DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and Abca13

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_038948786.1 Gene:Abca13 / 289797 RGDID:1305895 Length:5037 Species:Rattus norvegicus


Alignment Length:1850 Identity:402/1850 - (21%)
Similarity:714/1850 - (38%) Gaps:410/1850 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 IDLDRSWMQMVEKLEKARQVADTYNVKGNPFTPHLVIGWAPKRYGIFQ-----AMMRRVQKQIEP 121
            ||:|:    :.|.|:       ||..|.:....|:..|......||..     .::.|.| .:|.
  Rat  3363 IDMDK----LTEDLQ-------TYGQKLDKMFNHMEAGNFQFLGGILANLSSCVLLDRFQ-AVET 3415

  Fly   122 MTSVGFEDCEEMRESVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSELRM 186
            :.::..:..|.|:    :|...|.:.|:.|      :.......:...:.|.:.|||.......|
  Rat  3416 VDTLETKAHELMQ----QNSFLASIIFNSS------LGHRHIRSAPHKLPPHVTYTIRTNILYSM 3470

  Fly   187 LDGDFRMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFLVL-TSHKSL-P 249
            .....:..:|    ...|.       |.|..|....|:   |:.||..:..:.:|: |..:|| |
  Rat  3471 RTDMIKNPSW----KFHPQ-------NLPASGFKYNYI---FVPLQDMIERAIIVVQTGQESLEP 3521

  Fly   250 TIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLI 314
            |.|.:..|......|..:.|:.:..|.|:::.::......|.::|.|::.|:.:::..|.:..:|
  Rat  3522 TAQAQAAPYPCHTSDLFLNNVGFFFPLIMMLTWMVSVASMVRKLVYEREIQIEEYMRIMGLHPVI 3586

  Fly   315 HFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCAAVAFAIMVAAFF 379
            ||:||:|:.:....:||..:|.:||:     .|:...:..:|:.|.|..:..:||..:..::.||
  Rat  3587 HFLSWFLENMATLALSSAALALILKM-----SGIFMHSDAFIIFLYLLNFGVSAVMLSYFLSVFF 3646

  Fly   380 RNALNAVRVLTILWIMSYVP---TFILSNNLEGNIHALRYVSYALPNVVATL----------VIE 431
            ..|..|....::.:::|::|   ..:|.|.|          |:||..::..|          .|.
  Rat  3647 NKANTAALCTSLGYMISFLPYVVLLVLHNQL----------SFALQTLLCLLSTTAFGQGVFFIT 3701

  Fly   432 FLIERESIVHITWEDSGYRLNYDGGHITVTASSWIFMLNALVYCAIGLYV-DMWRGGDRSGKKMK 495
            ||..:|.  .|.|.:. ||....|| :|.....|:.:.::::|...|.|. ::..|....||...
  Rat  3702 FLEGQEE--GIQWGNM-YRAPEPGG-MTFGWVCWMILFDSILYFLGGWYFSNLVPGTFGLGKPWY 3762

  Fly   496 KP--------------------------------NTNASVQEDPYHERGDSFTHQGQAIGVNSTK 528
            .|                                |...|.|..|....|.|   .|.|: ::.||
  Rat  3763 FPFTASYWKSICGLMERRRCSLSSGLFFFNEDFGNKGLSQQNGPGEMEGGS---PGVAL-ISVTK 3823

  Fly   529 IYEVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVE 593
            .||   .|   |:.:::|...|               :.:::|.|:|.||.||:|::.:|.||..
  Rat  3824 EYE---DH---KVAVQELTLTF---------------HRDQITALLGTNGAGKTTIISMLMGLFP 3867

  Fly   594 PSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKG-LHNNIEIDGQSNY 657
            |:.||::::..|:||:......|||:...||:||...||.::|.....:|. ...|.|:..|.|.
  Rat  3868 PTSGTIIVNGKNLQTDFSKVREELGVCPQHDVLLDNLTVREHLMLFASIKAPWWTNKELRQQVNK 3932

  Fly   658 FLNVLQI------------GGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQ 710
            .|..:::            ||:|.|            :||..||:|.|..:::|:..|.:|..::
  Rat  3933 TLEEVELTQHQHKPARVLSGGMKRK------------LSIGIAFMGMSKTVVLDEPSSGVDPCSR 3985

  Fly   711 SLVWNLINEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVKG 775
            ..:||::.:.:..||||..::....||.::|.:|::..|.|:|......||..||.|..||..|.
  Rat  3986 RSLWNILLKYRKGRTIIFTTHHLDEAEVLSDHVAVLQQGRLRCYAPPAGLKETYGQGLTLTLSKQ 4050

  Fly   776 KNYKRDE-------LFGMMNSYMPNMSIERDIGYKVTFVLENKFEDQ--FPMLIDDLEENMQQLG 831
            .:....:       :..::..|:|...::...|.::|:.:. |..|:  |..|...|::|:|.|.
  Rat  4051 PSVLESQEPKDVARVTSLIQVYIPQAFLKDSNGGELTYTIP-KDADKTCFKGLCQALDQNLQHLH 4114

  Fly   832 VVSFRIRDTSMEEIFLRFGCEDNDQSGAFQSHENAQVLLEEYYSTLAEANEKG-----------R 885
            :..:.|.||::||:||....:.|.:|  :.:.:|          .|...|||.           .
  Rat  4115 LTGYGISDTTLEEVFLMLLQDTNKKS--YITPDN----------KLESQNEKPVGPCLRHCGSLM 4167

  Fly   886 RT----------GWKLFFLHGRAVIYKRWIAAHRHW--------IVLIFEVLAMALVAV----CT 928
            ||          |.:|......|::.||.:...|.|        :.::|..|||.|..|    .|
  Rat  4168 RTLPDSLPEPMGGCQLLLGQAGALLRKRLLHTLRAWKSTTSDLFLPVLFVALAMGLFMVQPLAIT 4232

  Fly   929 FSSIFIYGKNYELEPLTFNLSQLHTVD---AFVELFSEEEDVKDMHAYYTELLYWY--------- 981
            :..:.:...:||.....|..|..|..|   ..:..|.:::.|.. .|.:.....|:         
  Rat  4233 YPPLKLTPGHYETAEAYFFSSGNHDPDLTHVLLRRFGDQDPVCS-DAQWVNSSSWHRDPYSGPEF 4296

  Fly   982 -DAHVATLTKNRHNAYALLTQ------NQFTAHVNSRYI-------------FGATF-----DQK 1021
             |:.......|:......||.      ...:.:....|:             ||...     |.|
  Rat  4297 QDSCGCLKCPNKSAGAPYLTNCLGHTLLNLSGYDVEEYLLVPSAKPRLGGWSFGVQIPNEAEDVK 4361

  Fly  1022 IVTA--------WFNNIPLHSAPYALNVVHNAVARHLFDEEAT----IDVTLAPLPFRTAINTFP 1074
            ..|:        |:|....||.|..||.::|.:........|.    ..:||             
  Rat  4362 TNTSKPKTLAKVWYNQKGFHSLPSYLNHLNNLILWQNLPAHAADWRQYGITL------------- 4413

  Fly  1075 PSSHTFGGCL-------------AFGICFVLTF--IWPAFAIYMITERGSLLKKQQFLAGVRVCS 1124
             .||.:||.|             ...:|.||.|  :..:....::.:|.:..|:.|.::|:...:
  Rat  4414 -YSHPYGGALLNEDRILESIRQCGVALCIVLGFSILSASIGSSVVKDRVTGAKRLQHISGLGYRT 4477

  Fly  1125 YWTFTVLYDLLFLLI-FCACVVVMVALY-------ENPNHDVMLYGYISVTLMLGGFWVILLAYL 1181
            ||....|||:||.|: .|.||.::.|..       ||.....:|       |.|.|:.:|...||
  Rat  4478 YWLINFLYDMLFYLVSVCLCVAIIAAFQLTAFTFRENLAATALL-------LALFGYAMIPWMYL 4535

  Fly  1182 MASLCRNPCYGFLWLCGINSIGLVCFSQFYRTHPESMLLE--PTFMAMYTVATVICKLFMIYE-- 1242
            ::.:..:....|:....:|.|..:|          :||:.  |..:|:.:.|..:.|::.:.:  
  Rat  4536 ISRIFSSSDVAFISYISLNFIFGLC----------TMLMTTMPRLLAIISKAQSLQKIYDVLKWV 4590

  Fly  1243 ---FKLICM--------------DPVVNF---TSVEVFKCNSIPNCCIKSNYGTFTAGIYHDLVI 1287
               |...|:              |...||   :.|..|:.|             |...|:.:|.:
  Rat  4591 FTIFPQFCLGQGLIELCYNQIKYDLTHNFGIDSYVSPFEIN-------------FLGWIFVELTL 4642

  Fly  1288 ----LTLLDIILLA-CLFVSEYHSILGFADCRLDTRTNESPDSNQESRAFPGILSNDTAALVDKE 1347
                |.||.|:|.. ||.....||.|.    .:.....:.....::.|...|....|...|.:..
  Rat  4643 QGTFLLLLRILLHGDCLRWPRGHSALQ----DIVKPVKDIDVEKEQMRVLEGRTGGDMLVLCNLS 4703

  Fly  1348 HTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVNETK 1412
                      ..|..|..|      :...:..:...:::.||..:.|.|.:||:|..|::..||.
  Rat  4704 ----------KSYRGVCRG------KTTAVHGISLGISRGECFGLLGVNGAGKSTTFKILNGETP 4752

  Fly  1413 MNAGQLWIHDYS------VNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRE 1471
            .::|...|....      .:..:|..  ::|||||:|:|....|..|.|..:..|:|...:...|
  Rat  4753 PSSGYATIRTPQGDMVDLASAGKVGV--LIGYCPQQDALDELLTGWEHLQYYCRLRGIPKQNIPE 4815

  Fly  1472 LSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTS 1536
            ::..|:|.:.|....::.|...:.|..|:|..|.|::|.||::.:|...:|:||..|| .|..|.
  Rat  4816 VAADLVRRLHLELHVDKPVATYSGGTRRKLSTALALVGKPDILLLDEPSSGMDPCSKR-YLWQTI 4879

  Fly  1537 TMQAM-GSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKRKVNPN 1600
            |.:.. |.:.:.|..:..:.|.|..|..::::|....:.........:..||.::|         
  Rat  4880 TQEVRDGCAAVLTSHSMEECEALCTRLAIMVDGSFRCLGSPQHIKNRFGDGYTVKV--------- 4935

  Fly  1601 VSMSRATWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDA 1665
                   |   .|...|.....|..:::.||......:|.:.:.:.:........::|..|..:.
  Rat  4936 -------W---LHKEGSQPSAVSDCLKLHFPGIQFKGQRLNLLEYHVQKSWECLPDLFRVLETNK 4990

  Fly  1666 FEMNIEDYFITRNMLVGFQIFTYDQHQDNP 1695
            ..:.||.|.|::..|.  |:|.....:..|
  Rat  4991 SLLKIEHYSISQTALE--QVFVNFATEQTP 5018

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 53/229 (23%)
CcmA 541..848 CDD:224054 87/328 (27%)
ABC_subfamily_A 541..761 CDD:213230 61/232 (26%)
ABC2_membrane_3 911..>1189 CDD:289468 73/361 (20%)
ABC2_membrane <1080..>1188 CDD:304374 32/130 (25%)
ABC_subfamily_A 1370..1577 CDD:213230 53/213 (25%)
PRK14255 1371..1586 CDD:172743 53/221 (24%)
Abca13XP_038948786.1 rim_protein 1..>82 CDD:130324
rim_protein 3042..5029 CDD:130324 401/1849 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342292
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

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