DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and abca2

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_031746716.1 Gene:abca2 / 100498548 XenbaseID:XB-GENE-969968 Length:2496 Species:Xenopus tropicalis


Alignment Length:1968 Identity:404/1968 - (20%)
Similarity:723/1968 - (36%) Gaps:580/1968 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 FDGSPFVEDQVFEEDTLESYS-----------------------NIQPMLNYTILLPSELRMLDG 189
            |.|.|       .||::.:|:                       ::.|.:.|.|...|.......
 Frog   629 FKGFP-------NEDSIVNYTLNQAYHDNVTVFASVIFQTQKDGSLPPHVMYKIRQNSSFTEKTN 686

  Fly   190 DFRMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFL-VLTSHKSL-PTIQ 252
            :.|.|.|    ...|||           ||.. |...||:.:|..:..:.: .:..|..: |...
 Frog   687 EIRRAYW----RPGPNT-----------GGRF-YFLYGFVWIQDMMDRAIISTIVGHDVVEPGNY 735

  Fly   253 IRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLIHFV 317
            ::.||.....:|..:..:.:.||..::|.:::...:.:..:|:||:.::::.:..|.:.|.:|:|
 Frog   736 VQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSVAMMIQHIVAEKEHRLKEVMKMMGLNNAVHWV 800

  Fly   318 SWYLKGLIYEMISSLIIAALLKIRWDQDHG-VLTQTPWYILILVLFCYNCAAVAFAIMVAAFFRN 381
            :|::.|.:...||...:..:||      :| ||..:..:|:.|.|..|..|.:.|..:|:..:..
 Frog   801 AWFITGFVQLSISVTALTGILK------YGQVLMHSNVFIIWLFLSIYAVATIMFCFLVSVLYSK 859

  Fly   382 ALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSY----ALPNVVATLVIEFLIERESIVHI 442
            |..|.....|::.:||||...::...|        |::    |....:|:|:........|....
 Frog   860 AKLASACGGIIYFLSYVPYMYVAIREE--------VAHDKITAFEKCIASLMSTTAFGLGSKYFA 916

  Fly   443 TWEDSGYRLNY--------DGGHITVTASSWIFMLNALVYCAIGLYVD----------------- 482
            .:|.:|..:.:        :|....:..|..:.:::.:||..:..|::                 
 Frog   917 LYEVAGVGIQWRTFSQSPVEGDDFNLMLSMMMLIIDTMVYGILTWYIEAVHPGMYGLPRPWYFPF 981

  Fly   483 ---MWRGGDRSGK--------KMKKPNTNASVQEDPYHERGDSFTHQGQAIGVNS-----TKIYE 531
               .|.|   ||:        ...:|...:.::||             ||..:.|     |:..|
 Frog   982 QRSYWLG---SGRIETWEWSWPWSRPPRLSIMEED-------------QACAMESRRLDETRGIE 1030

  Fly   532 VEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPSR 596
            .||||....:.|.||.|.:.|..:.|||..|.|::||:|...:||||.||:|.:.||.||..|:.
 Frog  1031 EEPSHLPLVVCIDKLTKIYKTGKKLALNKLSLNLHENQVVSFLGHNGAGKTTTMSILTGLFPPTS 1095

  Fly   597 GTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKGLHNNIEIDGQSNYFLNV 661
            |:..|..|:|:||.......:|:...|::|....||.::|.|..|:||:... ||..:.:..:..
 Frog  1096 GSATIYGHDIRTEMNEIRKSMGMCPQHNVLFDKLTVEEHLWFYSRLKGMAEE-EIRKEMDKMIED 1159

  Fly   662 LQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRTI 726
            |::...:...::||:......:|:..||||.|..:::|:..:.:|...:..:|:||.:.|..|||
 Frog  1160 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSKAVILDEPTAGVDPYARRAIWDLILKYKQGRTI 1224

  Fly   727 ILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVKGKN-------------- 777
            :|.::....|:.:.||:||:|:|:|||.|:..|||:.||.||:||.||.::              
 Frog  1225 LLSTHHMDEADLLGDRIAIISHGKLKCYGSPLFLKSTYGDGYKLTVVKNQSGPDTGHTGPSCISP 1289

  Fly   778 YKRDELFGMMNSYMPNMSIERDIGYKVTFVL--ENKFEDQFPMLIDDLEENMQQLGVVSFRIRDT 840
            .....:...:..|:.:..:..|...:::::|  |:..:..|..|...||:|:..|.:.||.:.||
 Frog  1290 CSEPRVSQFIKKYVASCLLVSDTNTELSYILPSESVRKGCFERLFQHLEQNLSDLELTSFGLMDT 1354

  Fly   841 SMEEIFLRFGCEDNDQSGAFQSHENAQVLLEEYY---------------STLAEANEK------- 883
            ::||:||:...||       ||.||:...::|..               |.|.:|.||       
 Frog  1355 TLEEVFLKVSEED-------QSLENSDADIKESKKDTLRPLIQPDGGTGSPLTDALEKPEVELNN 1412

  Fly   884 ------------GRRTG------------------------------------------------ 888
                        ..|:|                                                
 Frog  1413 FASEAKTSQSPSSLRSGSSSSVGSVRGDEGGAYAEFYGDYSPLFDNLQDAENLSLHEPETEEQVL 1477

  Fly   889 -----------W-KLFFLHGRAVIYKRWIAAHRHWIVLIFEVLAMAL---VAVCTFSSIFIYGKN 938
                       | ||...||  :|.||:..|.|:...|..::|..|.   ||:....|:...|  
 Frog  1478 DGQGSYKLEGSWLKLRQFHG--LIVKRFHCAKRNTKALFSQILLPAFFVCVAMTVALSVPEIG-- 1538

  Fly   939 YELEPLTFNLSQLHTVDA----FVELFSEEED---VK---------------------------- 968
             :|.||..:.||.|....    ||...:||:.   :|                            
 Frog  1539 -DLPPLILSPSQYHNYTQPKGNFVPYANEEQPEYRIKLSPDAGPQQLVNTFHLPSGIGATCVLKT 1602

  Fly   969 -------------DMHAYYTELL--YWYDA----------------------------------- 983
                         :|::..:::|  .::||                                   
 Frog  1603 AFNSTLDQLVQSLNMNSSESKMLAAQYFDAMCVDSFTQGLPLSNFVPPPPSPAPSDYPPDEDLSR 1667

  Fly   984 ------------------HVATLTKNRH------------------------------------- 993
                              ...:|.:..|                                     
 Frog  1668 LWNATTFPPEPVQAEAVTSTPSLPRRIHEPIRCTCSMQGTGFSCPSGVGGHPHQMKVVTGDIMVA 1732

  Fly   994 ------NAYALLTQNQFTAHVNSRYIFG-------ATFDQK------------IVTAWFNNIPLH 1033
                  :.|.|.|.::|..|......||       |:|..|            ...|::||...|
 Frog  1733 ISGRNVSEYLLYTSDRFRLHRYGALTFGNVQKAIPASFGAKAPPMLRKIAVRHTAQAYYNNKGYH 1797

  Fly  1034 SAPYALNVVHNAVARHLFDE----EATIDVTLAPLPF-RTAINTFPPSSHTFGG---CLAFGICF 1090
            |.|..||.::||:.|....:    .|...:|:...|. :|:.:.  ...:...|   .:|..|..
 Frog  1798 SMPTYLNALNNALLRANLPKGKGNPAAYGITVTNHPMNKTSASL--SLDYLLQGTDVVIAIFIIV 1860

  Fly  1091 VLTFIWPAFAIYMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVALYENPN 1155
            .::|:..:|.::::.|:.:..|..||::|.....||....::|:|..|:...|.::::.:::.|.
 Frog  1861 AMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPA 1925

  Fly  1156 HD-----------VMLYGYISVTLML--GGFWVILLAYLMASLCRNPCYGFLWLCGIN-SIGLVC 1206
            :.           .:|||: |:|.::  ..||..:           |...:::|..|| .||:..
 Frog  1926 YTSPTNFPAVLSLFLLYGW-SITPIMYPASFWFEV-----------PSTAYVFLIVINLFIGITA 1978

  Fly  1207 FSQFYRTHPESMLLEPTFMAMYTVATVICKLF-MIYEFKLICMDPVVNFTSVEVFKCNSIPNCC- 1269
                                  ||||.:.:|| ...:.||:                ||....| 
 Frog  1979 ----------------------TVATFLLQLFEHDKDLKLV----------------NSYLKSCF 2005

  Fly  1270 -IKSNY----------------------GTF------------TAGIYHDLVILTLLDIILLACL 1299
             |..||                      |.|            |.|    ||.:|:...:.....
 Frog  2006 LIFPNYNLGHGLMEMAYNEYINEYYAKIGQFDKMKSPFEWDIVTRG----LVAMTIEGFVGFFIT 2066

  Fly  1300 FVSEYHSILGFADCRLDTRTNESPD---SNQESRAFPGILSNDTAAL--VDKEHTSRLNEEERSK 1359
            .:.:||.........:..:..|..|   :|:..|...|...||...:  :.|.:.||        
 Frog  2067 IMCQYHFFRKPQRLPISNKPIEDDDVDVANERQRVLRGGADNDMLKIENLTKVYKSR-------- 2123

  Fly  1360 YAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVNETKMNAGQLWIHDYS 1424
                      |..|...:..|...:...||..:.|.|.:||||..|::..:.....|:.:|:.:|
 Frog  2124 ----------KMGRILAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDESTTGGEAFINGHS 2178

  Fly  1425 VNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRELSEALLRLVGLTPCWNRS 1489
            :....:|..:.:|||||.|:|..|.|.:|.|.::..|:|...:....:.:..|..:.|....::.
 Frog  2179 ILKELLQVQQTIGYCPQFDALFDELTAQEHLELYTRLRGIPWKDEERVVKWALEKLELAKYADKP 2243

  Fly  1490 VRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQAMGSSFLYTMLTGLD 1554
            ....:.|..|:|..|.|::|.|..|.:|....|:||..:|.:..:...:...|.|.:.|..:..:
 Frog  2244 AGTYSGGNKRKLSTAIALIGYPSFIFLDEPTTGMDPKARRFLWNLILDIIKTGRSLVLTSHSMEE 2308

  Fly  1555 AERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKRKVNPNVSMSRATWNLINHFPMSPN 1619
            .|.|..|..:::.|:|..:..:......:..||.:.||.|..:|.                    
 Frog  2309 CEALCTRLAIMVNGRLKCLGSIQHLKNRFGDGYMITVRTKSSINV-------------------- 2353

  Fly  1620 KKFSAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNIEDYFITR----NML 1680
            |:...|....||:|||.......:.:.|.....:.:::|..:.:....:.||||.:::    |:.
 Frog  2354 KEVVRFFNRNFPEAVLKERHHTKVQYQLKSEQVSLAQVFSKMEQVLDVLGIEDYSVSQTTLDNVF 2418

  Fly  1681 VGF---QIFTYDQHQDNP 1695
            |.|   |....:|.:..|
 Frog  2419 VNFAKKQSDNMEQQESAP 2436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 46/229 (20%)
CcmA 541..848 CDD:224054 101/322 (31%)
ABC_subfamily_A 541..761 CDD:213230 74/219 (34%)
ABC2_membrane_3 911..>1189 CDD:289468 73/466 (16%)
ABC2_membrane <1080..>1188 CDD:304374 24/123 (20%)
ABC_subfamily_A 1370..1577 CDD:213230 52/206 (25%)
PRK14255 1371..1586 CDD:172743 51/214 (24%)
abca2XP_031746716.1 rim_protein 1..2430 CDD:130324 402/1960 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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