DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1529 and rgr

DIOPT Version :9

Sequence 1:NP_001138223.2 Gene:CG1529 / 33077 FlyBaseID:FBgn0031144 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_001163089.2 Gene:rgr / 35843 FlyBaseID:FBgn0267792 Length:889 Species:Drosophila melanogaster


Alignment Length:308 Identity:82/308 - (26%)
Similarity:121/308 - (39%) Gaps:66/308 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 HEKQADGQQVD---------------------LSKKQEDQK-KILDDRED-EEYPDEYENSQQQL 157
            :..||.||.:|                     |.|:...|| |||.:.|| ...|..:....:.|
  Fly   618 YRSQALGQMLDEINTTFHTSYTAEQLEKTLFNLRKEFSAQKRKILTESEDSSSIPLLHAKLAEFL 682

  Fly   158 SQGTGSKRRAGLACDQCGKQVYKLPYLEAHIRSVHQGYSKPFLCRSCDKSFTRYEQLRSHMRNAH 222
            .|..|..|     ||.|...|......:.| ||.|.| ::||:|..|.|.|.....|..|:|   
  Fly   683 DQNLGPFR-----CDICSDLVKTCDQYKVH-RSAHDG-TQPFICTLCGKGFQMPCNLTVHIR--- 737

  Fly   223 PQLEQLQQELRDL--ICELCNRQYSTKNALGEHLKRHAQRKEHVCEHCGVAKVTRTELLTHLRTH 285
                   :..||.  .||.|:::::|...:..||:.|...:.::|:.||.:..|.:....|.|.|
  Fly   738 -------RHRRDFPYSCEQCDKRFATSTEVAIHLRTHTGERPYICDLCGKSFKTWSFFDIHRRRH 795

  Fly   286 -NPTWERFKCEQCPQLFRHKSAISRHVRVVHEGQRRFQCGHCEKKFGTHASQVRHERLHTESTGS 349
             |.:  .|.|..|.:.|..|:..:.|:. .|...|:..|..|.|.|.|:.:..:|..||.     
  Fly   796 LNQS--TFHCPICAKGFYEKNRFTDHMN-SHWAIRKHLCTVCGKTFTTYGNLKKHTELHL----- 852

  Fly   350 GEAAEEWPFACIHCQKPCVSRQTLELHLRRHRARKTHRKRREHSRESQ 397
              |.::  :.|..|.|......:|..|           |:||||...|
  Fly   853 --AVKK--YKCGTCGKRFAQFASLRWH-----------KKREHSSVGQ 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1529NP_001138223.2 zf-AD 11..79 CDD:285071
C2H2 Zn finger 171..192 CDD:275368 7/20 (35%)
zf-C2H2_2 201..>257 CDD:289522 15/57 (26%)
C2H2 Zn finger 201..222 CDD:275368 7/20 (35%)
C2H2 Zn finger 237..257 CDD:275368 6/19 (32%)
C2H2 Zn finger 265..285 CDD:275368 6/19 (32%)
zf-C2H2_8 268..349 CDD:292531 23/81 (28%)
C2H2 Zn finger 294..315 CDD:275368 5/20 (25%)
C2H2 Zn finger 323..343 CDD:275368 6/19 (32%)
C2H2 Zn finger 360..380 CDD:275368 5/19 (26%)
rgrNP_001163089.2 MADF_DNA_bdg 335..420 CDD:287510
MADF_DNA_bdg 465..551 CDD:287510
MADF_DNA_bdg 595..682 CDD:287510 15/63 (24%)
C2H2 Zn finger 691..711 CDD:275368 7/20 (35%)
C2H2 Zn finger 719..739 CDD:275368 7/29 (24%)
zf-H2C2_2 731..756 CDD:290200 8/34 (24%)
COG5048 742..>824 CDD:227381 22/84 (26%)
C2H2 Zn finger 747..767 CDD:275368 6/19 (32%)
zf-H2C2_2 763..784 CDD:290200 6/20 (30%)
C2H2 Zn finger 775..795 CDD:275368 6/19 (32%)
C2H2 Zn finger 803..818 CDD:275368 4/14 (29%)
C2H2 Zn finger 831..851 CDD:275368 6/19 (32%)
C2H2 Zn finger 859..877 CDD:275368 5/28 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457192
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.