DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cbs and cbs-1

DIOPT Version :9

Sequence 1:NP_001285508.1 Gene:Cbs / 33081 FlyBaseID:FBgn0031148 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_001257091.1 Gene:cbs-1 / 181215 WormBaseID:WBGene00013866 Length:704 Species:Caenorhabditis elegans


Alignment Length:379 Identity:193/379 - (50%)
Similarity:252/379 - (66%) Gaps:22/379 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PQPKPYERPADFI-DPGK--------PSKCKWHLGTAEKSPHIHRGIAHRQQITPNILEVIGCTP 57
            |||.....|...: ||.|        |....|.....|    .::....|..:...:|:.||.||
 Worm   330 PQPNSIYDPKVLVYDPTKLAGEWTQDPETKSWSHSEVE----FNKFNPERPLVLDTVLDAIGKTP 390

  Fly    58 LVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE---EQGLLKPGYTIIEPTSGNT 119
            ||||.:||.:.|::|.:|.|||::|.|||.||||..|||:.||   :.|.|.||.|:||||||||
 Worm   391 LVKLQHIPKAHGVKCNVYVKCEYMNAGGSTKDRIAKRMVEIAEKTGKPGKLVPGVTLIEPTSGNT 455

  Fly   120 GIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETP 184
            ||||::|.||:||||||.||:|||.||..|:.:||:.|||||.||.:|||...|.||.:|:.|..
 Worm   456 GIGLSLASAVRGYKCIITMPKKMSKEKSIAMASLGSTIIRTPNEAGFDSPHSHIGVALRLKSEIQ 520

  Fly   185 NSIVLDQYRNAGNPLAHYDGTAAEILWQL-DNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVG 248
            :::|||||.|.|||||||:.||.||::.: |..:|::|::|||.||::||.|||.|::|:.::||
 Worm   521 DAVVLDQYCNPGNPLAHYEETAEEIIYDMGDKHIDLVVLTAGTGGTVTGISRKIHERIPTAKVVG 585

  Fly   249 VDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGL 313
            |||:|||||.|||   ||:.|||||||||||.|...|.:.:|.|.|..|.:.|.|:|.|...||:
 Worm   586 VDPHGSILAGPAE---TDIDFYEVEGIGYDFLPGTLDTSAIDYWAKSHDKESFLMARELIRSEGI 647

  Fly   314 LCGGSSGGAMHAALEHARKLK--KGQRCVVILPDGIRNYMTKFVSDNWMEARNF 365
            |||||||.|:|.|||..:.|.  .....||:||||||||:|||:.|:||..|:|
 Worm   648 LCGGSSGCAVHYALEECKSLNLPAEANVVVLLPDGIRNYITKFLDDDWMNERHF 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CbsNP_001285508.1 cysta_beta 45..505 CDD:273464 182/327 (56%)
CBS_like 54..352 CDD:107204 172/303 (57%)
CBS_pair_PALP_assoc 386..504 CDD:239981
cbs-1NP_001257091.1 Trp-synth-beta_II 30..307 CDD:294246
cysta_beta 378..>703 CDD:273464 182/327 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160998
Domainoid 1 1.000 332 1.000 Domainoid score I605
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1016546at2759
OrthoFinder 1 1.000 - - FOG0000642
OrthoInspector 1 1.000 - - otm14127
orthoMCL 1 0.900 - - OOG6_100154
Panther 1 1.100 - - LDO PTHR10314
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R286
SonicParanoid 1 1.000 - - X341
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.880

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