DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15446 and scrt

DIOPT Version :9

Sequence 1:NP_608430.2 Gene:CG15446 / 33088 FlyBaseID:FBgn0031155 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster


Alignment Length:421 Identity:86/421 - (20%)
Similarity:135/421 - (32%) Gaps:113/421 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ECQRPVEPTEVKHPNNPVNRRPVSYRQMA----NQSRRQLENDSWLSSDRLPMMVRHEIETRNKK 92
            :|..|..||......:|....|.:..::|    |...|:|....:.:  .||.| ..||..    
  Fly   109 KCWGPSSPTAGTTAPSPPPHSPEAATRVAGNVYNGYTRELSPLHYTA--YLPRM-ESEITV---- 166

  Fly    93 QLMSKYNAETATHVFSHNGGPRR----GRPPSAATAARMASEFARQVGGISQSPTIEDEGKSGEQ 153
             :.:...|..|.....:..|.:.    ..|||:.|::...|...   .|...||....:..|..:
  Fly   167 -IRAAATALVAARTSGNGSGDQHLAAYQTPPSSTTSSPSCSPSG---AGDRYSPLSSGQTSSERK 227

  Fly   154 -------SVMQPKSKKANKMPDKVADKLA-------------------------TKSEPKSEESN 186
                   ::..|..||....|..:.||.|                         |...|.::...
  Fly   228 CFSSTGATLSLPPKKKDIYRPYSLDDKPAHGYRRRVPAEEDLHAAHAILDLSASTAFHPPTQPHQ 292

  Fly   187 VPVKIKVEGVEHNAEGSQSDSM---------VNTNQGFTTNRNFIPILSSFPNPYRNMDV----- 237
            :..:.:.:..:|....||...:         :...|....:...:|.|.:..:......:     
  Fly   293 LQQQQQQQQQQHQHHHSQQQHLAPQQHHYLPLQQQQQQQAHHTHLPTLEAHAHLRSTSSIAELAA 357

  Fly   238 ---TWTEQFNA--LSNQYYNHI-----MNSISSLSQIQPLNS-TPSANPPIFGANPMVMGRHPPF 291
               ...||..|  .|:...||:     .||.||.||:|..|| |.:.||.  |...:..|.|...
  Fly   358 AASVVNEQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNPD--GDGCLQDGEHSGA 420

  Fly   292 SVFSC-PLDYCKENF--DSRRAMYKH---------------QRETGHHNWPHNCSKCGQVFRTSG 338
            |..|. .:.|..|.|  ...|:..||               |::|     .:.||:||:.:.||.
  Fly   421 SGASAKTVAYTYEAFFVSDGRSKRKHVADPAAAASGVPTPDQQKT-----KYTCSECGKQYATSS 480

  Fly   339 FMRMHSVNACARNLHKFKITKPNELQQLGKK 369
                        ||.:.|.|..:...|..||
  Fly   481 ------------NLSRHKQTHRSLDSQSAKK 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15446NP_608430.2 None
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 9/33 (27%)
C2H2 Zn finger 469..489 CDD:275370 9/31 (29%)
C2H2 Zn finger 500..520 CDD:275368 86/421 (20%)
COG5048 520..>617 CDD:227381
C2H2 Zn finger 526..546 CDD:275368
zf-H2C2_2 539..562 CDD:290200
C2H2 Zn finger 554..574 CDD:275368
zf-C2H2 554..574 CDD:278523
zf-H2C2_2 566..590 CDD:290200
C2H2 Zn finger 582..599 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.