DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1494 and abca1b

DIOPT Version :9

Sequence 1:NP_001259763.1 Gene:CG1494 / 33102 FlyBaseID:FBgn0031169 Length:1695 Species:Drosophila melanogaster
Sequence 2:XP_005173137.1 Gene:abca1b / 100136868 ZFINID:ZDB-GENE-030131-9826 Length:2282 Species:Danio rerio


Alignment Length:1912 Identity:388/1912 - (20%)
Similarity:718/1912 - (37%) Gaps:507/1912 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 QIEPMTSVGFEDCEEMRESVIENGLF-AGLCFDGSPFVEDQVFEEDTLESYSNIQPMLNYTILLP 181
            ::||:::.  |.......|:::|..| ||:.|...|            .:.|.:.|.:||.|.:.
Zfish   512 KLEPVSTE--EKLVNESMSLLDNRKFWAGIVFLDIP------------SNSSELPPNVNYKIRMD 562

  Fly   182 SELRMLDGDFRMANWMTLYNDDPNTFVLTRLNQPYEGGFVGYVREGFIRLQKSVSESFL-VLTSH 245
            .:........:...|      ||....     .|:|.  :.|:..||..||..|..|.: .:|..
Zfish   563 IDNVERTNKIKDGYW------DPGPRA-----DPFED--LRYIWGGFSYLQDVVEHSIIRAVTGS 614

  Fly   246 KSLPTIQIRRFPITGREQDPLMGNLNYGMPFIIIIGFLFPAQLFVWQVVSEKQSQVRQFLINMNI 310
            |....:.|::.|......|..:..::..||..:.:.:::...:.:..||.||::::::.:..|.:
Zfish   615 KEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIKGVVYEKEARLKETMRIMGL 679

  Fly   311 GNLIHFVSWYLKGLIYEMISSLIIAALLKIRWDQDHGVLTQTPWYILILVLFCYNCAAVAFAIMV 375
            .|.|.:.||::..||..:||:.::..|||:     ..:|..:...::.|.|..:....:....::
Zfish   680 DNGILWFSWFISSLIPLLISAGLLVLLLKM-----GNLLPYSDPGVVFLFLGSFAVVTIMQCFLI 739

  Fly   376 AAFFRNALNAVRVLTILWIMSYVPTFILSNNLEGNIHALRYVSYALPNVVATLVIE--------- 431
            :..|..|..|.....|::...|:| ::|.      :....||.:| ..|:|:|:..         
Zfish   740 STAFARANLAAACGGIIYFTLYLP-YVLC------VAWQDYVGFA-AKVIASLLSPVAFGFGCEY 796

  Fly   432 FLIERESIVHITW--------EDSGYRLNYDGGHITVTASSWIFMLNALVYCAIGLYVD------ 482
            |.:..|..|.|.|        |:..|.|         |....:...:|.:|..:..|::      
Zfish   797 FALFEEQGVGIQWNNLFSSPVEEDDYNL---------TTCLILMYFDAFLYGVMTWYIETVFPGQ 852

  Fly   483 --------------MWRGGDRSGKKM---KKPNTNASVQEDPYHERGDSFTHQGQAIGVNSTKIY 530
                          .|.|.:.:....   ||.|..|...|:                        
Zfish   853 YGIPRPWYFPFTKSYWFGENSTNNTAIHGKKSNAGAVCIEE------------------------ 893

  Fly   531 EVEPSHRRFKLKIKKLCKRFATNDRPALNLFSWNVYENEVTVLMGHNGCGKSTLLKILAGLVEPS 595
              ||:|.:..:.|:.|.|.:....:.|::..:...:|.::|..:||||.||:|.:.||.||..|:
Zfish   894 --EPTHLKLGVYIENLVKVYRHGKKLAVDGLTLGFHEGQITSFLGHNGAGKTTTMSILTGLFPPT 956

  Fly   596 RGTVMISSHNIQTERKAASMELGIAFGHDMLLTGFTVIDYLRFICRVKGLHNNIEIDGQSNYFLN 660
            .||..|...:|::|..:....||:...|::|.:..||.:::.|..|:|||... |:..:....|:
Zfish   957 SGTAYIMGKDIRSELSSIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEE-EVKAEMEQILS 1020

  Fly   661 VLQIGGLKTKRIRTLTDRDLCLVSICCAFVGNSPIILIDDVHSDLDKRTQSLVWNLINEEKSKRT 725
            ...:...:..|...|:......:|:..||||.|.::::|:..:.:|...:..:|:|:.:.::.||
Zfish  1021 DTGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRAGRT 1085

  Fly   726 IILVSNSPALAENIADRMAIMSNGELKCTGTKPFLKNMYGHGYRLTCVKGKN------------- 777
            |:|.::....|:.:.||:||:|:|:|.|.|:..|||...|.||.||.|| ||             
Zfish  1086 ILLSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVK-KNTEPSLSSCRNSSS 1149

  Fly   778 ----YKRDE---------------------------------------LFGMMNSYMPNMSIERD 799
                .|:|:                                       :..::..::|...:..|
Zfish  1150 TVSFVKKDDNASESSSDAGLGSDQESEAATAIGTSWPESPVVPVDVTIISRLILKHVPAARMVED 1214

  Fly   800 IGYKVTFVL--ENKFEDQFPMLIDDLEENMQQLGVVSFRIRDTSMEEIFLR-------------- 848
            .|:::|:||  |:.....|..|..||::.:..||:.|:.:.||::|||||:              
Zfish  1215 QGHEITYVLPYESAKNGAFVELFHDLDDRLADLGISSYGVSDTTLEEIFLKVAEDSGVDTEMLSD 1279

  Fly   849 ------------FGC----------ED-----NDQSGAFQSHENAQVLLEEYYSTLAEANEKG-- 884
                        ||.          ||     |:..|..:|.|.      :|   |:.::.||  
Zfish  1280 GTLPVRRQRRHAFGADHQSCLKPLTEDDSFDCNESEGDPESKET------DY---LSGSDGKGSY 1335

  Fly   885 RRTGWKLFFLHGRAVIYKRWIAAHRH------WIVLIFEVLAMALVAVCTFSSIF-IYGK----- 937
            :..||.|......|:::||.:.|.|.      .|||....:.:|||    ||.|. .:||     
Zfish  1336 QVKGWSLKRQQFVALLWKRLLYARRSRKGFFAQIVLPAVFVCIALV----FSLIVPPFGKYPSLA 1396

  Fly   938 ----NYELEPLTFNLSQLHTV--------------------------DAFVELFSEEEDVKDMHA 972
                .||.:.:.|:....:.|                          ||...:..||....::..
Zfish  1397 LNPWMYEEQFMFFSEDAPYDVSTHKLLRALFDDPGFGTRCMKGESIPDAPCTMGDEEWSTPEVPE 1461

  Fly   973 YYTELL---YW--YDAHVA------------------------------------TLTKNRHNAY 996
            ...|:|   .|  .|...|                                    .||....:.|
Zfish  1462 SIIEILTTRNWTMNDPSPACECSCNGKKKMLPECPAGAGGLPPPQIKISETETLQNLTGRNISDY 1526

  Fly   997 ALLTQNQ-------------------FTAHVNS-----------------RYIF------GATFD 1019
            .:.|..|                   |:....|                 |.||      |:..|
Zfish  1527 LVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSTQVLPPAEEIDDAISRVREIFQLGKDSGSAAD 1591

  Fly  1020 QKI---------------VTAWFNNIPLHSAPYALNVVHNAVARHLFDEEATIDVTLAPLPFRTA 1069
            :.:               |..||||...||....|||::|.:.|      |.:.....|..|...
Zfish  1592 RFLKSLSAFINGLDTKNNVKIWFNNKGWHSIGAFLNVMNNGILR------ANLPPGKDPSEFGIT 1650

  Fly  1070 INTFP----------PSSHTFGGCLAFGIC--FVLTFIWPAFAIYMITERGSLLKKQQFLAGVRV 1122
            ....|          .:..|....:...||  |.::|:..:|.:::|.||.:..|..||::||:.
Zfish  1651 AYNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQP 1715

  Fly  1123 CSYWTFTVLYDLLFLLIFCACVVVMVALYENPNHDVMLYGYISVT--------LMLGGFWVILLA 1179
            ..||....|:|:...::....|:::...::..       .|:|.|        |:|.|:.:..|.
Zfish  1716 YLYWLANFLWDMCNYVVPATLVILIFVCFQQK-------AYVSATNLPVLALLLLLYGWSITPLM 1773

  Fly  1180 YLMASLCRNPCYGFLWLCGIN-SIGLVCFSQFYRTHPESMLLEPTFMAMYTVATVICKLFMIYE- 1242
            |..:.|.:.|...::.|..:| .||:                      ..:::|.:.:||..:| 
Zfish  1774 YPASFLFKIPSTAYVVLTSVNILIGI----------------------NGSISTFVMELFGNHEI 1816

  Fly  1243 -------------FKLICMDPVVNFTSVEVFKCNSIPNCCIKSNYGTFTAGIYHDLV-------- 1286
                         |...|:...:    :::.|..::.:...:.....|.:.:..|:|        
Zfish  1817 GGINDILKNVLLIFPHFCLGRGL----IDMVKNQAMADALERFGENRFRSPLEWDMVGKNLFAMA 1877

  Fly  1287 ---ILTLLDIILLACLFVSEYHSILGFADC-RLDTRTNESPD-SNQESRAFPGILSNDTAALVDK 1346
               ::..:..:|:...|..|..|:     | :|.....|..| :.:..|...|....|...|  :
Zfish  1878 VEGVVFFIITVLIQYRFFFEPKSL-----CPKLSPIGEEDEDVARERQRIMSGAGQGDILEL--R 1935

  Fly  1347 EHTSRLNEEERSKYAAVGIGIVSKYRRNRVLRDLDFTLAKSECLSITGANNSGKTTLLKVVVNET 1411
            :.|.....:::.....:.:||                 ...||..:.|.|.:|||:..|::..::
Zfish  1936 QLTKVYKRKQKPAVDRLCVGI-----------------PPGECFGLLGVNGAGKTSTFKMLTGDS 1983

  Fly  1412 KMNAGQLWIHDYSVNTHRVQCYRMVGYCPQKDSLPSEFTPRELLYIHAMLQGHRHRIGRELSEAL 1476
            .:..|:.:|...|:.....:.::.:|||||.|::....|.||.|..:|:|:|........::|..
Zfish  1984 VVTKGEAFIAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPENEVCAVAEWG 2048

  Fly  1477 LRLVGLTPCWNRSVRMCTTGQIRRLYFAYAVLGSPDLICVDGVPAGLDPTGKRIILMMTSTMQAM 1541
            :|.:||....:::....:.|.:|:|..|.:::|:|.::.:|....|:||..:|.:.....::...
Zfish  2049 IRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE 2113

  Fly  1542 GSSFLYTMLTGLDAERLSLRTPLLLEGQLWMIRPMDTETENYKSGYQLEVRFKRKVNPNVSMSRA 1606
            |.|.:.|..:..:.|.|..|..:::.|:...:..:......:..||.:.:|.   ..|:..    
Zfish  2114 GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRV---AGPDPD---- 2171

  Fly  1607 TWNLINHFPMSPNKKFSAFMEIKFPDAVLTIERDDSMVFVLPLGTTTFSEIFLTLRKDAFEMNIE 1671
                     :.|..|   |:|.:.|.:.|..:..:.:.:.||...|:.:.||..|.|:...:.||
Zfish  2172 ---------LQPVMK---FIESELPGSTLKEKHRNMLQYQLPSSLTSLAHIFSILAKNKEFLRIE 2224

  Fly  1672 DYFITRNML----VGFQIFTYDQHQDN 1694
            ||.:::..|    |.|.....|.|.|:
Zfish  2225 DYSVSQTTLDQVFVNFAKDQSDDHSDS 2251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1494NP_001259763.1 ABC2_membrane_3 <263..480 CDD:289468 46/233 (20%)
CcmA 541..848 CDD:224054 96/364 (26%)
ABC_subfamily_A 541..761 CDD:213230 63/219 (29%)
ABC2_membrane_3 911..>1189 CDD:289468 80/431 (19%)
ABC2_membrane <1080..>1188 CDD:304374 27/117 (23%)
ABC_subfamily_A 1370..1577 CDD:213230 46/206 (22%)
PRK14255 1371..1586 CDD:172743 46/214 (21%)
abca1bXP_005173137.1 rim_protein 1..2242 CDD:130324 385/1901 (20%)
ABC_subfamily_A 902..1121 CDD:213230 63/219 (29%)
ABC_subfamily_A 1932..2152 CDD:213230 50/238 (21%)
DUF4162 2146..2238 CDD:290451 22/110 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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