DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1494 and Abca8b

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:NP_038879.2 Gene:Abca8b / 27404 MGIID:1351668 Length:1620 Species:Mus musculus


Alignment Length:1859 Identity:386/1859 - (20%)
Similarity:739/1859 - (39%) Gaps:464/1859 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IRKFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIPVNH-RSDTVYDPI-DLDRSWM 69
            ::|.||..|:..:..|...:..|::|           |..::.|..| .:|....|. ||.|   
Mouse    16 LQKNLLKKWRLKRESLMEWVSSLLLL-----------LFLYWYPHGHGATDLSSVPTKDLGR--- 66

  Fly    70 QMVEKLEKARQVADTYNVKGNPFTPHLVIGWAPKRYGIFQAMMRRV-------QKQIEPMTSVGF 127
                        .|::...|      .:||:.|.. .:.|.:|.:|       .|::     :|.
Mouse    67 ------------VDSFRQSG------FMIGYTPVT-SMTQQIMEKVAATPFMADKKV-----LGL 107

  Fly   128 EDCEEMRESVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSELRMLDGDFR 192
            .|.|.::|....:.....:.|            .||...:...|    :...:|:...:.|.:  
Mouse   108 LDEENIKELTESHAEIIRVIF------------SDTFSYHLKFQ----FDQRIPTSRELRDHN-- 154

  Fly   193 MANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFLVLTSHKSLPTIQIRRFP 257
             |:...|| :|.|..:..            :.:|||:.||.:::.:.:..|::.|   :......
Mouse   155 -AHCDGLY-EDVNCLIAI------------FWKEGFVALQAAINAAIIETTTNHS---VMEELLS 202

  Fly   258 ITGR--EQDPLM---GNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLIHFV 317
            ::|:  :..|.:   |.|.....|..||.| .|...:|...|:.::.:::..::.|.:.:...::
Mouse   203 VSGKFMKIHPFVRQEGILTDFFIFTCIISF-SPITYYVSINVARERKRMKGLMMMMGLRDPAFWL 266

  Fly   318 SWYLKGLIYE---MISSLIIAALLKIRWDQDHGVLTQTPWYILILVLF-CYNCAAVAFAIMVAAF 378
            ||   ||:|.   .|.:|.:|.::|   .....:||.   ::::..|| .|..:.:..|.:::|.
Mouse   267 SW---GLLYAGFVFIMALSLALVIK---SVQFFILTS---FMVVFSLFLLYGLSMITLAFLMSAL 322

  Fly   379 FRNAL---NAVRVLTILW-------IMSYVPT---FILSNNLEGNIHALRYVSYALPNVVATLVI 430
            .|.::   .:|.:|||.|       :..|:|.   :.||          .:..:|....:|.|: 
Mouse   323 VRKSVLTGLSVFLLTIFWGSLGFTSLYRYLPAPVEWTLS----------LFSPFAFTLGMAQLL- 376

  Fly   431 EFLIERESIVHITWEDSGYRLNYD----------GGHITVTASSWIFMLNALVYCAIGLYVD--- 482
                               |::||          .|...:.|::::.:.:|.:|.|:.:|.:   
Mouse   377 -------------------RVDYDLNSNAPPDPASGSNLIIATNFMLVFDAFLYLALMMYFEKVL 422

  Fly   483 -----------------MWRGGDRSGKKMKKPNTNASVQE--DPYHERGDSFTHQGQAIGVNSTK 528
                             .|       .:.:|| .:..:::  ||....||||.            
Mouse   423 PNEYGHQHSPLFFLKSSFW-------LQTRKP-AHVILEDGIDPVPSSGDSFE------------ 467

  Fly   529 IYEVEPS-HRRFKLKIKKLCKRF--ATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAG 590
              .|.|. |.:..::|:.:.|.:  ..|...||...:.::||.::|.::||:|.||||||.||:|
Mouse   468 --PVSPEFHGKESIRIRNISKEYKGKPNKIEALKDLTLDIYEGQITAVLGHSGAGKSTLLNILSG 530

  Fly   591 LVEPSRGTVMISSHNIQTERKAASME-----LGIAFGHDMLLTGFTVIDYLRFICRVKGLHNNIE 650
            |..|::|:|.|.::|:.   :.|.:|     .|:....::.....||.:.||...:::|:... :
Mouse   531 LSVPTKGSVTIYNNNLS---EMADLENILRIAGVCPQANVQFDFLTVRENLRLFAKIRGIPPQ-D 591

  Fly   651 IDGQSNYFLNVLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWN 715
            ::.:....|..|::..::....:.|:......::...|.:|:|.|.|:|:..:.||..::..|||
Mouse   592 VEKEVQRVLLELEMKNIQNILAQNLSGGQKRKLTFGIAILGDSQIFLLDEPTAGLDPFSRHRVWN 656

  Fly   716 LINEEKSKRTIILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLT------CVK 774
            |:.|.::.|.::..:.....|:.:|||...:|||.|||.|:..|||..:|.||.|:      ||.
Mouse   657 LLKERRADRVVLFSTQFMDEADILADRKVFISNGRLKCAGSSLFLKKKWGVGYHLSLQLKEVCVP 721

  Fly   775 GKNYKRDELFGMMNSYMPNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIRD 839
                  :.:..::..::|...:..:...|:.:.|..:...:||.|...| ::...||:.::.:..
Mouse   722 ------ENITSLVKQHIPAAKLSAEGEGKLLYTLPLETTYRFPELCQSL-DSCPGLGIENYGVSM 779

  Fly   840 TSMEEIFLRF-GCEDNDQS-----GAFQSHENAQV-LLEEYYSTLAEANEKGRRTGWKLFFLHGR 897
            |::.|:||:. |....|:.     |..|:..:... .|.|...||:...|..:..|..|:.....
Mouse   780 TTLNEVFLKLEGKASIDEPEVDIVGEGQTERSGDTERLMEMEQTLSSLRETEKTDGMALWRQQTC 844

  Fly   898 AVIYKRWIAAHRHWIVLIFEVLAMALVAVCTF------SSIFIYGKNYELEPLTF---------- 946
            |:...|.:.. :|....:..||.:.:|.:|.|      :.|......:||.|..:          
Mouse   845 AIAKVRLLKL-KHERKTLLSVLLILVVGICPFLFENISTKIRQSSYTWELSPHDYFLAPGQQPQG 908

  Fly   947 NLSQL-------HTVDAFVELFSEE-----------EDVKDMHAYYTELLYWYDAHVATLTKNRH 993
            .|:||       .::|.|:.....:           .|..|..:|...|:      |:...||..
Mouse   909 MLTQLLIINKTEASIDDFIHSVERQNIALEVDASGTRDGTDDPSYNGALI------VSGNEKNHS 967

  Fly   994 NAYALLTQNQFTAHVNSRYIFGATFDQKIVTAWFNNIPLHSAPYALNVVHNAV-------ARHLF 1051
            .::|..|:.                             |:..|..::::.|.:       ||...
Mouse   968 FSFACNTKR-----------------------------LNCFPVLMDILSNGLLGMVKPSARIQT 1003

  Fly  1052 DEEA-TIDVTLAPLP--FRTAINTFPPSSHTFGGCLAFGICFVLTFIWPAF-AIYMITERGSLLK 1112
            |... .:|.|:.||.  ::||                  ...:||...|.: |:..:|:..:...
Mouse  1004 DRSTYLMDETIHPLEDLWKTA------------------FWLILTSACPPYIAMSSVTDYKNRAW 1050

  Fly  1113 KQQFLAGVRVCSYWTFTVLYDL---LFLLIFCACVVVMVALYENPNHDVMLYGYISVTLMLG--- 1171
            .|..::|:...:||....:.|:   .|:.:|.:   :|..|:..|:   .::..||..:.:.   
Mouse  1051 FQLRVSGLFPSAYWVGQAMVDIPLYCFVFLFMS---LMDYLFRFPD---TMFSIISHVIQIPCSV 1109

  Fly  1172 GFWV--ILLAYLMASLCRNPCYGFLWLCGINSIGLVCFSQFYRTHPESMLLEPTFMAMYTVATVI 1234
            |:.:  |.|.|:::.:.|.         |..:.|:...| ||            .:.:::|| ||
Mouse  1110 GYAISLIFLTYVISFISRK---------GKKNSGIWSLS-FY------------IITVFSVA-VI 1151

  Fly  1235 CKLFMI--YEFKLICMDPVVNFTSVEVFKCNSIPNCCIKSNYGTFTAGIYHDLVILTLLDIILLA 1297
            ...|.:  .::.:|.:.|.           :::..|.|.|.: .|...|:.:..::....:.|:.
Mouse  1152 LLAFDVDGTQYYIIFLIPP-----------STLVGCLILSLH-LFIGQIFEEGQVIEPFLVFLIP 1204

  Fly  1298 CLFVSEYHSILGFAD-------------CRLDTRTN------ESPDSNQESRAFPGILSNDTAAL 1343
            .|.|..:...|...:             .|:..|.|      |.|:...|......:.:.:  ||
Mouse  1205 FLHVFIFIFTLRCLEWKFGKKTMRKDPIFRISPRNNDVYQNPEEPEDEDEDVQMERMRTAN--AL 1267

  Fly  1344 VDKEHTSRLNEEE-------RSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKT 1401
            |    ::..:|:.       |.:||......:||.:.....|::.|.:.|.|.|.:.|.|.:||:
Mouse  1268 V----STSFDEKPVIIASCLRKEYAGKQKHCLSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKS 1328

  Fly  1402 TLLKVVVNETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRH 1466
            |.||::..:||:.|||:.:.    .:........:|||||:::|....|.:|.|.|.|.::|.|.
Mouse  1329 TSLKMISGDTKVTAGQVLLK----GSREGDTPGFLGYCPQENALWPNLTVKEHLEIFAAVRGLRK 1389

  Fly  1467 RIGRELSEALLRL---VGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGK 1528
               ...:.|:.||   :.|.......|:..:.|..|:|.|..::||:|.::.:|....||||.|:
Mouse  1390 ---SHAAVAITRLADALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQ 1451

  Fly  1529 -------RIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSG 1586
                   |.|:..|.....:.:.::      .:||.|..|..:|:.|:|..|..:......:...
Mouse  1452 QQIWQAIRAIIKNTDRGALLTTHYM------AEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKD 1510

  Fly  1587 YQLEVRFK--RKVNP-NVSMSRATWNLINHFPM-SPNKKFSAFMEIKFPDAVLTIERDDSMVFVL 1647
            |.||::.|  .:|.| |..:.|.       ||. |..:::|:.|..|.|     :|.      |.
Mouse  1511 YLLEMKVKTLEQVEPLNTEILRL-------FPQASRQERYSSLMAYKLP-----VEA------VQ 1557

  Fly  1648 PLGTTTFSEIFLTLRKDAFEMNIEDYFITRNMLVGFQIF 1686
            ||     |:.|..|.|.....::|:|.::::.|.  |:|
Mouse  1558 PL-----SQAFFKLEKVKQTFDLEEYSLSQSTLE--QVF 1589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 48/246 (20%)
CcmA 541..848 CDD:224054 83/319 (26%)
ABC_subfamily_A 541..761 CDD:213230 63/226 (28%)
ABC2_membrane_3 911..>1189 CDD:289468 57/330 (17%)
ABC2_membrane <1080..>1188 CDD:304374 21/116 (18%)
ABC_subfamily_A 1370..1577 CDD:213230 60/216 (28%)
PRK14255 1371..1586 CDD:172743 59/224 (26%)
Abca8bNP_038879.2 rim_protein <265..1596 CDD:130324 328/1536 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838405
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.750

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