DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1304 and Ovch2

DIOPT Version :10

Sequence 1:NP_608418.1 Gene:CG1304 / 33074 FlyBaseID:FBgn0031141 Length:260 Species:Drosophila melanogaster
Sequence 2:XP_003749007.2 Gene:Ovch2 / 308919 RGDID:1564636 Length:579 Species:Rattus norvegicus


Alignment Length:239 Identity:72/239 - (30%)
Similarity:112/239 - (46%) Gaps:42/239 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SLNGRVVGGEDAVKNQFPHQVSLRNAGSHSCGGSILSRNYVLTAAHCVTNQDSNGNSVPIAAERF 91
            ||..|:|||....|..:|.||||:....|.|||:|:|..:|:|||||:.|::        .|...
  Rat    47 SLFSRIVGGSQVEKGSYPWQVSLKQKQKHICGGTIISSQWVITAAHCMANRN--------IALTL 103

  Fly    92 TIRAGSNDRFS---GGVLVQVAEVIVHEEYG-----NFLNDVALLRLESPLILSASIQPIDLPTA 148
            .:.||.:|...   |...:.:..:|:|.::.     |:  |:|||::.........::|:.||..
  Rat   104 NVTAGEHDLSQAEPGEQTLAIETIIIHPQFSTKKPMNY--DIALLKMVGTFQFGQFVRPVCLPEP 166

  Fly   149 DTPADVDVI--ISGWGRIKHQGDLPRYLQYNTLKSISLERCDELI--------GWGVQSELCLIH 203
            ....:...|  .:||||:...|.||:.||...|..::.|.|:.::        |   ::.|| ..
  Rat   167 GEQFNAGYICTTAGWGRLSEGGSLPQVLQQVNLPILTHEECEAVMLTLRNPITG---KTFLC-TG 227

  Fly   204 EADNG--ACNGDSGGPAVYNNQ-----VVGVAGFVWS-ACGTSY 239
            ..|.|  ||.|||||..:..|:     :.||..  |. .||.|:
  Rat   228 SPDGGRDACQGDSGGSLMCQNRKGAWTLAGVTS--WGLGCGRSW 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1304NP_608418.1 Tryp_SPc 32..256 CDD:238113 69/234 (29%)
Ovch2XP_003749007.2 Tryp_SPc 52..297 CDD:238113 69/234 (29%)
CUB 317..420 CDD:238001
CUB 431..541 CDD:238001
Blue background indicates that the domain is not in the aligned region.

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