DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ser6 and svh-1

DIOPT Version :9

Sequence 1:NP_523426.1 Gene:Ser6 / 33073 FlyBaseID:FBgn0011834 Length:259 Species:Drosophila melanogaster
Sequence 2:NP_501379.2 Gene:svh-1 / 182375 WormBaseID:WBGene00006620 Length:951 Species:Caenorhabditis elegans


Alignment Length:245 Identity:72/245 - (29%)
Similarity:110/245 - (44%) Gaps:36/245 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 RVVGGEDAVKNQFPHQVSLRNAG--SHSCGGSILTRTYILTAAHCVSNEDVNHVITPIAAERFTI 93
            |||||.:.|...||...:|||..  :|.||.|||.:|:::|||||...::      .:::....:
 Worm   712 RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCFEEDE------RVSSYEVVV 770

  Fly    94 RAGSNDRFSGG-VLVQVAEVIVHEEYGN-FLNDVALLRLESPLI-LSASIQPIDLPTVD---TPA 152
            ....|::..|. .:..:..:..:..|.: |.:|:|:|.:..|.| .:...|||.||:.|   ||.
 Worm   771 GDWDNNQTDGNEQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPG 835

  Fly   153 DVDVVISGWGRIKHQGDLPRY---LQYNTLKSITRQQC---EELIDFGFEGELCLLHQVDNG--A 209
            . ..|:||||.:.     .||   ||...:..|.|..|   .::.........|..: ::.|  :
 Worm   836 R-QCVVSGWGSMG-----LRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGY-LEGGIDS 893

  Fly   210 CNGDSGGPAVYNNQ-----LVGVAGFVVDGCGSTYPDG-YARVFYFKDWI 253
            |.||||||.....:     |.||..: .|||......| |..|..:..||
 Worm   894 CQGDSGGPFACRREDGAFVLAGVISW-GDGCAQKKQPGIYTMVAPYLSWI 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ser6NP_523426.1 Tryp_SPc 31..253 CDD:214473 70/243 (29%)
Tryp_SPc 32..256 CDD:238113 71/244 (29%)
svh-1NP_501379.2 KR 227..306 CDD:214527
LDLa 320..355 CDD:238060
PAN_AP_HGF 373..434 CDD:238532
LDLa 558..590 CDD:197566
SRCR_2 599..681 CDD:382996
Tryp_SPc 713..945 CDD:238113 71/244 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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