DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and Abca17

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_001026807.1 Gene:Abca17 / 287112 RGDID:1560494 Length:1773 Species:Rattus norvegicus


Alignment Length:1809 Identity:415/1809 - (22%)
Similarity:761/1809 - (42%) Gaps:282/1809 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RKFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNHRSDTVYDPIDLDRSWMQMV 72
            :|..|:.|||..|:....|..::..|:|.||:.:.:.:|......::::|.|..:|:        
  Rat     5 KKLKLLLWKNFVLKKRKTLVTVLETLMPVLFSAIVLYLRLNSMPRNKANTNYPAVDV-------- 61

  Fly    73 EKLEKARQVADTYNVKGNPFTPHLVIGWAPKRYGIFQAMMRRVQKQIEPMTSVGFEDCEEMRESV 137
                   .:...| ....|......:.:.|.:    ...::.|.:.:|...:|.||.......|:
  Rat    62 -------SLLPVY-FHNYPLKSKFQLVYIPSK----SETLKAVTEVVEQTFAVDFEVLGFPSVSL 114

  Fly   138 IENGLFAGLCFDGSPF--VEDQVFEEDTLESYSNIQPMLNYTI---------LLPSELRMLDGDF 191
            .||.:..    |...|  :...||..|...|...:..::.|.:         :.|........| 
  Rat   115 FENYIIK----DPKSFYVLVGIVFHHDFNSSNEPLPLVVKYDLRFSYVQRNSISPPRHLFFQED- 174

  Fly   192 RMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFLV-------LTSHKSLP 249
             :..|.|.:...||.....|.....:||..||.:|||:.:|.:|.::.::       |...|:| 
  Rat   175 -IEGWCTAFLYPPNLSQAPREFSYADGGHPGYNKEGFLAIQHAVDKAIMLHHAPKAALDMFKNL- 237

  Fly   250 TIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLI 314
            .:.::|||.....|||.:..|....|.::::.|:....:....::.||:.:.::::..|.:.|.:
  Rat   238 QVSVQRFPSGSHIQDPFLVILQNEFPLLLMLSFICVELIITNSILLEKERKQKEYMYLMGLENWL 302

  Fly   315 HFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVL---TQTPWYILILVLFCYNCAAVAFAIMVA 376
            |:|:|::...:..:::   ::.:..:...:.:||.   ...|..|.|. |.|:..|.:.||.|::
  Rat   303 HWVAWFITFFLSALVT---VSGMTVLFCTKMNGVAVFRNSNPTLIFIF-LMCFAIATIFFAFMMS 363

  Fly   377 AFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLVIEF--LIERESI 439
            .||:.|.....:..|::..:|:|...::.:.....::.:.:|....||...:.:.|  |.|.|. 
  Rat   364 TFFQRAHVGTVIGGIVFFFTYLPYMYITFSYHQRTYSQKILSCLFSNVAMAMGVRFISLFEAEG- 427

  Fly   440 VHITWEDSGYRLNYDGGHITVTASSWIFMLNALVYCAIGLYVD--------------------MW 484
            ..|.|.:.|    ...|..:.|....:.:|::.:||.:...|:                    :|
  Rat   428 TGIQWRNMG----SVWGDFSFTQVLVMLLLDSFLYCLVAFLVESLFPRKIGMPKSWYIFAKCPLW 488

  Fly   485 RGGDRSGKKMKKPNTNASVQEDPYHERGDSFTHQGQAIGVNSTKI---YEVEPSHRRFKLKIKKL 546
            |      ||.........|..||.......|.....|..:|:.:|   |:|..:.|...:.:|.|
  Rat   489 R------KKSFPVIPPLLVIGDPEKTSKGDFLQDEPAGHINAIEIQHLYKVFYTGRSKCIAVKDL 547

  Fly   547 CKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPSRGTVMISSHNIQTERK 611
                           |.|:|:.::|||:||||.||:|:..:|.||:.||:|...|....|..:..
  Rat   548 ---------------SMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV 597

  Fly   612 AASMELGIAFGHDMLLTGFTVIDYLRFICRVKGL-----HNNIE-------IDGQSN---YFLNV 661
            .....:|....||:|...|||.|:|.|..::|||     |..||       ::.:.|   .||: 
  Rat   598 RIRKNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLS- 661

  Fly   662 LQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRTI 726
               ||:|.|            ::|..|.:..|.::::|:..|.:|..::..:|:|:.::|..||:
  Rat   662 ---GGMKRK------------LAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTV 711

  Fly   727 ILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVKGKNYKRDELFGMMNSYM 791
            :|.::....|:.:.||:||::.|||:|.||..|||..||.||.:|.:|......::|..::..::
  Rat   712 LLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQKYGAGYYMTIIKTPLCDTEKLAKVIYHHI 776

  Fly   792 PNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLRFGCEDNDQ 856
            ||..:|..||.::.|.|..|...:|..|..|||:...:||:.:|....|:|||:|:|. |:..|.
  Rat   777 PNAILESRIGEEMIFTLPKKAMPRFEALFADLEQRQTELGISTFGASVTTMEEVFIRV-CKLADP 840

  Fly   857 SGAFQSHENAQVLLEEYYS-----------------------TLAEANEKGRRTGWKLFFLHGRA 898
            |        ..||.|:..|                       :|:........||:.|......|
  Rat   841 S--------TNVLTEKRPSLRHLPRNHRVPVDRIKCLHSRIFSLSSDQPIRLNTGFSLLCQQFYA 897

  Fly   899 VIYKRWIAAHRHWIVLIFEVLAMALVAVCTFSSIFIYGKNYELE-----PLTFNLSQLHTVDAFV 958
            ::.|:...:.|:|::::...:.:.||.:....|.|    |::|.     ||...|....  ...|
  Rat   898 MLLKKVAFSRRNWMLVLSVQILLPLVIIMLSLSFF----NFKLRKLDNVPLELTLQTYG--QTIV 956

  Fly   959 ELFSEEEDVKD--MHAYYTELLYWYDAHVATLTKNRHNAYALLTQNQFTAHVNSRYIFGATF--- 1018
            ..|..|....|  :...:.::|. ....|....:.....:.|....:.....:..|:..|:|   
  Rat   957 PFFIAENSRLDPQLSDNFVKMLV-AAGQVPLRIQGSVENFLLKKAKEAPEDFDKLYVVAASFEDV 1020

  Fly  1019 -DQKIVTAWFNNIPLHSAPYALNVVHNAVARHLFDEEATIDVTLAPLPFRTAINTFPPSSHTF-- 1080
             |...|.|.|||...||...||.:|.|.:.:.|....|:|..|..|.| :||:..    |.|.  
  Rat  1021 NDHTTVKALFNNQAYHSPSLALALVDNVLFKLLSGANASITTTNYPQP-QTAMEL----SETILY 1080

  Fly  1081 ----GGCLAFGICFVLTFIWPAFAIYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFC 1141
                |..|.....|.:.|:..:|:|..:.|:....|..|||:||.:.::|...:|:||:..|:..
  Rat  1081 QGPKGHYLVVNFLFGIAFLSSSFSILTVGEKSIKSKNLQFLSGVSMAAFWLSALLWDLISFLVPT 1145

  Fly  1142 ACVVVMVALYENP--NHDVMLYGYISVTLMLGGFWVILLAYLMASLCRNPCYGFLWLCGINSIGL 1204
            ..:|::...|:..  .|...:...:.: :||.|:.:|.|.|.::...:.|        |...:.|
  Rat  1146 LLLVLVFFWYKEEAFAHPQSIPAVVLI-MMLYGWAIIPLVYTVSFSFKTP--------GSGCVKL 1201

  Fly  1205 VCFSQFYRTHPESML----------------LEPTFMAM--YTVATVICKLFMIYEFKLICMDPV 1251
            |....|....|..::                |:..|:..  :.:......|:..:|.|..|    
  Rat  1202 VAMLTFLSISPVVLVTVTSEIDLGYTELSDTLDHIFLIFPGHCLGMAFSNLYYNFEIKKFC---- 1262

  Fly  1252 VNFTSVEVFKCNSIPNCCI--KSNYGTFTAGIYHDLVILTLLDIILLACLFVSEYHSILGFADCR 1314
             |..::....||.:....:  |:.|...:.||...|..|.:|..:.:..||::|.:     |.|.
  Rat  1263 -NAKNLSDIDCNDVLEGYVVQKNIYAWESLGIGKYLTALAILGPVYITLLFLTEAN-----AFCA 1321

  Fly  1315 LDTRTNESPDSNQESRAFPGILSNDTAALVDKEHTSRLNEEERSKY--------AAVGIGIVSKY 1371
            |..|.: .....|:.|    :|.|.|.|    |....|.|.|..||        :.:.:..:||.
  Rat  1322 LKARLS-GFFCKQKLR----MLLNVTGA----EDEDVLEEAENIKYHLDTLIKKSPLVVKELSKV 1377

  Fly  1372 RRNRV----LRDLDFTLAKSECLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYSVNTHRVQC 1432
            .:.:|    :..:.|.:.:.||..:.|.|.:|||::..::..|..:.:|..::..:::.|...:.
  Rat  1378 YKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKV 1442

  Fly  1433 YRMVGYCPQKDSLPSEFTPRELLYIHAMLQG----HRHRIGRELSEALLRLVGLTPCWNRSVRMC 1493
            .:.:||||:.|:|.:..|.||:|.:||.::|    |.......:.|.||..|..    ::.|:..
  Rat  1443 QQWIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYA----DKLVKTY 1503

  Fly  1494 TTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAERL 1558
            :.|..|.|..|.|:||.|.:|.:|....|:||..:|::......::..|.:.:.|..:..:.|.|
  Rat  1504 SDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEAL 1568

  Fly  1559 SLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKKFS 1623
            ..|..::::||...:.........:.|||.|:.:.:||           |.      ....::|.
  Rat  1569 CTRLAIMVQGQFKCLGSPQHLKSRFGSGYSLQAKVRRK-----------WQ------QQMLEEFK 1616

  Fly  1624 AFMEIKFPDAVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNIEDYFITR 1677
            ||:::.||.:.|..|....:.:.||....:::::|..:.:...:..:|||.|::
  Rat  1617 AFVDLTFPGSSLEDEHQSMVQYYLPGQNLSWAKVFGIMEQAKKDYVLEDYSISQ 1670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 45/221 (20%)
CcmA 541..848 CDD:224054 100/321 (31%)
ABC_subfamily_A 541..761 CDD:213230 70/234 (30%)
ABC2_membrane_3 911..>1189 CDD:289468 69/296 (23%)
ABC2_membrane <1080..>1188 CDD:304374 27/115 (23%)
ABC_subfamily_A 1370..1577 CDD:213230 53/214 (25%)
PRK14255 1371..1586 CDD:172743 52/222 (23%)
Abca17NP_001026807.1 ABC2_membrane_3 <262..464 CDD:289468 41/210 (20%)
ABC_subfamily_A 525..746 CDD:213230 74/251 (29%)
drrA 543..834 CDD:130256 100/321 (31%)
ABC2_membrane_3 913..1255 CDD:289468 77/362 (21%)
CcmA 1369..1682 CDD:224054 75/323 (23%)
ABC_subfamily_A 1369..1590 CDD:213230 54/224 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1690..1773
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342203
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X215
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.850

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