DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cbs and AT1G55880

DIOPT Version :9

Sequence 1:NP_001285508.1 Gene:Cbs / 33081 FlyBaseID:FBgn0031148 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_175984.1 Gene:AT1G55880 / 842038 AraportID:AT1G55880 Length:421 Species:Arabidopsis thaliana


Alignment Length:358 Identity:106/358 - (29%)
Similarity:165/358 - (46%) Gaps:56/358 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 ILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIE 113
            :::.||.|||:::|::..:.|  ||:..||||||||||||||:..:::|:|.|.|.|.||..:.|
plant    44 LVDAIGNTPLIRINSLSEATG--CEILGKCEFLNPGGSVKDRVAVKIIQEALESGKLFPGGIVTE 106

  Fly   114 PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRT-PTEAAYDSPEGLIYVAQ 177
            .::|:|.|.||......|.||.:|:|:..:.||...:..|||.:.|. |....:  .:..:.:|:
plant   107 GSAGSTAISLATVAPAYGCKCHVVIPDDAAIEKSQIIEALGASVERVRPVSITH--KDHYVNIAR 169

  Fly   178 Q--------------------LQRETPNSIVL-------------------DQYRNAGNPLAHYD 203
            :                    :.:|..|...:                   ||:.|..|..|||:
plant   170 RRADEANELASKRRLGSETNGIHQEKTNGCTVEEVKEPSLFSDSVTGGFFADQFENLANYRAHYE 234

  Fly   204 GTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSIL-----------A 257
            ||..||..|....:|..|.:|||.||::|:.|.::::....:...:||.||.|           .
plant   235 GTGPEIWHQTQGNIDAFVAAAGTGGTLAGVSRFLQDKNERVKCFLIDPPGSGLYNKVTRGVMYTR 299

  Fly   258 RPAELNKTDVQFYEV-EGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGG 321
            ..||..:....|..: ||||.:.....|....:|...:..|.:...|||.|...:||..|.||..
plant   300 EEAEGRRLKNPFDTITEGIGINRLTKNFLMAKLDGGFRGTDKEAVEMSRFLLKNDGLFVGSSSAM 364

  Fly   322 AMHAALEHARKLKKGQRCVVILPDGIRNYMTKF 354
            ....|:..|:.|..|...|.||.|....:::||
plant   365 NCVGAVRVAQTLGPGHTIVTILCDSGMRHLSKF 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CbsNP_001285508.1 cysta_beta 45..505 CDD:273464 106/358 (30%)
CBS_like 54..352 CDD:107204 103/349 (30%)
CBS_pair_PALP_assoc 386..504 CDD:239981
AT1G55880NP_175984.1 PLN02356 1..420 CDD:215204 106/358 (30%)
PALP 46..388 CDD:278708 103/345 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0031
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1016546at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100154
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X341
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.720

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