DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cbs and CYS4

DIOPT Version :9

Sequence 1:NP_001285508.1 Gene:Cbs / 33081 FlyBaseID:FBgn0031148 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_011671.3 Gene:CYS4 / 853059 SGDID:S000003387 Length:507 Species:Saccharomyces cerevisiae


Alignment Length:504 Identity:212/504 - (42%)
Similarity:300/504 - (59%) Gaps:55/504 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 NILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPG-YTI 111
            |:::::|.|||:.|..:|.:.||:.::|||.|..|||||:||||...||::||..|.:.|. .|:
Yeast    13 NVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTL 77

  Fly   112 IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVA 176
            |||||||||||||:..|:|||:.||.:||||||||||.|:.|||:||||||.||:||||..|.||
Yeast    78 IEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVA 142

  Fly   177 QQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLD-----NKVDMIVVSAGTAGTISGIGRK 236
            ::|::|.|.:::||||.|..||.|||.||..||..||:     :.:..:|..|||.||||||.:.
Yeast   143 KKLEKEIPGAVILDQYNNMMNPEAHYFGTGREIQRQLEDLNLFDNLRAVVAGAGTGGTISGISKY 207

  Fly   237 IKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCF 301
            :|||....||||.||:|||||:|..|||||:..|:||||||||.|.|.|..::|||.|..|...|
Yeast   208 LKEQNDKIQIVGADPFGSILAQPENLNKTDITDYKVEGIGYDFVPQVLDRKLIDVWYKTDDKPSF 272

  Fly   302 PMSRRLNAEEGLLCGGSSGGAMHAALEHAR---KLKKGQRCVVILPDGIRNYMTKFVSDNWMEAR 363
            ..:|:|.:.||:|.|||||.|..|.:::..   :|.:....|.|.||.||:|:||||.|.|::..
Yeast   273 KYARQLISNEGVLVGGSSGSAFTAVVKYCEDHPELTEDDVIVAIFPDSIRSYLTKFVDDEWLKKN 337

  Fly   364 N--------------FKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQL 414
            |              .:....::...:.:..:.:|.| .|.|.:|..|.|.:.|.::|.:..|||
Yeast   338 NLWDDDVLARFDSSKLEASTTKYADVFGNATVKDLHL-KPVVSVKETAKVTDVIKILKDNGFDQL 401

  Fly   415 PVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKA-------LN---------------KRVI 457
            ||: .:||.:.|:|....|:.:: |:|...:|..||.       ||               |:.|
Yeast   402 PVL-TEDGKLSGLVTLSELLRKL-SINNSNNDNTIKGKYLDFKKLNNFNDVSSYNENKSGKKKFI 464

  Fly   458 RLNESEILGKLARVLEVDPSVLIL-GKNPAGKVELKALATKLDVTTFIA 505
            :.:|:..|..|.|..|.:.|.:|. |..|.      .:.||:|:.:::|
Yeast   465 KFDENSKLSDLNRFFEKNSSAVITDGLKPI------HIVTKMDLLSYLA 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CbsNP_001285508.1 cysta_beta 45..505 CDD:273464 211/502 (42%)
CBS_like 54..352 CDD:107204 163/306 (53%)
CBS_pair_PALP_assoc 386..504 CDD:239981 39/140 (28%)
CYS4NP_011671.3 cysta_beta 10..507 CDD:273464 211/502 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344387
Domainoid 1 1.000 304 1.000 Domainoid score I213
eggNOG 1 0.900 - - E1_COG0031
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37258
Inparanoid 1 1.050 358 1.000 Inparanoid score I384
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54083
OrthoFinder 1 1.000 - - FOG0000642
OrthoInspector 1 1.000 - - oto100290
orthoMCL 1 0.900 - - OOG6_100154
Panther 1 1.100 - - LDO PTHR10314
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R286
SonicParanoid 1 1.000 - - X341
TreeFam 1 0.960 - -
1514.790

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