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Protein Alignment Ser6 and Hpn

DIOPT Version :10

Sequence 1:	NP_523426.1	Gene:	Ser6 / 33073	FlyBaseID:	FBgn0011834	Length:	259	Species:	Drosophila melanogaster
Sequence 2:	XP_038958886.1	Gene:	Hpn / 29135	RGDID:	61982	Length:	539	Species:	Rattus norvegicus

Alignment Length:	259	Identity:	87/259 - (33%)
Similarity:	126/259 - (48%)	Gaps:	40/259 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    19 LPVQSAPGKLNGRVVGGEDAVKNQFPHQVSLRNAGSHSCGGSILTRTYILTAAHCVSNEDVNHVI 83
            |||.        |:|||:|:...::|.|||||..|:|.||||:|:..::||||||....  |.|:
  Rat   199 LPVD--------RIVGGQDSSLGRWPWQVSLRYDGTHLCGGSLLSGDWVLTAAHCFPER--NRVL 253

  Fly    84 TPIAAERFTIRAGSNDRFS-GGVLVQVAEVIVHEEYGNF--------LNDVALLRLESPLILSAS 139
            :     |:.:.||:..|.| ..|.:.|..||.|..|..|        .||:||:.|.|.|.|:..
  Rat   254 S-----RWRVFAGAVARTSPHAVQLGVQAVIYHGGYLPFRDPTIDENSNDIALVHLSSSLPLTEY 313

  Fly   140 IQPIDLPTVDTPADVD---VVISGWGRIKHQGDLPRYLQYNTLKSITRQQCEELIDFG--FEGEL 199
            |||:.||... .|.||   ..::|||..:..|.....||...:..|:.:.|.....:|  .:.::
  Rat   314 IQPVCLPAAG-QALVDGKVCTVTGWGNTQFYGQQAVVLQEARVPIISNEVCNSPDFYGNQIKPKM 377

  Fly   200 CLLHQVDNG--ACNGDSGGPAVYNNQLVG-----VAGFVVDGCG---STYPDGYARVFYFKDWI 253
            ......:.|  ||.||||||.|..:::.|     :.|.|..|.|   :..|..|.:|..|::||
  Rat   378 FCAGYPEGGIDACQGDSGGPFVCEDRISGTSRWRLCGIVSWGTGCALARKPGVYTKVIDFREWI 441

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.