DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15446 and scrt1b

DIOPT Version :9

Sequence 1:NP_608430.2 Gene:CG15446 / 33088 FlyBaseID:FBgn0031155 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001014369.1 Gene:scrt1b / 541533 ZFINID:ZDB-GENE-050327-72 Length:279 Species:Danio rerio


Alignment Length:65 Identity:16/65 - (24%)
Similarity:26/65 - (40%) Gaps:5/65 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 MGRHPPFSVFSCPLDYCKENFDSRRAMYKHQRETGHHNWPH-NCSKCGQVFRTSGFMRMHSVNAC 348
            |..|.....|.|.  :|.:.|..|..:..|.:.  |..:.| .|.:|.:.|....::..|..:||
Zfish   206 MRSHTGEKPFGCA--HCGKAFADRSNLRAHMQT--HSAFKHFKCKRCNKTFVLKSYLNKHYESAC 266

  Fly   349  348
            Zfish   267  266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15446NP_608430.2 None
scrt1bNP_001014369.1 zf-C2H2 130..152 CDD:278523
C2H2 Zn finger 132..152 CDD:275368
C2H2 Zn finger 163..180 CDD:275371
COG5048 187..>263 CDD:227381 14/60 (23%)
zf-C2H2 187..209 CDD:278523 1/2 (50%)
C2H2 Zn finger 189..209 CDD:275368 1/2 (50%)
C2H2 Zn finger 217..237 CDD:275368 5/23 (22%)
zf-C2H2 217..237 CDD:278523 5/23 (22%)
zf-H2C2_2 229..253 CDD:290200 5/25 (20%)
C2H2 Zn finger 245..261 CDD:275368 3/15 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.