVLMLDEPTSGMDAVS 699

  Fly   710 QSLVWNLINEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVK 774
            :..:|:|:.::||.||::|.::....|:.:.||:||::.|||:|.|:..|||..||.||.:|.||
  Rat   700 RRAIWDLLQQQKSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVK 764

  Fly   775 GKNYKRDELFGMMNSYMPNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIRD 839
            ..:...:.:..:::.::||..:|...|.:::|:|..:...:|..|...||:..::||:.||....
  Rat   765 EPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLEKKQKELGIASFGASV 829

  Fly   840 TSMEEIFLRFG----------------------------CEDNDQSGAFQSHENAQVLLEEYYST 876
            |:|||:|||.|                            ..|::..|..........|:|| ...
  Rat   830 TTMEEVFLRVGKLVDTSMDIQAIQLPALQYQHERRASDWALDSNLCGVMDPTNGIGALIEE-EEV 893

  Fly   877 LAEANEKGRRTG--------WKLFFLHGRAVIYKRW--IAAHRHWIVLIFEVLAMALVAVCTFSS 931
            |.:.|     ||        |.: ||...|..::.|  :||.   |::....|.:||:|:...|.
  Rat   894 LVKLN-----TGLALHCQQFWAM-FLKKAAYSWREWRMVAAQ---ILVPVTCLTLALLAINYTSE 949

  Fly   932 IFIYGKNYELEPLTFNLSQLHTVDAFVELFSE----------EEDVKDMHAYYTELLYWYDAHVA 986
            ||      :..||..:|::..|.   |..||.          .|.::||                
  Rat   950 IF------DDPPLKLSLNEYGTT---VVPFSVPGTSRLGQQLSEHLRDM---------------- 989

  Fly   987 TLTKNRHNAYALLTQNQ----FTAHV-----NSRYIFGATF----DQKIVTAWFNNIPLHSAPYA 1038
             |...|.....:|...:    |.|.|     |.|.:...:|    ::.:|||.|||...||...|
  Rat   990 -LQAERQEPREVLGDLEEFLVFRASVEGGGFNERCLVATSFKDSGERTVVTALFNNQAYHSPATA 1053

  Fly  1039 LNVVHNAVARHLFDEEATIDVTLAPLP---FRTAINTFPPSSHTFGGCLAFGICFVLTFIWPAFA 1100
            |.:|.|.:.:.|....|:|:::..|.|   .:.|.:.|......|.  :|..:...:.|:...|:
  Rat  1054 LAIVDNLLFKLLCGPRASIEISNYPQPRSTLQVAKDQFNEGRKGFD--IALNLLIAMAFLASTFS 1116

  Fly  1101 IYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVM-----VALYENPNH--DV 1158
            |..::||....|..||::||.|.::|...:|:||:..|:....::|:     |..:....|  |:
  Rat  1117 ILAVSERAVQAKHVQFVSGVHVATFWLSALLWDLISFLVPSLLLLVVFRAFDVHAFTRDGHMADL 1181

  Fly  1159 MLYGYISVTLMLGGFWVILLAYLM------ASLCRNPCYGFLWLCGINSIGLVCFSQFYRTHPE- 1216
            :|      .|||.|:.:|.|.||:      ||........|..|.||.:..:|...:......| 
  Rat  1182 LL------LLMLYGWAIIPLMYLLSFFFSAASTAYTRLTIFNILSGIATFIVVTIMRIPAVKLEE 1240

  Fly  1217 -SMLLEPTFMAM--YTVATVICKLFMIYEFKLICMDPVV--------NFTSVEVFKCNSIPNCCI 1270
             |..|:..|:.:  :.:...:...:..||.:..|....|        |....|.|...|.|    
  Rat  1241 LSRTLDHVFLVLPNHCLGMAVSNFYENYETRRYCTSSEVATHYCKKYNIQYQENFYAWSTP---- 1301

  Fly  1271 KSNYGTF------TAGIYHDLVILTLLDIILLACL--FVSEYHSILGFADCRLDTRTNESPD--- 1324
              ..|.|      :.|||  |.:|.|::..||..|  ||..:......|:  |..||:..|:   
  Rat  1302 --GIGKFVTSMAASGGIY--LTLLFLIETNLLWRLRTFVCAFRRRWTLAE--LQNRTSVLPEDQD 1360

  Fly  1325 -SNQESRAFPGILSN--DTAALVDKEHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAK 1386
             :::.||.....|.:  ||..::::  .|:: .::|:...||          :|:    ...:.|
  Rat  1361 VADERSRVLVPSLDSMLDTPLIINE--LSKV-YDQRAPLLAV----------DRI----SLAVQK 1408

  Fly  1387 SECLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTP 1451
            .||..:.|.|.:||||..|::..|..:.:|..::..||:::...:..:.:|||||.|:|....|.
  Rat  1409 GECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKVRQRMGYCPQFDALLDHMTG 1473

  Fly  1452 RELLYIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICV 1516
            ||:|.::|.|:|...|:.....|..||.:.|.|..|:.|:..:.|..|:|....|::|.|.:|.:
  Rat  1474 REMLVMYARLRGIPERLIDACVENTLRGLLLEPHANKLVKTYSGGNKRKLSTGIALIGEPAVIFL 1538

  Fly  1517 DGVPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETE 1581
            |....|:||..:|::....:..:..|.:.:.|..:..:.|.|..|..::::||...:........
  Rat  1539 DEPSTGMDPVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1603

  Fly  1582 NYKSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMVFV 1646
            .:.|||.|:.:.:.:....|.                 ::|.||:::.||.:||..|..|.:.:.
  Rat  1604 KFGSGYSLQAKVRSEGKQEVL-----------------EEFKAFVDLTFPGSVLEDEHQDMVHYH 1651

  Fly  1647 LPLGTTTFSEIFLTLRKDAFEMNIEDYFITRNMLVGFQIFTYDQHQDNP 1695
            ||....:::::|..|.|...:..::||.:::..|.  |:|....|...|
  Rat  1652 LPGCDLSWAKVFGILEKAKEKYGVDDYSVSQISLE--QVFLSFAHLQPP 1698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 46/221 (21%)
CcmA 541..848 CDD:224054 100/324 (31%)
ABC_subfamily_A 541..761 CDD:213230 72/237 (30%)
ABC2_membrane_3 911..>1189 CDD:289468 79/316 (25%)
ABC2_membrane <1080..>1188 CDD:304374 33/120 (28%)
ABC_subfamily_A 1370..1577 CDD:213230 56/206 (27%)
PRK14255 1371..1586 CDD:172743 56/214 (26%)
Abca3XP_006246101.1 rim_protein <206..1699 CDD:130324 398/1630 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342211
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X215
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.950

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