DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and abca3

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_004918068.1 Gene:abca3 / 100490925 XenbaseID:XB-GENE-1010698 Length:1720 Species:Xenopus tropicalis


Alignment Length:1861 Identity:447/1861 - (24%)
Similarity:779/1861 - (41%) Gaps:339/1861 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RKFLLMNWKNHKLQLANPLELLVILLVPPLFTLVAVLMRFFIP-VNHRSDTVYDPIDL------- 64
            |:..|:.|||:.||....|..::.|.:|.||:.:.:.:|..:| |.:.:.|:|..:..       
 Frog    21 RQLGLLLWKNYILQKRQVLVTVIELALPLLFSAILIALRHRVPSVTYPNATLYREMPFPNLPFIP 85

  Fly    65 -DRSW-MQMVEKLEKARQ--VADTYNVKGNPFTPHLVIGWAPKRYGIFQAMMRRVQKQIEPMTSV 125
             .|.| :..|....||..  :.|.    ||...|:.....:.:.:                .|..
 Frog    86 GPRPWELAYVPSHSKAAHSIILDV----GNHLFPYYFANQSARGF----------------PTEE 130

  Fly   126 GFEDCEEMRESVIENGLFAGLCFD------GSPFVEDQVFEEDTLESYSNIQPMLNYTILLPSEL 184
            .|||  .:|.:...:.:.|.:.|:      |.| :..||......:......||...|.|.|:..
 Frog   131 DFED--YIRHNNHSSKILAAVVFEHNFNHSGDP-LPLQVRYRLRFKYSPRNAPMSEQTGLNPNVD 192

  Fly   185 RMLDGDFRMANWMTLYNDDPNTFVLTRLNQPYE-----GGFVGYVREGFIRLQKSVSESFLVLTS 244
            |         ||.|.|     .:.|.::..|.|     ||..||.||||:.:|..|..:.:...:
 Frog   193 R---------NWHTRY-----LYPLFQMPGPREAGDKTGGTPGYQREGFLAMQHEVDRAIMRYHA 243

  Fly   245 HKS----LPTIQ--IRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQ 303
            ::|    |..|.  |||||......|..:..:...:|.::::.|.:.:...|..:|.||:.::::
 Frog   244 NESGRLLLDNIDVAIRRFPYPPYVNDLFILAIQNQLPLLLMLSFTYTSLSIVRALVLEKERKLKE 308

  Fly   304 FLINMNIGNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCAA 368
            ::..|.:.:.:|..:|::...:..::|...:..||.|:...:..|||::...::.:.:..::.:.
 Frog   309 YMRVMGLSSWLHSTAWFIHFFLLLLVSVFFVTLLLCIQVSSEGAVLTRSDPSLVFVYILVFSVST 373

  Fly   369 VAFAIMVAAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLVIEF- 432
            ::|:.|:::||..|..|......|:.:||:|.|.:|...:...|..:..|....||...:..:. 
 Frog   374 ISFSFMISSFFSRANMAAAAGGFLYFLSYIPYFFISPWYDELNHGAKVSSCLFSNVGMAMGAQLI 438

  Fly   433 -LIERESIVHITWEDSGYRLNYDGGHITVTASSWIFMLNALVYCAIGLYVD-------------- 482
             :.|.:. ....|.:....::.| .:.|:.....:.||:.::|..:|.||:              
 Frog   439 GMFEGKG-TGAQWSNLFTPVSVD-DNFTLGQVLQMLMLDCVLYFLVGWYVESVMPGDYGVPQPWY 501

  Fly   483 ------MWRGGDRSGKKMKKPNTNASVQEDPYHERGDSFTHQGQAIGVNSTKIYEVEPSHRRFKL 541
                  .|.|..|..:.::|.:     .|||  |:    ..:|:.:        |.|||.....:
 Frog   502 FCFLPSYWCGTPRLVEGLEKED-----DEDP--EK----ALKGEYL--------EEEPSDLVPGI 547

  Fly   542 KIKKLCKRF--ATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPSRGTVMISSH 604
            :||.|.|.:  :...|.|:...:.|:||.:||||:||||.||||.|.:|.||..||.|...|..:
 Frog   548 RIKHLTKVYHASGKKRIAVRDLTLNMYEGQVTVLLGHNGAGKSTTLSMLTGLSPPSSGECYIGGY 612

  Fly   605 NIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKG-----LHNNIEIDGQSNYFLNVLQI 664
            .|..:.......||:...||:|..|.||.::|.|...:||     ....:|         .:|||
 Frog   613 EITRDTALIRRSLGLCPQHDVLFQGLTVEEHLYFYAGLKGCPRWCCPEEVE---------KILQI 668

  Fly   665 GGLKTKR--IRTLTDRDLC-LVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRTI 726
            ..|:.||  :.|......| .:||..|.:|.|.::::|:..|.:|..::...|.|:.:.|..||:
 Frog   669 LRLEEKRNALSTQLSGGTCRKLSIGIALIGGSKVVMLDEPTSGMDPASRRDTWELLRQHKHDRTL 733

  Fly   727 ILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVKGKNYKRDELFGMMNSYM 791
            :|.::....|:.:.||:||::.|:|:|.|:..|||..||.||.:..||..:.:.:::..::.||:
 Frog   734 LLTTHFMDEADILGDRIAILAQGQLQCCGSPLFLKCKYGAGYHMVMVKEPHCQVEDITHLITSYV 798

  Fly   792 PNMSIERDIGYKVTFVLENKFEDQFPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLRFG------ 850
            ||.::|.:.|.:::::|..:...:|..|..:||...::||:.|:....|:|||:|||.|      
 Frog   799 PNATLESNAGAELSYILPKESTHRFEPLFSELELRREELGIASYGASVTTMEEVFLRVGKLVDTS 863

  Fly   851 ---------------------------CEDNDQSGAFQSHENAQVLLEEYYSTLAEANEKGRRTG 888
                                       |..:|.:      |::..|:.|..|.:   ...|:.|.
 Frog   864 LDIQAIQLPPLQYQHERRANDWGTEESCSMSDCT------EDSGTLITEDCSNI---KLNGKCTL 919

  Fly   889 W-KLFFLHGRAVIYKRWIAAHRHWIVLIFEVL------AMALVAVCTFS----------SIFIYG 936
            | :.|:    |:..||...:.|:|.:::.:.|      .:|||...||.          |:..||
 Frog   920 WCQQFY----ALFVKRAAYSWRNWKMVVGQFLVPLVFTTLALVVGKTFPGPQDSPPLDLSLVPYG 980

  Fly   937 KN---YELEPLTFNLSQLHTVDAFVELFS----EEEDVKDMHAYYTELLYWYDAHVATLTKNRHN 994
            ..   |.|.|....|.| ...|.|.:.||    |.::|.|            |.....||:....
 Frog   981 YTVVPYSLPPNASTLLQ-SLADNFRDQFSGQQMEPQEVLD------------DLDNYLLTRASDE 1032

  Fly   995 AYALLTQNQFTA----HVNSRYIFGATFDQKIVTAWFNNIPLHSAPYALNVVHNAVARHLFDEEA 1055
            . ||..:....|    ::.||.         .|||.|||...|:...||.:|.||:.:.:...||
 Frog  1033 G-ALFAERCLCAADIQNLGSRI---------KVTARFNNQAYHAVASALALVDNALFKLIAGPEA 1087

  Fly  1056 TIDVTLAPLPFRTAINTFPPSSHTFGGCLAFGICFVLTF----IWPAFAIYMITERGSLLKKQQF 1116
            :|.||..|.|..|   |.........|...|.|...|.:    :...|::.::.||....|..||
 Frog  1088 SISVTNYPQPRNT---TETAQDQLLEGQAGFAIAINLLYGMASLASTFSLLLVGERAVKSKHVQF 1149

  Fly  1117 LAGVRVCSYWTFTVLYDLLFLLIFCACVVVM-----VALYENPNH--DVMLYGYISVTLMLGGFW 1174
            ::|....|||...:.:|||..||.|..::.:     |..|...:|  ||:|      .|:|.|:.
 Frog  1150 VSGASALSYWLSALTWDLLNFLIPCTFMLAVFQAFDVRAYTEEHHLVDVIL------MLLLYGWA 1208

  Fly  1175 VILLAYLMASLCRNPCYGF-----------------LWLCGINSIGLVCFSQFYRTHPESMLLEP 1222
            ||.|.||.:.|..:....:                 :.:..|.::|||..|.         :|:.
 Frog  1209 VIPLMYLFSFLFTSTATAYTRLTIFNILSGTASFLSVTIMSIPALGLVDLSH---------ILDQ 1264

  Fly  1223 TFMAM--YTVATVICKLFMIYEFKLICMDPVVNFTSVEVFKCNSIPNCCIKSNYGTFTA-GIYHD 1284
            .|:.:  |.:.......:..|.....|.....:....:.|      |...:.||.:::: |:...
 Frog  1265 VFLVLPNYCLGRSFSDFYQNYHLLKFCRSSPRSAIICQAF------NITCQDNYFSWSSPGVGRY 1323

  Fly  1285 LVILTLLDIILLACLFVSEYHSILGFADCRLDTRTN-----------ESPDSNQESRAFPGILSN 1338
            |..:.:.....|..||:.|....     |||.....           |||.|..|.|        
 Frog  1324 LTAMAVQGSAFLCLLFIIESQIF-----CRLYNLCRSYKEHRWASLPESPVSPPEDR-------- 1375

  Fly  1339 DTAALVDKEHTSRLNEEERSKYAAVGIGIVSK-----YRRNRVLRDLD---FTLAKSECLSITGA 1395
            |.|     :...::.|....:.:|:...:|.:     |.|..::..:|   ..:.:.||..:.|.
 Frog  1376 DVA-----DERKKVLESPLEQLSALSSPLVIRELSKVYGRRALVLAVDRISLAVGRGECFGLLGF 1435

  Fly  1396 NNSGKTTLLKVVVNETKMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAM 1460
            |.:||||..:::..:..:::|..:|..||:..|..:..:.:|||||.|.|....|.||.|.::|.
 Frog  1436 NGAGKTTTFRMLTGDETVSSGDAYIDGYSILRHIKKVQQRIGYCPQFDPLLDHMTGRETLCMYAR 1500

  Fly  1461 LQGHRHRIGRELSEALLRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDP 1525
            |:|..........|.:||.:.|....|:.||..:.|..|:|....|::|.|.:|.:|....|:||
 Frog  1501 LRGVPEGYINSCVENMLRGLLLEAHANKLVRTYSGGNKRKLSAGIALIGGPSVIFMDEPSTGMDP 1565

  Fly  1526 TGKRIILMMTSTMQAMGSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLE 1590
            ..:|::....:..:..|.:.:.|..:..:.|.|..|..:::.|||..:.........:.|||.|.
 Frog  1566 VARRLLWDAVTRTRENGKAVIITSHSMEECEALCTRLAIMVNGQLKCLGSPQHLKNKFGSGYTLL 1630

  Fly  1591 VRFKRKVNPNVSMSRATWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFS 1655
            .:          .||....|:         .|..|:|..||.:||..|....:.:.:.....:::
 Frog  1631 AK----------TSRGAEELM---------AFKDFVETIFPGSVLKHEHQGMVHYHITSQELSWA 1676

  Fly  1656 EIFLTLRKDAFEMNIEDYFITRNMLVGFQIF-TYDQHQDNP 1695
            ::|.||.|...:.::|||.:::..|.  |:| ::...|.:|
 Frog  1677 QVFGTLEKAKEKFDLEDYCVSQISLE--QVFLSFSHFQQSP 1715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 41/218 (19%)
CcmA 541..848 CDD:224054 102/316 (32%)
ABC_subfamily_A 541..761 CDD:213230 75/229 (33%)
ABC2_membrane_3 911..>1189 CDD:289468 86/315 (27%)
ABC2_membrane <1080..>1188 CDD:304374 35/118 (30%)
ABC_subfamily_A 1370..1577 CDD:213230 57/214 (27%)
PRK14255 1371..1586 CDD:172743 57/217 (26%)
abca3XP_004918068.1 ABC2_membrane_3 <279..485 CDD:289468 40/207 (19%)
CcmA 547..830 CDD:224054 92/291 (32%)
ABC_subfamily_A 547..768 CDD:213230 75/229 (33%)
ABC2_membrane_3 939..1287 CDD:289468 95/388 (24%)
NatA 1399..1625 CDD:226927 58/225 (26%)
ABC_subfamily_A 1399..1620 CDD:213230 58/220 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X215
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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