DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and Abca3

DIOPT Version :10

Sequence 1:NP_608444.2 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_038883.2 Gene:Abca3 / 27410 MGIID:1351617 Length:1704 Species:Mus musculus


Alignment Length:1883 Identity:431/1883 - (22%)
Similarity:796/1883 - (42%) Gaps:382/1883 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IRKFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFI-PVNHRSDTVYDPIDLDRSWMQ 70
            :|:..|:.|||:.|:....|..::.|.:|.||:.:.:.:|..| ..|..:.|||..        |
Mouse     4 LRQLTLLLWKNYTLKKRKVLVTVLELFLPLLFSGILIWLRLKIQSENVPNATVYPD--------Q 60

  Fly    71 MVEKL----------------------EKARQVADTYNVKGNPFTPHLVIGWAPKRYGIFQAMMR 113
            .:::|                      :.||.:.:|  ||........|.|::.::         
Mouse    61 SIQELPLFFSFPPPGGTWELAYVPSHSDAARTITET--VKREFMIKMRVHGFSSEK--------- 114

  Fly   114 RVQKQIEPMTSVGFEDCEEMRESVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTI 178
                        .|||  .:|.....:.:.|.:.|:               .|:::.|..|  .:
Mouse   115 ------------DFED--YIRYDNHSSSVLAAVVFE---------------HSFNHSQDPL--PL 148

  Fly   179 LLPSELRMLDGDFRMANWMTLYNDDPNTFV-------LTRL---------NQPY--EGGFVGYVR 225
            .:...||.   .:...|:|  :....|.|:       .|.|         .:|.  :||..||:|
Mouse   149 AVKYHLRF---SYTRRNYM--WTQTGNIFLKETEGWHTTSLFPLFPSPGPREPSSPDGGEPGYIR 208

  Fly   226 EGFIRLQKSVSESFLVLTSHKSLPTIQI--------RRFPITGREQDPLMGNLNYGMPFIIIIGF 282
            |||:.:|.:|.::  ::..|.:....|:        :|||......||.:..:.|.:|.::::.|
Mouse   209 EGFLAMQHAVDKA--IMRYHANTSAQQLFQKLMVITKRFPFPPYISDPFLIAIQYQLPLLLMLSF 271

  Fly   283 LFPAQLFVWQVVSEKQSQVRQFLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHG 347
            .:.:...:..||.||:.::::::..|.:.:.:|:.:|:|...::.:|....:..|..::..:|..
Mouse   272 TYTSLTIIRAVVQEKEKKLKEYMRMMGLNSWLHWSAWFLMFFLFFLIVVSFMTLLFCVKVKKDIA 336

  Fly   348 VLTQTPWYILILVLFCYNCAAVAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIH 412
            ||:.:...:::..|.|:..::::|:.||:.||..|..|..|...|:..:|.|.|.::........
Mouse   337 VLSNSDPSLVLAFLLCFAISSISFSFMVSTFFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMTL 401

  Fly   413 ALRYVSYALPNVVATLVIEFLIERESI-VHITWEDSGYRLNYDG----GHITVTASSWIFMLNAL 472
            :.:.:|..|.||...:..:.:.:.|:. ..|.|.|....:|.|.    |.:.     .:.:|::.
Mouse   402 SQKLLSCLLSNVAMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVL-----GMLLLDSA 461

  Fly   473 VYCAIGLYVD--------------------MWRGGDRS--GKKMKKPNTNASVQEDPYHERGDSF 515
            :|..:..||:                    .|.|..|:  ||:.:..:...:::.:         
Mouse   462 LYGLVTWYVEAVFPGQFGVPQPWHFFLMPSYWCGNPRTVVGKEEEGSDPEKALRNE--------- 517

  Fly   516 THQGQAIGVNSTKIYEVEPSHRRFKLKIKKLCKRF--ATNDRPALNLFSWNVYENEVTVLMGHNG 578
                         .:|.||......:|||.|.|.|  ...|:..:...:.|:||.::|||:||||
Mouse   518 -------------YFEAEPEDLVAGIKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNG 569

  Fly   579 CGKSTLLKILAGLVEPSRGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVK 643
            .||:|.:.:|.||..|:.|...|..:.|..:.......||:...||:|....||.::|.|..::|
Mouse   570 AGKTTTMSLLTGLFPPTSGHAYIHGYEISQDMAQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLK 634

  Fly   644 GLHNNIEIDGQSNYFLNVLQI------------GGLKTKRIRTLTDRDLCLVSICCAFVGNSPII 696
            ||... :...:....|::|.:            ||:|.|            :||..|.:..|.::
Mouse   635 GLSLQ-KCPEEVKQMLHILSLEDKRDLRSKFLSGGMKRK------------LSIGIALIAGSKVL 686

  Fly   697 LIDDVHSDLDKRTQSLVWNLINEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLK 761
            ::|:..|.:|..::..:|:|:.::||.||::|.::....|:.:.||:||::.|||:|.|:..|||
Mouse   687 MLDEPTSGMDAVSRRAIWDLLQQQKSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLK 751

  Fly   762 NMYGHGYRLTCVKGKNYKRDELFGMMNSYMPNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEEN 826
            ..||.||.:|.||..:...:.:..:::.::||..:|...|.:::|:|..:...:|..|...||:.
Mouse   752 QKYGAGYHMTLVKEPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLEKK 816

  Fly   827 MQQLGVVSFRIRDTSMEEIFLRFG----------------------------CEDNDQSGAFQSH 863
            .::||:.||....|:|||:|||.|                            ..|::..|.....
Mouse   817 QKELGIASFGASVTTMEEVFLRVGKLVDTSMDIQAIQLPALQYQHERRASDWALDSNLCGVMDPT 881

  Fly   864 ENAQVLLEEYYSTLAEANEKGRRTG--------WKLFFLHGRAVIYKRW--IAAHRHWIVLIFEV 918
            .....|:|| ...|.:.|     ||        |.: ||...|..::.|  :||.   :::....
Mouse   882 NGIGALIEE-EEVLVKLN-----TGLALHCQQFWAM-FLKKAAYSWREWKMVAAQ---VLVPLTC 936

  Fly   919 LAMALVAVCTFSSIF----------IYGKN---YELEPLTFNLSQLHTVDAFVELFSEEEDVKDM 970
            |.:||:|:...|.||          .||:.   :.: |.|..|:|..:.:....|.:|.::.:::
Mouse   937 LTLALLAIHYTSEIFDDPLLKLSLNEYGRTVVPFSV-PGTSRLAQQLSENLRDMLQAERQEPREV 1000

  Fly   971 HAYYTELLYWYDAHVATLTKNRHNAYALLTQNQFTAHV-----NSRYIFGATFDQK----IVTAW 1026
            .....|.|.                        |.|.|     |.|.:...:|..:    :|||.
Mouse  1001 LGDLEEFLV------------------------FRASVEGGGFNERCLVATSFKDRGELTVVTAL 1041

  Fly  1027 FNNIPLHSAPYALNVVHNAVARHLFDEEATIDVTLAPLPFRTAINTFPPSSHTF-----GGCLAF 1086
            |||...||...||.:|.|.:.:.|...:|:|:::..|.|    .||...:...|     |..:|.
Mouse  1042 FNNQAYHSPATALAIVDNLLFKLLCGPQASIEISNYPQP----RNTLQVAKDHFNEGRKGFDIAL 1102

  Fly  1087 GICFVLTFIWPAFAIYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVM---- 1147
            .:...:.|:...|:|..::||....|..||::||.|.::|...:|:||:..|:....::|:    
Mouse  1103 NLLIAMAFLASTFSILAVSERAVQAKHVQFVSGVHVATFWFSALLWDLISFLVPSLLLLVVFQAF 1167

  Fly  1148 -VALYENPNH--DVMLYGYISVTLMLGGFWVILLAYLM------ASLCRNPCYGFLWLCGINSIG 1203
             |..:....|  |::|      .|||.|:.:|.|.|||      ||........|..|.||.:..
Mouse  1168 NVHAFTRDGHMADLLL------LLMLYGWAIIPLMYLMSFFFSAASTAYTRLTIFNILSGIATFI 1226

  Fly  1204 LVCFSQFYRTHPE--SMLLEPTFMAM--YTVATVICKLFMIYEFKLICMDPVV--------NFTS 1256
            :|...:......|  |..|:..|:.:  :.:...:...:..||.:..|....:        |...
Mouse  1227 MVTIMRIPAVKLEELSRTLDHVFLVLPNHCLGMAVSNFYENYETRRYCTSSELAAHYCKKYNIQY 1291

  Fly  1257 VEVFKCNSIPNCCIKSNYGTF------TAGIYHDLVILTLLDIILLACL--FVSEYHSILGFADC 1313
            .|.|...|.|      ..|.|      :.|||  |.:|.|::..||..|  |:..:......|: 
Mouse  1292 QESFYAWSTP------GVGKFVTSMAASGGIY--LTLLFLIETNLLWRLRTFICAFRRRWTLAE- 1347

  Fly  1314 RLDTRTNESPD----SNQESRAFPGILSN--DTAALVDKEHTSRLNEEERSKYAAVGIGIVSKYR 1372
             |..||:..|:    :.:.||.....|.:  ||..::::  .|:: .::|:...||         
Mouse  1348 -LQNRTSVLPEDQDVAEERSRILVPSLDSMLDTPLIINE--LSKV-YDQRAPLLAV--------- 1399

  Fly  1373 RNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYSVNTHRVQCYRMVG 1437
             :|:    ...:.|.||..:.|.|.:||||..|::..|..:.:|..::..||:::...:..:.:|
Mouse  1400 -DRI----SLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKVRQRMG 1459

  Fly  1438 YCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLY 1502
            ||||.|:|....|.||:|.::|.|:|...|:.....|..||.:.|.|..|:.|:..:.|..|:|.
Mouse  1460 YCPQFDALLDHMTGREMLVMYARLRGIPERLINACVENTLRGLLLEPHANKLVKTYSGGNKRKLS 1524

  Fly  1503 FAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLE 1567
            ...|::|.|.:|.:|....|:||..:|::....:..:..|.:.:.|..:..:.|.|..|..::::
Mouse  1525 TGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQ 1589

  Fly  1568 GQLWMIRPMDTETENYKSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPNKKFSAFMEIKFPD 1632
            ||...:.........:.|||.|:.:.:.:...:..                 ::|.||:::.||.
Mouse  1590 GQFKCLGSPQHLKSKFGSGYSLQAKVRSEGKQDAL-----------------EEFKAFVDLTFPG 1637

  Fly  1633 AVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNIEDYFITRNMLVGFQIFTYDQHQDNP 1695
            ::|..|..|.:.:.||....:::::|..|.|...:..::||.:::..|.  |:|....|...|
Mouse  1638 SILEDEHQDMVHYHLPGCDLSWAKVFGILEKAKEKYGVDDYSVSQISLE--QVFLSFAHLQPP 1698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_608444.2 rim_protein <223..1689 CDD:130324 382/1618 (24%)
ABC_subfamily_A 541..761 CDD:213230 70/233 (30%)
Abca3NP_038883.2 rim_protein 1..>43 CDD:130324 11/38 (29%)
rim_protein <206..1699 CDD:130324 384/1626 (24%)

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