DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and abca1

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_004910916.1 Gene:abca1 / 100491942 XenbaseID:XB-GENE-1001143 Length:2311 Species:Xenopus tropicalis


Alignment Length:2055 Identity:411/2055 - (20%)
Similarity:776/2055 - (37%) Gaps:570/2055 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 WKNHKLQLANPLELLVIL-LVPPLFTLVAVLMRFFIPVNHRSDTVYDPIDLDRSWMQMVEKLEK- 77
            |:..:.|:.|.:|....: |:..|.|            |..|.|..|.......|  ..|.:.: 
 Frog   420 WEEVRPQIKNFMESSQEMDLIRTLLT------------NKGSKTFLDQQLNSTGW--TTENISRF 470

  Fly    78 -ARQVADTYNVKGNPF---------TPHLVIGWAPKRYGIFQAMMRRVQ-KQIEPMTSVGFEDCE 131
             |::.||.....| ||         |..:|:        .....|..|. .::||:.:      |
 Frog   471 LAKETADVETENG-PFYSWREALNETDRVVL--------TLSRFMECVNLDKLEPVAT------E 520

  Fly   132 EM-----RESVIENGLFAGLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSELRMLDGDF 191
            ||     .|.:.|...:||:.|...|       ||:|     .:...:.|.|.:..:........
 Frog   521 EMLIDKSMELLNERKFWAGIVFMDMP-------EEET-----ELPHHVKYKIRMDIDNVERTNKI 573

  Fly   192 RMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFL-VLTSHKSLPTIQIRR 255
            :...|      ||....     .|:|.  :.|:..||..||..|.::.: |.|..:....|.:::
 Frog   574 KDGYW------DPGPRA-----DPFED--MRYIWGGFSYLQDVVEQAIIRVQTGVEKRTGIYVQQ 625

  Fly   256 FPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNIGNLIHFVSWY 320
            .|......|..:..::..||..:.:.:::...:.:..:|.||::::::.:..|.:.|.|.::||:
 Frog   626 MPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWLSWF 690

  Fly   321 LKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCAAVAFAIMVAAFFRNALNA 385
            :..||..::|:.::..:||     ...:|..:...::.:.|..:....::...:::..|..|..|
 Frog   691 ISSLIPLLMSAALLVLILK-----TGNLLPYSDPSVVFVFLSVFAVVTISQCFLISTIFSRANLA 750

  Fly   386 VRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLVIE---------FLIERESIVH 441
            .....|::...|:| ::|.      :....||.|.| .:.|:.:..         |.:..|..|.
 Frog   751 AACGGIIYFTLYLP-YVLC------VAWQDYVGYTL-KIFASFLSPVAFGFGCEVFALLEEQGVG 807

  Fly   442 ITW--------EDSGYRLNYDGGHITVTASSWIFMLNALVYCAIGLYVDMWRGGDRS-------- 490
            :.|        |::||         .:|.|.::.:.:.|:|..:..|::....|...        
 Frog   808 VQWDNLLESPLEENGY---------NITTSGFMMLFDTLLYGIMTWYIEAVFPGQYGIPRPWYFP 863

  Fly   491 -------GKKMKKPNTNASVQEDPYHERGDSFTHQGQAIGVNSTKIYEVEPSHRRFKLKIKKLCK 548
                   |::.|:.|...:||:.                  :|....|.||||....:.|:.|.|
 Frog   864 FTKSYWCGEECKEYNQPHTVQKG------------------SSEVCMEEEPSHLPLGVSIQNLVK 910

  Fly   549 RFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPSRGTVMISSHNIQTERKAA 613
            .:....:.|::..:.|.||.::|..:||||.||:|.:.||.||..|:.||..|...:|:||..:.
 Frog   911 IYRNGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTTGTAYIMKKDIRTELNSI 975

  Fly   614 SMELGIAFGHDMLLTGFTVIDYLRFICRVKGLH------------NNIEIDGQSNYFLNVLQIGG 666
            ...||:...|::|....||.:::.|..|:|||.            |::.:..:..|..:.|. ||
 Frog   976 RQNLGVCPQHNVLFDALTVEEHIWFYARLKGLSEEKVKAEMEQMVNDVGLPHKKKYKTSQLS-GG 1039

  Fly   667 LKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRTIILVSN 731
            ::.|            :|:..||||.|.::::|:..:.:|..::..:|.|:.:.:..|||||.::
 Frog  1040 MQRK------------LSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLIKYRQGRTIILSTH 1092

  Fly   732 SPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVK---------------------- 774
            ....|:.:.||:||:|:|:|.|.|:..||||..|.||.||.||                      
 Frog  1093 HMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKRDNDSSLSSCRNSSSTMSYLKK 1157

  Fly   775 -----------------------------------------------------------GKNYKR 780
                                                                       |.:::.
 Frog  1158 ESSKQTACKQHPSPMIAAPSASGTTAAVITKHSKHTAGQKKEAKDREDSVSQSSSDAGLGSDHES 1222

  Fly   781 D----------ELFGMMNSYMPNMSIERDIGYKVTFVL--ENKFEDQFPMLIDDLEENMQQLGVV 833
            |          .:..::|.::|...:..|||:::|:||  |...|..|..|..::::.:..||:.
 Frog  1223 DTMTIGLTDVSAISNLINKHVPEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGIS 1287

  Fly   834 SFRIRDTSMEEIFLRF----GCEDNDQSG---------AFQSHENAQVLLEE---YYSTLAEANE 882
            |:.|.||::|||||:.    |.:.....|         ||..|::......|   :.:..::.:.
 Frog  1288 SYGIADTTLEEIFLKVADDTGVDAETSDGTLPARRKRYAFGDHQSCLRPFTEDDAFDTNDSDMDP 1352

  Fly   883 KGRRT---------------GWKLFFLHGRAVIYKRWIAAHRH------WIVLIFEVLAMALVAV 926
            :.|.|               .|.|......|:::||.:.|.|.      .|||....:.:|||  
 Frog  1353 ESRETDYLSGIDGKGSYQLKSWNLMRQQFTALLWKRLLYAKRSRKGFFAQIVLPAVFVLIALV-- 1415

  Fly   927 CTFSSIF-IYGK--NYELEPLTFN-------------------LSQL-------------HTV-- 954
              ||.|. .:||  :.||||..::                   |..|             |:|  
 Frog  1416 --FSLIVPPFGKYPSLELEPWMYDEQYTFFSNDAPDDQGTQALLKALIDKPGFGTACMEGHSVMK 1478

  Fly   955 --------------------DAFVE----------------------------------LFSEEE 965
                                |.|:.                                  .|...:
 Frog  1479 VSCSGEEEEWSTQFVSQSVMDLFLNGNWTMENPSPSCECSSDKRKKMLPICPPGAGGLPPFQRRQ 1543

  Fly   966 DVKDMHAYYT------ELLYWYDAHVATLTKNR---------------HNAYALLTQNQFTAHVN 1009
            :..|:....|      .|:..|...:....||:               .|:.||....:..|.:|
 Frog  1544 NTSDILQNLTGRNISDYLVKTYSQIIEKSLKNKIWVNEFRYGGFSLGASNSPALPPNEEVVASIN 1608

  Fly  1010 --------------SRYI--FGA------TFDQKIVTAWFNNIPLHSAPYALNVVHNAVARHLF- 1051
                          :|::  |||      |.|.  |..||||...|:....|||::||:.|... 
 Frog  1609 HIKKRLELPQNGAANRFLDSFGAFMKGLDTKDN--VKVWFNNKGWHAVGAFLNVMNNAILRSKLR 1671

  Fly  1052 --DEEATIDVTLAPLPFR-------------TAINTFPPSSHTFGGCLAFGICFVLTFIWPAFAI 1101
              ::.|:..:|....|..             |:::..          ::..:.|.::|:..:|.:
 Frog  1672 EGEDPASYGITAFNHPLNLTKEQLSEVALMTTSVDVL----------VSICVIFAMSFVPASFVV 1726

  Fly  1102 YMITERGSLLKKQQFLAGVRVCSYWTFTVLYDLLFLLIFCACVVVMVALYENPNHDVMLYGYIS- 1165
            ::|.||.|..|..|.::||:...||....::|:...::....|:::...::..:       |:| 
 Frog  1727 FLIQERVSKAKHMQCISGVKPVIYWLANFVWDMCNYVVPATLVIIIFICFQQDS-------YVSS 1784

  Fly  1166 -------VTLMLGGFWVILLAYLMASLCRNPCYGFLWLCGIN-SIGLVCFSQFYRTHPESMLLEP 1222
                   :.|:|.|:.:..|.|..:.:.:.|...::.|..:| .||:                  
 Frog  1785 SNLPVLALLLLLYGWSITPLMYPASFIFKIPSTAYVVLTSVNLFIGI------------------ 1831

  Fly  1223 TFMAMYTVATVICKLF--------------MIYEFKLICMDPVVNFTSVEVFKCNSIPNCCIKSN 1273
                ..:|||.:.:||              ::..|...|:...:    :::.|..::.:...:..
 Frog  1832 ----NGSVATFVLELFTNNKLSNINEILKSVLLIFPHFCLGRGL----IDMVKNQAMADALERFG 1888

  Fly  1274 YGTFTAGIYHDLV-----ILTLLDIILLACLFVSEYHSILGFADCRLDTRTNESPDSNQESRAFP 1333
            ...|.:.:..|||     .:.:..::..|...:.:|...:               .....:...|
 Frog  1889 ENRFVSPMSWDLVGRNLFAMAVEGVVFFAITLMIQYRFFI---------------KPRPVNAKLP 1938

  Fly  1334 GILSNDTAALVDKEHTSRLNEEERSKYAAV-GIGIVSKYRRNRVLRDLDFTLAKSECLSITGANN 1397
            .::..|.....:::   |:||..|:....: |:..:.:.:|...:..|...:...||..:.|.|.
 Frog  1939 PVVDEDEDVARERQ---RINEGGRNDILELKGLTKIYRMKRKPAVDRLCVGIPPGECFGLLGVNG 2000

  Fly  1398 SGKTTLLKVVVNETKMNAGQLWIHDYSV--NTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAM 1460
            :||||..|::..:|.:.||:.::.::|:  |.|.|  ::.:|||||.|::....|.||.|.::|:
 Frog  2001 AGKTTTFKMLTGDTDVTAGEAFLKNHSILRNIHEV--HQNMGYCPQFDAINELLTGREHLELYAL 2063

  Fly  1461 LQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDP 1525
            |:|...:...:::|..:|.:||.....:.....:.|..|:|..|.|::|.|.::.:|....|:||
 Frog  2064 LRGVPEKEVCKVAEWAIRKLGLVKYSEKHAGNYSGGNKRKLSTAIALIGGPPVVFLDEPTTGMDP 2128

  Fly  1526 TGKRIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLE 1590
            ..:|.:.....::...|.|.:.|..:..:.|.|..|..:::.|:...:..:......:..||.:.
 Frog  2129 KARRFLWNCALSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFKCLGSVQHLKNRFGDGYTII 2193

  Fly  1591 VRFKRKVNPNVSMSRATWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFS 1655
            ||.... ||::                  |....|....||.:||..:....:.:.|....::.:
 Frog  2194 VRIAGS-NPDL------------------KPVEEFFSHAFPGSVLKEKHRSMLQYQLRSSQSSLA 2239

  Fly  1656 EIFLTLRKDAFEMNIEDYFITRNML-VGFQIFTYDQHQDN 1694
            .||..|.|:...::||||.:::..| ..|..|..||..|:
 Frog  2240 RIFSILSKNKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDD 2279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 41/233 (18%)
CcmA 541..848 CDD:224054 103/411 (25%)
ABC_subfamily_A 541..761 CDD:213230 69/231 (30%)
ABC2_membrane_3 911..>1189 CDD:289468 77/435 (18%)
ABC2_membrane <1080..>1188 CDD:304374 22/115 (19%)
ABC_subfamily_A 1370..1577 CDD:213230 54/208 (26%)
PRK14255 1371..1586 CDD:172743 54/216 (25%)
abca1XP_004910916.1 rim_protein 1..2272 CDD:130324 407/2046 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.