DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15446 and snai-1

DIOPT Version :9

Sequence 1:NP_608430.2 Gene:CG15446 / 33088 FlyBaseID:FBgn0031155 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_499902.2 Gene:snai-1 / 186874 WormBaseID:WBGene00019299 Length:193 Species:Caenorhabditis elegans


Alignment Length:137 Identity:30/137 - (21%)
Similarity:50/137 - (36%) Gaps:43/137 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 IMNSISSLSQIQPLNSTPSANPPIFGANPMVMGRHPPFSVFSC-PLD-------YCKEN----FD 306
            |..:|..|....|..|:.|::.                   || .||       :||:.    |.
 Worm    10 IFETIEDLISPDPAPSSSSSSA-------------------SCSSLDNQKLVCQFCKKTYLTYFG 55

  Fly   307 SRRAMYKHQRETGHHNWPHNCSKCGQVFRTSGFMRMH--------SVNACARNLHKFKITKPNEL 363
            .||.:..|:......:.||    |.:|:|:.|.::||        ..|.|.::..:..:.|.:..
 Worm    56 LRRHLQFHKEGKLQQSCPH----CKKVYRSPGALKMHLKTHSLPCVCNDCGKSFSRPWLLKGHLR 116

  Fly   364 QQLGKKP 370
            ...|:||
 Worm   117 THTGEKP 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15446NP_608430.2 None
snai-1NP_499902.2 C2H2 Zn finger 72..92 CDD:275368 8/23 (35%)
COG5048 98..>155 CDD:227381 6/26 (23%)
C2H2 Zn finger 98..118 CDD:275368 3/19 (16%)
C2H2 Zn finger 126..146 CDD:275368
zf-H2C2_2 138..163 CDD:290200
C2H2 Zn finger 154..170 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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